Wall clock time and date at job start Wed Apr 1 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.46961 * 2 1 4 4 O 1.33490 * 126.83352 * 270.02521 * 3 2 1 5 5 N 1.20661 * 113.16263 * 179.97438 * 4 3 2 6 6 C 1.30012 * 112.29804 * 359.72156 * 5 4 3 7 7 C 1.37368 * 126.82736 * 89.99866 * 3 2 1 8 8 C 1.47393 * 128.56479 * 0.02562 * 7 3 2 9 9 O 1.21610 * 120.00160 * 326.72645 * 8 7 3 10 10 N 1.34774 * 120.00136 * 146.71976 * 8 7 3 11 11 C 1.46917 * 120.63583 * 175.25899 * 10 8 7 12 12 C 1.53195 * 108.77910 * 126.36932 * 11 10 8 13 13 C 1.53038 * 109.30959 * 54.63993 * 12 11 10 14 14 N 1.46507 * 109.45849 * 178.63107 * 13 12 11 15 15 C 1.36937 * 120.00187 * 60.01959 * 14 13 12 16 16 H 1.07997 * 119.99931 * 15.11079 * 15 14 13 17 17 C 1.38809 * 119.99924 * 195.11137 * 15 14 13 18 18 N 1.31616 * 120.00561 * 19.82833 * 17 15 14 19 19 Si 1.86806 * 119.99829 * 199.83499 * 17 15 14 20 20 H 1.48504 * 109.47107 * 359.97438 * 19 17 15 21 21 H 1.48490 * 109.47454 * 119.99662 * 19 17 15 22 22 H 1.48502 * 109.46624 * 239.99873 * 19 17 15 23 23 C 1.46495 * 119.99838 * 240.02578 * 14 13 12 24 24 C 1.53001 * 109.47353 * 84.72375 * 23 14 13 25 25 C 1.53005 * 117.50202 * 243.62183 * 24 23 14 26 26 C 1.53001 * 60.00079 * 252.50919 * 25 24 23 27 27 C 1.53042 * 109.52362 * 298.63561 * 13 12 11 28 28 C 1.46937 * 120.63042 * 355.23606 * 10 8 7 29 29 H 1.08996 * 109.47482 * 299.99791 * 1 2 3 30 30 H 1.08998 * 109.47298 * 60.00324 * 1 2 3 31 31 H 1.09003 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47077 * 240.00195 * 2 1 3 33 33 H 1.08998 * 109.47298 * 119.99676 * 2 1 3 34 34 H 1.07998 * 127.33915 * 180.30157 * 6 5 4 35 35 H 1.09003 * 109.58738 * 6.58057 * 11 10 8 36 36 H 1.09002 * 109.58857 * 246.15852 * 11 10 8 37 37 H 1.08994 * 109.49957 * 294.68519 * 12 11 10 38 38 H 1.09003 * 109.49765 * 174.58550 * 12 11 10 39 39 H 1.08995 * 109.46235 * 58.65753 * 13 12 11 40 40 H 0.96994 * 120.00381 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.47408 * 204.72460 * 23 14 13 42 42 H 1.09004 * 109.47428 * 324.72919 * 23 14 13 43 43 H 1.09004 * 115.55076 * 29.33019 * 24 23 14 44 44 H 1.09006 * 117.49562 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.49764 * 145.01568 * 25 24 23 46 46 H 1.08996 * 117.49835 * 252.50791 * 26 25 24 47 47 H 1.09008 * 117.49756 * 107.48561 * 26 25 24 48 48 H 1.09006 * 109.49496 * 181.30775 * 27 13 12 49 49 H 1.08992 * 109.50482 * 301.40994 * 27 13 12 50 50 H 1.09000 * 109.58063 * 353.41679 * 28 10 8 51 51 H 1.08999 * 109.58707 * 113.84104 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2986 2.1755 -1.0684 5 7 2.6890 3.2810 -0.7833 6 6 2.7486 3.4668 0.5021 7 6 2.3067 2.1971 1.0996 8 6 2.1832 1.8465 2.5258 9 8 1.3037 1.0908 2.8923 10 7 3.0452 2.3632 3.4239 11 6 2.8731 2.1067 4.8602 12 6 4.1809 1.5382 5.4198 13 6 5.3310 2.4907 5.0849 14 7 6.5783 1.9664 5.6469 15 6 7.0419 0.7382 5.2572 16 1 6.6391 0.2643 4.3743 17 6 8.0296 0.1025 5.9969 18 7 8.2476 0.4569 7.2455 19 14 9.0495 -1.2562 5.2200 20 1 8.6103 -1.4641 3.8167 21 1 10.4834 -0.8709 5.2384 22 1 8.8649 -2.5140 5.9875 23 6 7.3294 2.7559 6.6259 24 6 6.7603 2.5095 8.0246 25 6 6.1305 3.6998 8.7509 26 6 7.4859 3.1556 9.2066 27 6 5.4681 2.6127 3.5656 28 6 4.1753 3.1935 2.9850 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.0585 4.3618 1.0210 35 1 2.0684 1.3867 5.0090 36 1 2.6314 3.0386 5.3715 37 1 4.3743 0.5630 4.9731 38 1 4.0986 1.4335 6.5017 39 1 5.1252 3.4725 5.5111 40 1 8.9380 0.0129 7.7622 41 1 8.3784 2.4603 6.6033 42 1 7.2449 3.8146 6.3807 43 1 6.3131 1.5283 8.1840 44 1 6.1212 4.6584 8.2321 45 1 5.2686 3.5018 9.3882 46 1 7.5157 2.5996 10.1436 47 1 8.3688 3.7562 8.9877 48 1 6.3021 3.2729 3.3274 49 1 5.6494 1.6274 3.1363 50 1 4.2297 3.1904 1.8964 51 1 4.0398 4.2140 3.3433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499531091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:59 Heat of formation + Delta-G solvation = 81.410492 kcal Electronic energy + Delta-G solvation = -31944.758358 eV Core-core repulsion = 27849.441802 eV Total energy + Delta-G solvation = -4095.316556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.06924 -39.97951 -37.74599 -36.47335 -34.88562 -34.63349 -33.85437 -32.11218 -30.94641 -30.31908 -29.75725 -26.29622 -25.66202 -24.39967 -24.09688 -23.04409 -22.19747 -21.49645 -21.46416 -19.97588 -19.39451 -18.88529 -17.97753 -17.63928 -16.77676 -16.32344 -15.99674 -15.33344 -15.06985 -14.73755 -14.46060 -14.38905 -13.81811 -13.80035 -13.66966 -13.58421 -13.48214 -13.05553 -12.98082 -12.81449 -12.21613 -12.03618 -11.92467 -11.70132 -11.61325 -11.30498 -11.15362 -10.95400 -10.88873 -10.78487 -10.67524 -10.65832 -10.46287 -10.29458 -10.10965 -9.95017 -9.86435 -9.69534 -9.55541 -9.18026 -8.80107 -8.49013 -8.34176 -6.85736 -5.75938 -3.13749 1.00756 1.64844 2.62623 2.86005 3.20086 3.36094 3.45786 3.45868 4.04761 4.14926 4.45188 4.48988 4.68475 4.91587 4.93634 4.97576 5.02641 5.12794 5.14046 5.32834 5.40609 5.45718 5.48035 5.58881 5.62693 5.63600 5.74801 5.78258 5.80120 5.90631 5.97850 5.99345 6.02708 6.07542 6.19702 6.31845 6.34969 6.41771 6.56310 6.56818 6.68003 6.71162 6.89734 6.98369 7.04182 7.28388 7.44608 7.51178 7.74235 7.82307 7.99281 8.15658 8.35103 9.21479 9.85066 10.30785 11.27871 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012684 B = 0.003105 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.999911 B = 9015.999028 C = 9918.836570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.042 3.958 4 O 0.091 5.909 5 N -0.356 5.356 6 C 0.021 3.979 7 C -0.252 4.252 8 C 0.596 3.404 9 O -0.537 6.537 10 N -0.593 5.593 11 C 0.114 3.886 12 C -0.137 4.137 13 C 0.182 3.818 14 N -0.589 5.589 15 C -0.248 4.248 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.293 1.293 23 C 0.206 3.794 24 C -0.078 4.078 25 C -0.225 4.225 26 C -0.183 4.183 27 C -0.142 4.142 28 C 0.099 3.901 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.202 0.798 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.251 0.749 41 H 0.084 0.916 42 H 0.007 0.993 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.068 0.932 50 H 0.081 0.919 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 5.375 -9.678 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.022 4.022 4 O 0.031 5.969 5 N -0.061 5.061 6 C -0.161 4.161 7 C -0.259 4.259 8 C 0.383 3.617 9 O -0.416 6.416 10 N -0.325 5.325 11 C -0.008 4.008 12 C -0.177 4.177 13 C 0.073 3.927 14 N -0.308 5.308 15 C -0.377 4.377 16 H 0.088 0.912 17 C -0.196 4.196 18 N -0.538 5.538 19 Si 0.723 3.277 20 H -0.207 1.207 21 H -0.218 1.218 22 H -0.221 1.221 23 C 0.080 3.920 24 C -0.098 4.098 25 C -0.263 4.263 26 C -0.221 4.221 27 C -0.182 4.182 28 C -0.024 4.024 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.219 0.781 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.025 0.975 43 H 0.127 0.873 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.099 0.901 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.251 5.653 -10.441 16.357 hybrid contribution 0.764 -0.847 0.718 1.348 sum -10.487 4.806 -9.724 15.087 Atomic orbital electron populations 1.21737 0.92693 1.03008 1.02968 1.20273 0.97407 0.85463 1.05106 1.24828 0.95982 0.96235 0.85107 1.84551 1.61407 1.17611 1.33327 1.73658 1.16438 0.98540 1.17493 1.26464 1.00774 0.99482 0.89358 1.22103 1.12812 0.95477 0.95542 1.16828 0.81632 0.80124 0.83092 1.90778 1.35017 1.35981 1.79815 1.47943 1.26898 1.50449 1.07247 1.21787 0.99921 1.00958 0.78172 1.22381 0.93212 1.01008 1.01099 1.20193 0.86522 0.95004 0.90967 1.44159 1.20984 1.17897 1.47758 1.19114 1.17322 0.95079 1.06179 0.91210 1.24768 1.01324 0.98338 0.95191 1.70176 1.33874 1.43690 1.06066 0.86370 0.80712 0.81805 0.78769 1.20657 1.21777 1.22053 1.20312 0.97262 0.89378 0.85047 1.22996 0.98633 0.94507 0.93697 1.23110 0.96173 1.00087 1.06899 1.22594 0.94170 1.04934 1.00425 1.22395 0.94715 1.01836 0.99233 1.22137 0.86413 0.93987 0.99869 0.91058 0.92469 0.91103 0.89142 0.87740 0.78100 0.89469 0.91755 0.91281 0.90889 0.92851 0.93894 0.89802 0.97461 0.87347 0.90662 0.90926 0.90707 0.90549 0.91056 0.91284 0.90096 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.04 -0.42 6.04 -27.88 -0.17 -0.58 16 3 C 0.04 0.49 6.80 -34.63 -0.24 0.25 16 4 O 0.09 1.08 11.06 18.66 0.21 1.29 16 5 N -0.36 -4.40 12.01 31.81 0.38 -4.02 16 6 C 0.02 0.24 10.03 -14.72 -0.15 0.09 16 7 C -0.25 -3.20 5.66 -102.89 -0.58 -3.78 16 8 C 0.60 8.71 7.56 -12.54 -0.09 8.61 16 9 O -0.54 -9.04 15.58 5.27 0.08 -8.95 16 10 N -0.59 -8.26 2.97 -174.06 -0.52 -8.78 16 11 C 0.11 1.64 6.44 -3.71 -0.02 1.62 16 12 C -0.14 -2.36 5.31 -26.61 -0.14 -2.50 16 13 C 0.18 3.22 2.60 -67.89 -0.18 3.04 16 14 N -0.59 -12.87 2.47 -165.62 -0.41 -13.27 16 15 C -0.25 -6.10 8.44 -15.06 -0.13 -6.23 16 16 H 0.07 1.75 6.89 -52.49 -0.36 1.39 16 17 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 18 N -0.89 -23.43 8.93 55.49 0.50 -22.93 16 19 Si 0.89 20.88 29.60 -169.99 -5.03 15.85 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 C 0.21 4.49 5.10 -4.04 -0.02 4.47 16 24 C -0.08 -1.63 4.43 -90.61 -0.40 -2.03 16 25 C -0.23 -3.98 10.18 -26.73 -0.27 -4.25 16 26 C -0.18 -3.46 10.25 -26.73 -0.27 -3.74 16 27 C -0.14 -2.22 5.30 -26.63 -0.14 -2.36 16 28 C 0.10 1.23 5.55 -3.72 -0.02 1.21 16 29 H 0.07 0.76 7.92 -51.93 -0.41 0.35 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.10 7.80 -51.93 -0.41 0.70 16 34 H 0.20 1.69 7.11 -52.49 -0.37 1.31 16 35 H 0.09 1.32 6.99 -51.93 -0.36 0.96 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.36 7.65 -51.93 -0.40 0.97 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 40 H 0.25 6.57 8.31 -40.82 -0.34 6.23 16 41 H 0.08 2.09 6.24 -51.93 -0.32 1.76 16 42 H 0.01 0.15 7.77 -51.93 -0.40 -0.26 16 43 H 0.11 2.66 7.54 -51.93 -0.39 2.27 16 44 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 47 H 0.08 1.39 8.14 -51.92 -0.42 0.97 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.07 1.24 7.09 -51.93 -0.37 0.88 16 50 H 0.08 0.91 4.33 -51.93 -0.23 0.69 16 51 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 401.42 15.07 6.05 6.05 Total: -1.00 -27.79 401.42 -9.50 -37.29 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -8.21 Total: 4.60 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.55 Total: -7.11 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.05 Total: -49.01 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.29 Total: -7.66 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -27.79 -9.50 -37.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499531091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.700 kcal (2) G-P(sol) polarization free energy of solvation -27.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds