Wall clock time and date at job start Wed Apr 1 2020 04:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46963 * 2 1 4 4 C 1.38364 * 120.27018 * 270.01853 * 3 2 1 5 5 N 1.31879 * 121.18442 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.80045 * 359.66033 * 5 4 3 7 7 O 1.35423 * 119.80165 * 180.33116 * 6 5 4 8 8 C 1.40285 * 120.40108 * 0.63016 * 6 5 4 9 9 C 1.47516 * 120.59941 * 179.68259 * 8 6 5 10 10 O 1.21592 * 120.00012 * 359.72194 * 9 8 6 11 11 N 1.34777 * 120.00037 * 179.71968 * 9 8 6 12 12 C 1.46506 * 120.00033 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47060 * 35.00669 * 12 11 9 14 14 C 1.52997 * 109.47289 * 275.00400 * 12 11 9 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47518 * 59.99828 * 15 14 12 17 17 C 1.53005 * 109.46632 * 300.00318 * 16 15 14 18 18 C 1.52996 * 109.47571 * 60.00168 * 17 16 15 19 19 H 1.09001 * 109.47364 * 59.99212 * 18 17 16 20 20 C 1.53002 * 109.47217 * 180.02562 * 18 17 16 21 21 N 1.46497 * 109.46752 * 294.99299 * 20 18 17 22 22 C 1.36941 * 119.99926 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99526 * 0.02562 * 22 21 20 24 24 C 1.38810 * 119.99983 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99653 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00073 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47034 * 90.00041 * 26 24 22 28 28 H 1.48502 * 109.46846 * 209.99657 * 26 24 22 29 29 H 1.48498 * 109.47092 * 329.99793 * 26 24 22 30 30 C 1.38335 * 120.27017 * 90.00299 * 3 2 1 31 31 H 1.09005 * 109.47036 * 60.00035 * 1 2 3 32 32 H 1.08994 * 109.47157 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47396 * 300.00030 * 1 2 3 34 34 H 1.09006 * 109.47139 * 239.99954 * 2 1 3 35 35 H 1.08996 * 109.47027 * 119.99688 * 2 1 3 36 36 H 1.07994 * 119.40541 * 359.97438 * 4 3 2 37 37 H 0.96704 * 114.00481 * 270.29036 * 7 6 5 38 38 H 0.97000 * 120.00155 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46832 * 299.99854 * 14 12 11 40 40 H 1.08996 * 109.46952 * 59.99873 * 14 12 11 41 41 H 1.09004 * 109.47552 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.46997 * 299.99574 * 15 14 12 43 43 H 1.09001 * 109.47194 * 59.99866 * 16 15 14 44 44 H 1.08992 * 109.47399 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.46832 * 179.97438 * 17 16 15 46 46 H 1.09001 * 109.47420 * 299.99415 * 17 16 15 47 47 H 1.08992 * 109.46954 * 54.99704 * 20 18 17 48 48 H 1.09003 * 109.46608 * 174.99798 * 20 18 17 49 49 H 0.96995 * 120.00135 * 0.02562 * 21 20 18 50 50 H 0.97000 * 119.99943 * 180.02562 * 25 24 22 51 51 H 1.07995 * 120.82686 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2644 2.0786 -1.1950 5 7 2.7034 3.3219 -1.2160 6 6 2.9352 3.9980 -0.1035 7 8 3.3793 5.2755 -0.1723 8 6 2.7297 3.3979 1.1478 9 6 2.9935 4.1457 2.3917 10 8 3.3976 5.2913 2.3382 11 7 2.7866 3.5592 3.5874 12 6 3.0491 4.3018 4.8227 13 1 2.7947 5.3515 4.6767 14 6 4.5308 4.1817 5.1849 15 6 4.8048 4.9566 6.4753 16 6 3.9544 4.3781 7.6081 17 6 2.4727 4.4982 7.2458 18 6 2.1987 3.7232 5.9554 19 1 2.4532 2.6734 6.1010 20 6 0.7171 3.8438 5.5929 21 7 -0.0923 3.1841 6.6204 22 6 -1.4570 3.1642 6.5088 23 1 -1.9365 3.6345 5.6631 24 6 -2.2239 2.5396 7.4827 25 7 -3.5356 2.5200 7.3751 26 14 -1.3945 1.7267 8.9458 27 1 -1.2510 2.7147 10.0453 28 1 -2.2211 0.5843 9.4117 29 1 -0.0522 1.2351 8.5437 30 6 2.2648 2.0783 1.1947 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0828 1.5644 -2.1272 37 1 4.3427 5.3564 -0.1944 38 1 2.4646 2.6452 3.6300 39 1 4.7852 3.1319 5.3309 40 1 5.1366 4.5935 4.3777 41 1 5.8603 4.8708 6.7336 42 1 4.5503 6.0065 6.3297 43 1 4.2089 3.3283 7.7537 44 1 4.1493 4.9304 8.5272 45 1 1.8669 4.0856 8.0526 46 1 2.2181 5.5480 7.1002 47 1 0.4421 4.8968 5.5342 48 1 0.5391 3.3674 4.6287 49 1 0.3384 2.7621 7.3801 50 1 -4.0716 2.0839 8.0558 51 1 2.0904 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569167640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:25 Heat of formation + Delta-G solvation = -50.625533 kcal Electronic energy + Delta-G solvation = -31310.666409 eV Core-core repulsion = 27209.624341 eV Total energy + Delta-G solvation = -4101.042068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16014 -39.83194 -38.19081 -37.45435 -34.84756 -34.53279 -34.28298 -32.60997 -31.96440 -30.08565 -29.56481 -29.13258 -25.64160 -24.96723 -24.28843 -23.09792 -22.54225 -21.57616 -20.78952 -20.48560 -19.82594 -19.04290 -17.87734 -17.48760 -17.25570 -16.26069 -15.94455 -15.26675 -15.03625 -14.85632 -14.52441 -14.41922 -14.23606 -14.21338 -13.95925 -13.62265 -13.54615 -13.38087 -13.27022 -12.96914 -12.77581 -12.62069 -12.33515 -12.09421 -12.01734 -11.75299 -11.66860 -11.31184 -11.26786 -11.10043 -11.01668 -10.85152 -10.55347 -10.40791 -10.20639 -10.16578 -10.12176 -10.05927 -9.61195 -9.54516 -9.11798 -8.97310 -8.88453 -7.26095 -5.79590 -3.15289 0.32752 0.78799 2.71268 2.99380 3.30628 3.32375 3.35390 3.41472 3.56684 4.21603 4.32978 4.43480 4.50922 4.55331 4.62374 4.75077 4.82288 4.92933 4.97981 5.04745 5.08143 5.16605 5.22108 5.36487 5.43191 5.45081 5.48931 5.50120 5.52235 5.56131 5.58112 5.66422 5.72501 5.79097 5.91611 5.98225 5.99527 6.03956 6.09836 6.12887 6.14920 6.22116 6.40496 6.42547 6.47331 6.62218 6.76145 7.29157 7.43255 7.58096 7.96953 8.14487 8.39303 9.18370 9.90425 10.10335 11.38940 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008353 B = 0.003568 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.403898 B = 7845.776237 C =10234.736788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 C -0.151 4.151 4 C 0.148 3.852 5 N -0.506 5.506 6 C 0.362 3.638 7 O -0.459 6.459 8 C -0.198 4.198 9 C 0.564 3.436 10 O -0.520 6.520 11 N -0.716 5.716 12 C 0.156 3.844 13 H 0.092 0.908 14 C -0.126 4.126 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.109 4.109 18 C -0.105 4.105 19 H 0.074 0.926 20 C 0.163 3.837 21 N -0.754 5.754 22 C -0.244 4.244 23 H 0.089 0.911 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 C -0.026 4.026 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.164 0.836 37 H 0.403 0.597 38 H 0.399 0.601 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.028 0.972 48 H 0.025 0.975 49 H 0.360 0.640 50 H 0.259 0.741 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.228 -3.969 -12.605 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 C -0.153 4.153 4 C -0.009 4.009 5 N -0.224 5.224 6 C 0.183 3.817 7 O -0.266 6.266 8 C -0.204 4.204 9 C 0.350 3.650 10 O -0.397 6.397 11 N -0.367 5.367 12 C 0.051 3.949 13 H 0.110 0.890 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.160 4.160 17 C -0.147 4.147 18 C -0.124 4.124 19 H 0.092 0.908 20 C 0.035 3.965 21 N -0.400 5.400 22 C -0.374 4.374 23 H 0.107 0.893 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.714 3.286 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.204 1.204 30 C -0.052 4.052 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.181 0.819 37 H 0.262 0.738 38 H 0.234 0.766 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.046 0.954 48 H 0.043 0.957 49 H 0.193 0.807 50 H 0.069 0.931 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 18.868 -2.455 -13.484 23.321 hybrid contribution 0.469 -1.569 1.880 2.493 sum 19.337 -4.025 -11.605 22.909 Atomic orbital electron populations 1.21805 0.93980 1.02391 1.02787 1.20483 0.96681 0.90910 1.03525 1.20891 1.02044 0.98791 0.93582 1.22646 0.91700 0.88699 0.97892 1.67336 1.14935 1.08711 1.31403 1.19175 0.91961 0.84305 0.86305 1.84747 1.27745 1.18760 1.95320 1.21170 1.08756 0.95601 0.94904 1.17770 0.78166 0.86186 0.82901 1.90807 1.45141 1.16748 1.87019 1.45989 1.67670 1.17656 1.05395 1.21009 0.94227 0.97339 0.82277 0.89015 1.21894 0.95994 1.00701 0.97835 1.21481 0.99426 0.99952 0.94418 1.21606 0.95423 1.01022 0.97917 1.21514 0.95451 1.00829 0.96881 1.21659 0.96254 1.00154 0.94337 0.90763 1.20641 0.87269 0.96407 0.92138 1.42708 1.03992 1.67690 1.25598 1.19054 0.80641 1.30257 1.07411 0.89333 1.24663 0.95150 1.00792 0.98458 1.69703 1.03378 1.49069 1.36036 0.86570 0.78628 0.79453 0.83989 1.21033 1.21736 1.20399 1.21683 0.92152 0.92238 0.99126 0.92442 0.91845 0.91937 0.90429 0.90410 0.81927 0.73797 0.76560 0.91957 0.91641 0.92055 0.91689 0.92099 0.91955 0.90925 0.91477 0.95417 0.95669 0.80653 0.93056 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.16 0.37 -0.76 16 2 C -0.08 -0.50 6.08 -27.88 -0.17 -0.67 16 3 C -0.15 -1.29 5.14 -104.54 -0.54 -1.83 16 4 C 0.15 1.36 10.84 -17.49 -0.19 1.17 16 5 N -0.51 -6.07 10.37 -12.98 -0.13 -6.20 16 6 C 0.36 4.65 7.77 -16.61 -0.13 4.53 16 7 O -0.46 -5.95 11.66 -39.73 -0.46 -6.41 16 8 C -0.20 -2.40 5.90 -104.69 -0.62 -3.01 16 9 C 0.56 7.70 7.74 -12.48 -0.10 7.60 16 10 O -0.52 -8.54 14.85 -16.49 -0.24 -8.79 16 11 N -0.72 -8.67 4.26 -54.85 -0.23 -8.90 16 12 C 0.16 1.99 1.90 -67.93 -0.13 1.86 16 13 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 14 C -0.13 -1.37 5.49 -26.73 -0.15 -1.52 16 15 C -0.11 -1.17 5.92 -26.73 -0.16 -1.33 16 16 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 17 C -0.11 -1.48 5.08 -26.73 -0.14 -1.62 16 18 C -0.10 -1.48 1.80 -90.62 -0.16 -1.64 16 19 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 20 C 0.16 3.03 5.56 -4.04 -0.02 3.01 16 21 N -0.75 -17.26 5.13 -59.91 -0.31 -17.56 16 22 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 23 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 25 N -0.93 -29.13 13.97 55.49 0.78 -28.36 16 26 Si 0.88 21.63 27.74 -169.99 -4.71 16.91 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.30 6.52 56.52 0.37 -5.94 16 30 C -0.03 -0.25 9.31 -38.89 -0.36 -0.61 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 35 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 36 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.40 3.42 9.06 45.56 0.41 3.83 16 38 H 0.40 4.17 6.50 -40.82 -0.27 3.91 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.03 0.48 7.30 -51.93 -0.38 0.10 16 49 H 0.36 7.98 4.71 -40.82 -0.19 7.79 16 50 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 51 H 0.14 1.13 6.51 -52.49 -0.34 0.79 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -35.13 406.20 -9.56 -44.70 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -7.46 Total: 11.72 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -2.90 Total: -3.22 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: 0.10 Total: -61.03 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.71 Total: -15.20 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.13 -9.56 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569167640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.928 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds