Wall clock time and date at job start Wed Apr 1 2020 04:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50701 * 109.47394 * 2 1 4 4 C 1.38027 * 119.50905 * 125.27687 * 3 2 1 5 5 C 1.39932 * 119.12665 * 180.25237 * 4 3 2 6 6 C 1.48165 * 120.88752 * 179.75425 * 5 4 3 7 7 O 1.21512 * 120.00117 * 359.71869 * 6 5 4 8 8 N 1.34779 * 119.99622 * 179.71919 * 6 5 4 9 9 C 1.46500 * 119.99793 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47092 * 325.00176 * 9 8 6 11 11 C 1.52997 * 109.47204 * 85.00113 * 9 8 6 12 12 C 1.53006 * 109.47164 * 60.00075 * 11 9 8 13 13 C 1.52997 * 109.47127 * 59.99836 * 12 11 9 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 11 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 16 16 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 17 17 C 1.52997 * 109.46975 * 180.02562 * 15 14 13 18 18 N 1.46499 * 109.47391 * 294.99824 * 17 15 14 19 19 C 1.36939 * 120.00451 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99755 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00077 * 179.97438 * 19 18 17 22 22 N 1.31618 * 120.00077 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99966 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46780 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46818 * 120.00543 * 23 21 19 26 26 H 1.48492 * 109.47327 * 240.00112 * 23 21 19 27 27 C 1.39607 * 118.21696 * 359.48225 * 5 4 3 28 28 C 1.38844 * 118.95347 * 0.25082 * 27 5 4 29 29 O 1.35681 * 119.62906 * 179.97438 * 28 27 5 30 30 N 1.31872 * 119.51628 * 304.99855 * 3 2 1 31 31 H 1.09000 * 109.47483 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47155 * 300.00271 * 1 2 3 33 33 H 1.09002 * 109.47128 * 59.99988 * 1 2 3 34 34 H 1.09005 * 109.47160 * 240.00182 * 2 1 3 35 35 H 1.09002 * 109.47128 * 120.00012 * 2 1 3 36 36 H 1.07997 * 120.43741 * 0.02562 * 4 3 2 37 37 H 0.96995 * 119.99934 * 0.02562 * 8 6 5 38 38 H 1.09001 * 109.47375 * 180.02562 * 11 9 8 39 39 H 1.09000 * 109.47140 * 300.00127 * 11 9 8 40 40 H 1.08998 * 109.46505 * 299.99708 * 12 11 9 41 41 H 1.08996 * 109.46884 * 180.02562 * 12 11 9 42 42 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 43 43 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 44 44 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 46 46 H 1.09004 * 109.47610 * 54.99797 * 17 15 14 47 47 H 1.09001 * 109.47532 * 174.99616 * 17 15 14 48 48 H 0.97002 * 119.99938 * 0.02562 * 18 17 15 49 49 H 0.97000 * 120.00085 * 179.97438 * 22 21 19 50 50 H 1.08006 * 120.52439 * 180.22783 * 27 5 4 51 51 H 0.96702 * 114.00159 * 89.99815 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9130 1.8305 0.9806 5 6 3.3703 3.1530 0.9761 6 6 4.3119 3.6358 2.0133 7 8 4.6933 2.8814 2.8861 8 7 4.7452 4.9117 1.9885 9 6 5.6767 5.3890 3.0136 10 1 5.4492 4.9065 3.9642 11 6 7.1095 5.0487 2.5990 12 6 7.4289 5.7259 1.2647 13 6 7.2881 7.2419 1.4157 14 6 5.8552 7.5822 1.8304 15 6 5.5359 6.9050 3.1646 16 1 6.2289 7.2600 3.9273 17 6 4.1028 7.2448 3.5790 18 7 3.9976 8.6827 3.8392 19 6 2.8005 9.2225 4.2275 20 1 1.9338 8.5883 4.3415 21 6 2.7010 10.5848 4.4745 22 7 3.7571 11.3577 4.3352 23 14 1.0678 11.3212 5.0035 24 1 0.0444 10.2483 5.0854 25 1 1.2214 11.9610 6.3348 26 1 0.6396 12.3397 4.0114 27 6 2.9200 4.0037 -0.0351 28 6 2.0383 3.5088 -0.9867 29 8 1.5915 4.3237 -1.9753 30 7 1.6284 2.2528 -0.9401 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.2420 1.1405 1.7435 37 1 4.4404 5.5140 1.2919 38 1 7.8025 5.4033 3.3619 39 1 7.2098 3.9686 2.4914 40 1 6.7359 5.3708 0.5020 41 1 8.4495 5.4831 0.9691 42 1 7.5151 7.7244 0.4650 43 1 7.9811 7.5970 2.1784 44 1 5.7548 8.6623 1.9375 45 1 5.1621 7.2272 1.0677 46 1 3.4177 6.9697 2.7770 47 1 3.8450 6.6923 4.4825 48 1 4.7759 9.2524 3.7365 49 1 3.6875 12.3098 4.5074 50 1 3.2520 5.0306 -0.0764 51 1 2.1443 4.3191 -2.7687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498493446.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:03 Heat of formation + Delta-G solvation = -75.852801 kcal Electronic energy + Delta-G solvation = -31101.289828 eV Core-core repulsion = 26999.153823 eV Total energy + Delta-G solvation = -4102.136004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.08639 -41.11229 -39.37291 -38.27123 -36.48440 -35.31555 -34.55045 -33.73598 -33.28858 -31.26132 -30.95603 -30.29265 -27.08091 -26.21683 -24.90252 -24.70786 -23.59268 -23.18395 -22.09337 -21.56867 -20.12547 -19.96539 -19.22348 -18.35657 -17.90958 -16.94480 -16.85964 -16.70714 -16.45535 -16.30082 -15.99129 -15.74026 -15.33170 -15.18796 -15.12192 -14.96658 -14.88465 -14.64448 -14.23452 -14.00752 -13.45642 -13.38654 -13.12504 -13.02749 -12.97808 -12.90855 -12.79524 -12.75185 -12.60260 -12.37080 -12.10842 -11.95750 -11.93967 -11.87159 -11.49014 -11.38041 -11.21922 -11.06902 -11.02979 -10.87652 -10.54862 -10.09848 -9.93035 -9.00529 -7.97350 -5.25314 -0.48281 -0.15346 1.45462 1.45917 1.55778 1.68184 1.94282 2.43729 2.53595 2.62777 3.31817 3.36210 3.42562 3.59504 3.76140 3.81009 3.83140 3.86162 4.07180 4.13272 4.21877 4.22944 4.38200 4.40339 4.42953 4.46311 4.48791 4.56428 4.63299 4.67659 4.71854 4.78303 4.87900 4.91561 4.99616 5.05632 5.06919 5.15805 5.18354 5.25765 5.29170 5.29905 5.31964 5.41632 5.45906 5.46308 5.51081 5.57250 6.25417 6.35596 6.54323 6.80270 7.00411 7.32671 8.07602 8.32301 9.25975 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009003 B = 0.003006 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.160154 B = 9311.634318 C =11008.579144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C 0.149 3.851 4 C -0.130 4.130 5 C -0.075 4.075 6 C 0.560 3.440 7 O -0.561 6.561 8 N -0.697 5.697 9 C 0.161 3.839 10 H 0.073 0.927 11 C -0.122 4.122 12 C -0.109 4.109 13 C -0.114 4.114 14 C -0.106 4.106 15 C -0.089 4.089 16 H 0.082 0.918 17 C 0.160 3.840 18 N -0.739 5.739 19 C -0.245 4.245 20 H 0.069 0.931 21 C -0.070 4.070 22 N -0.965 5.965 23 Si 0.968 3.032 24 H -0.271 1.271 25 H -0.293 1.293 26 H -0.291 1.291 27 C -0.160 4.160 28 C 0.310 3.690 29 O -0.487 6.487 30 N -0.502 5.502 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.158 0.842 37 H 0.408 0.592 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.021 0.979 47 H 0.004 0.996 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.158 0.842 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.326 -21.853 -14.006 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C 0.012 3.988 4 C -0.150 4.150 5 C -0.086 4.086 6 C 0.347 3.653 7 O -0.440 6.440 8 N -0.349 5.349 9 C 0.056 3.944 10 H 0.091 0.909 11 C -0.160 4.160 12 C -0.147 4.147 13 C -0.151 4.151 14 C -0.144 4.144 15 C -0.108 4.108 16 H 0.100 0.900 17 C 0.034 3.966 18 N -0.382 5.382 19 C -0.377 4.377 20 H 0.086 0.914 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.798 3.202 24 H -0.195 1.195 25 H -0.220 1.220 26 H -0.218 1.218 27 C -0.181 4.181 28 C 0.131 3.869 29 O -0.297 6.297 30 N -0.222 5.222 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.176 0.824 37 H 0.246 0.754 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.039 0.961 47 H 0.022 0.978 48 H 0.210 0.790 49 H 0.061 0.939 50 H 0.176 0.824 51 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.424 -22.462 -13.615 26.489 hybrid contribution -0.026 1.779 0.498 1.848 sum 3.398 -20.683 -13.117 24.726 Atomic orbital electron populations 1.21666 0.94003 1.02826 1.01592 1.20670 0.97015 0.88158 1.05149 1.21438 0.91942 0.96835 0.88614 1.22278 0.97460 0.95415 0.99895 1.20260 0.97828 0.95215 0.95261 1.18270 0.80355 0.82347 0.84366 1.90752 1.59106 1.56095 1.38057 1.45982 1.46558 1.11134 1.31264 1.20905 0.89570 0.92863 0.91054 0.90869 1.21859 0.94495 1.00647 0.99043 1.21462 1.02158 0.94527 0.96519 1.21536 0.95443 0.96277 1.01891 1.21468 0.97594 0.99966 0.95346 1.21471 0.96461 0.93718 0.99126 0.89975 1.20757 0.95148 0.84421 0.96318 1.42509 1.09849 1.03760 1.82087 1.19588 0.89765 0.91694 1.36633 0.91352 1.25476 1.00531 0.96767 1.03502 1.69797 1.29890 1.04519 1.57374 0.85149 0.79760 0.78193 0.77119 1.19543 1.21980 1.21758 1.22398 0.98035 1.01953 0.95755 1.19067 0.90534 0.86515 0.90750 1.84790 1.55625 1.61005 1.28309 1.66848 1.24661 1.04108 1.26606 0.90099 0.93777 0.93018 0.88314 0.87899 0.82448 0.75386 0.90029 0.91851 0.91882 0.90465 0.90840 0.91825 0.93160 0.91884 0.96150 0.97756 0.79016 0.93924 0.82445 0.71582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.77 71.98 0.70 -1.27 16 2 C -0.07 -0.93 6.33 29.85 0.19 -0.74 16 3 C 0.15 2.86 6.18 42.50 0.26 3.13 16 4 C -0.13 -2.66 9.27 22.63 0.21 -2.45 16 5 C -0.07 -1.68 5.91 -19.90 -0.12 -1.80 16 6 C 0.56 14.54 7.76 86.88 0.67 15.22 16 7 O -0.56 -17.78 16.11 -3.75 -0.06 -17.84 16 8 N -0.70 -16.47 3.57 -445.10 -1.59 -18.06 16 9 C 0.16 4.09 2.23 44.99 0.10 4.19 16 10 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 11 C -0.12 -2.53 5.60 30.60 0.17 -2.36 16 12 C -0.11 -1.92 5.77 30.60 0.18 -1.75 16 13 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 14 C -0.11 -2.82 4.90 30.59 0.15 -2.67 16 15 C -0.09 -2.61 2.02 -10.80 -0.02 -2.64 16 16 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 17 C 0.16 6.28 5.42 86.38 0.47 6.75 16 18 N -0.74 -36.86 5.33 -343.45 -1.83 -38.69 16 19 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 20 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 21 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 22 N -0.97 -58.39 13.06 21.65 0.28 -58.11 16 23 Si 0.97 46.42 29.55 68.60 2.03 48.44 16 24 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 27 C -0.16 -3.21 9.55 22.75 0.22 -2.99 16 28 C 0.31 6.51 7.74 84.78 0.66 7.17 16 29 O -0.49 -8.79 13.56 -89.99 -1.22 -10.01 16 30 N -0.50 -11.00 9.87 -297.16 -2.93 -13.93 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 0.86 7.94 -2.39 -0.02 0.85 16 34 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.10 0.95 7.86 -2.39 -0.02 0.93 16 36 H 0.16 2.96 7.62 -2.91 -0.02 2.94 16 37 H 0.41 8.57 4.81 -92.71 -0.45 8.13 16 38 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.07 7.60 -2.39 -0.02 1.05 16 41 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.67 7.18 -2.39 -0.02 1.65 16 45 H 0.06 1.52 6.51 -2.39 -0.02 1.51 16 46 H 0.02 0.80 7.61 -2.39 -0.02 0.78 16 47 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.38 19.72 6.85 -92.71 -0.64 19.08 16 49 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 50 H 0.16 2.63 6.53 -2.91 -0.02 2.61 16 51 H 0.42 3.01 9.06 -74.06 -0.67 2.34 16 Total: -1.00 -72.74 406.92 -0.78 -73.53 By element: Atomic # 1 Polarization: 36.25 SS G_CDS: -0.78 Total: 35.47 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.33 Total: -0.80 kcal Atomic # 7 Polarization: -122.72 SS G_CDS: -6.07 Total: -128.79 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -1.28 Total: -27.85 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -72.74 -0.78 -73.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498493446.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.326 kcal (2) G-P(sol) polarization free energy of solvation -72.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds