Wall clock time and date at job start Wed Apr 1 2020 04:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46963 * 2 1 4 4 C 1.38364 * 120.27018 * 270.01853 * 3 2 1 5 5 N 1.31879 * 121.18442 * 179.97438 * 4 3 2 6 6 C 1.32235 * 121.80045 * 359.66033 * 5 4 3 7 7 O 1.35423 * 119.80165 * 180.33116 * 6 5 4 8 8 C 1.40285 * 120.40108 * 0.63016 * 6 5 4 9 9 C 1.47516 * 120.59941 * 179.68259 * 8 6 5 10 10 O 1.21592 * 120.00012 * 359.72194 * 9 8 6 11 11 N 1.34777 * 120.00037 * 179.71968 * 9 8 6 12 12 C 1.46506 * 120.00033 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.47060 * 35.00669 * 12 11 9 14 14 C 1.52997 * 109.47289 * 275.00400 * 12 11 9 15 15 C 1.52996 * 109.47131 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.47518 * 59.99828 * 15 14 12 17 17 C 1.53005 * 109.46632 * 300.00318 * 16 15 14 18 18 C 1.52996 * 109.47571 * 60.00168 * 17 16 15 19 19 H 1.09001 * 109.47364 * 59.99212 * 18 17 16 20 20 C 1.53002 * 109.47217 * 180.02562 * 18 17 16 21 21 N 1.46497 * 109.46752 * 294.99299 * 20 18 17 22 22 C 1.36941 * 119.99926 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99526 * 0.02562 * 22 21 20 24 24 C 1.38810 * 119.99983 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99653 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00073 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47034 * 90.00041 * 26 24 22 28 28 H 1.48502 * 109.46846 * 209.99657 * 26 24 22 29 29 H 1.48498 * 109.47092 * 329.99793 * 26 24 22 30 30 C 1.38335 * 120.27017 * 90.00299 * 3 2 1 31 31 H 1.09005 * 109.47036 * 60.00035 * 1 2 3 32 32 H 1.08994 * 109.47157 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47396 * 300.00030 * 1 2 3 34 34 H 1.09006 * 109.47139 * 239.99954 * 2 1 3 35 35 H 1.08996 * 109.47027 * 119.99688 * 2 1 3 36 36 H 1.07994 * 119.40541 * 359.97438 * 4 3 2 37 37 H 0.96704 * 114.00481 * 270.29036 * 7 6 5 38 38 H 0.97000 * 120.00155 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46832 * 299.99854 * 14 12 11 40 40 H 1.08996 * 109.46952 * 59.99873 * 14 12 11 41 41 H 1.09004 * 109.47552 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.46997 * 299.99574 * 15 14 12 43 43 H 1.09001 * 109.47194 * 59.99866 * 16 15 14 44 44 H 1.08992 * 109.47399 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.46832 * 179.97438 * 17 16 15 46 46 H 1.09001 * 109.47420 * 299.99415 * 17 16 15 47 47 H 1.08992 * 109.46954 * 54.99704 * 20 18 17 48 48 H 1.09003 * 109.46608 * 174.99798 * 20 18 17 49 49 H 0.96995 * 120.00135 * 0.02562 * 21 20 18 50 50 H 0.97000 * 119.99943 * 180.02562 * 25 24 22 51 51 H 1.07995 * 120.82686 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2644 2.0786 -1.1950 5 7 2.7034 3.3219 -1.2160 6 6 2.9352 3.9980 -0.1035 7 8 3.3793 5.2755 -0.1723 8 6 2.7297 3.3979 1.1478 9 6 2.9935 4.1457 2.3917 10 8 3.3976 5.2913 2.3382 11 7 2.7866 3.5592 3.5874 12 6 3.0491 4.3018 4.8227 13 1 2.7947 5.3515 4.6767 14 6 4.5308 4.1817 5.1849 15 6 4.8048 4.9566 6.4753 16 6 3.9544 4.3781 7.6081 17 6 2.4727 4.4982 7.2458 18 6 2.1987 3.7232 5.9554 19 1 2.4532 2.6734 6.1010 20 6 0.7171 3.8438 5.5929 21 7 -0.0923 3.1841 6.6204 22 6 -1.4570 3.1642 6.5088 23 1 -1.9365 3.6345 5.6631 24 6 -2.2239 2.5396 7.4827 25 7 -3.5356 2.5200 7.3751 26 14 -1.3945 1.7267 8.9458 27 1 -1.2510 2.7147 10.0453 28 1 -2.2211 0.5843 9.4117 29 1 -0.0522 1.2351 8.5437 30 6 2.2648 2.0783 1.1947 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0828 1.5644 -2.1272 37 1 4.3427 5.3564 -0.1944 38 1 2.4646 2.6452 3.6300 39 1 4.7852 3.1319 5.3309 40 1 5.1366 4.5935 4.3777 41 1 5.8603 4.8708 6.7336 42 1 4.5503 6.0065 6.3297 43 1 4.2089 3.3283 7.7537 44 1 4.1493 4.9304 8.5272 45 1 1.8669 4.0856 8.0526 46 1 2.2181 5.5480 7.1002 47 1 0.4421 4.8968 5.5342 48 1 0.5391 3.3674 4.6287 49 1 0.3384 2.7621 7.3801 50 1 -4.0716 2.0839 8.0558 51 1 2.0904 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569167640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:24 Heat of formation + Delta-G solvation = -76.016260 kcal Electronic energy + Delta-G solvation = -31311.767434 eV Core-core repulsion = 27209.624341 eV Total energy + Delta-G solvation = -4102.143092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.05208 -40.84452 -39.26313 -38.35062 -36.58500 -35.37513 -35.17736 -33.86912 -33.42504 -31.62689 -30.46604 -29.97923 -27.17299 -25.87366 -25.01689 -24.46173 -23.76273 -22.47746 -22.12606 -21.49470 -20.81011 -19.98226 -19.71282 -18.38849 -18.32933 -17.15440 -16.96183 -16.63548 -16.23856 -15.97651 -15.84520 -15.49848 -15.44866 -15.08358 -14.80087 -14.75374 -14.65418 -14.38996 -14.30613 -14.25252 -13.98759 -13.70133 -13.68160 -13.06615 -13.02807 -12.81977 -12.79370 -12.68166 -12.37805 -12.19905 -12.13918 -11.94932 -11.85444 -11.84705 -11.53813 -11.38140 -11.20312 -11.10777 -11.00928 -10.96602 -10.45256 -10.09085 -9.80056 -9.30925 -8.03252 -5.37639 -0.51248 -0.00010 1.37198 1.42279 1.49530 1.75600 2.00826 2.48069 2.48276 2.71179 3.28084 3.37159 3.44189 3.62690 3.68068 3.73345 3.80089 3.86376 3.97038 4.11841 4.23462 4.27100 4.28433 4.41319 4.43805 4.47299 4.50747 4.52689 4.55107 4.67033 4.80330 4.82875 4.86090 4.90427 5.02190 5.07674 5.13592 5.14724 5.22226 5.27711 5.29123 5.32219 5.35982 5.39155 5.45588 5.48304 5.58324 5.73940 6.19990 6.40683 6.53279 6.77795 7.07165 7.12239 7.81406 8.03493 9.18554 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008353 B = 0.003568 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3351.403898 B = 7845.776237 C =10234.736788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.073 4.073 3 C -0.143 4.143 4 C 0.150 3.850 5 N -0.526 5.526 6 C 0.344 3.656 7 O -0.479 6.479 8 C -0.214 4.214 9 C 0.562 3.438 10 O -0.556 6.556 11 N -0.709 5.709 12 C 0.161 3.839 13 H 0.066 0.934 14 C -0.116 4.116 15 C -0.112 4.112 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.090 4.090 19 H 0.092 0.908 20 C 0.162 3.838 21 N -0.751 5.751 22 C -0.238 4.238 23 H 0.048 0.952 24 C -0.062 4.062 25 N -0.985 5.985 26 Si 0.957 3.043 27 H -0.279 1.279 28 H -0.295 1.295 29 H -0.244 1.244 30 C -0.026 4.026 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.039 0.961 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.196 0.804 37 H 0.415 0.585 38 H 0.408 0.592 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.006 0.994 48 H 0.025 0.975 49 H 0.369 0.631 50 H 0.258 0.742 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.848 -6.537 -12.005 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.145 4.145 4 C -0.008 4.008 5 N -0.245 5.245 6 C 0.165 3.835 7 O -0.288 6.288 8 C -0.221 4.221 9 C 0.350 3.650 10 O -0.435 6.435 11 N -0.360 5.360 12 C 0.057 3.943 13 H 0.084 0.916 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.149 4.149 18 C -0.109 4.109 19 H 0.110 0.890 20 C 0.035 3.965 21 N -0.397 5.397 22 C -0.369 4.369 23 H 0.066 0.934 24 C -0.253 4.253 25 N -0.635 5.635 26 Si 0.783 3.217 27 H -0.205 1.205 28 H -0.222 1.222 29 H -0.168 1.168 30 C -0.052 4.052 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.213 0.787 37 H 0.277 0.723 38 H 0.246 0.754 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.024 0.976 48 H 0.043 0.957 49 H 0.203 0.797 50 H 0.067 0.933 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 21.544 -5.031 -12.895 25.608 hybrid contribution -0.442 -0.732 1.547 1.768 sum 21.103 -5.763 -11.348 24.644 Atomic orbital electron populations 1.21815 0.94852 1.02781 1.01680 1.20545 0.95651 0.89466 1.05397 1.21171 1.00735 0.99783 0.92834 1.23272 0.90106 0.87828 0.99570 1.67373 1.15940 1.10010 1.31181 1.19353 0.92824 0.84401 0.86951 1.84691 1.29159 1.19551 1.95430 1.21074 1.10524 0.96631 0.93861 1.18036 0.77509 0.85858 0.83641 1.90780 1.46916 1.18277 1.87533 1.45920 1.67234 1.17950 1.04904 1.20900 0.95593 0.95878 0.81972 0.91604 1.21820 0.93756 1.01892 0.98032 1.21481 1.00595 0.99270 0.93662 1.21555 0.92945 1.02129 0.98512 1.21523 0.97635 0.99890 0.95860 1.21524 0.92767 1.01434 0.95160 0.88996 1.20743 0.89965 0.94539 0.91206 1.42611 1.02346 1.67928 1.26798 1.18979 0.82961 1.29008 1.05920 0.93422 1.25538 0.95702 1.02061 1.02032 1.69902 1.05459 1.50718 1.37466 0.85392 0.78889 0.77995 0.79420 1.20528 1.22204 1.16767 1.21937 0.91399 0.91305 1.00566 0.92480 0.90739 0.94154 0.87851 0.89330 0.78683 0.72326 0.75443 0.90188 0.92311 0.89873 0.92527 0.90773 0.90804 0.92331 0.92596 0.97577 0.95705 0.79713 0.93292 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.89 71.98 0.71 -1.27 16 2 C -0.07 -0.70 6.08 29.85 0.18 -0.52 16 3 C -0.14 -2.14 5.14 -19.81 -0.10 -2.25 16 4 C 0.15 2.45 10.84 84.72 0.92 3.37 16 5 N -0.53 -12.38 10.37 -308.00 -3.19 -15.57 16 6 C 0.34 9.00 7.77 85.13 0.66 9.66 16 7 O -0.48 -13.04 11.66 -66.36 -0.77 -13.82 16 8 C -0.21 -5.20 5.90 -19.91 -0.12 -5.32 16 9 C 0.56 15.60 7.74 86.69 0.67 16.27 16 10 O -0.56 -18.95 14.85 16.81 0.25 -18.70 16 11 N -0.71 -16.74 4.26 -445.70 -1.90 -18.64 16 12 C 0.16 3.99 1.90 44.99 0.09 4.08 16 13 H 0.07 2.00 7.58 -2.39 -0.02 1.99 16 14 C -0.12 -2.29 5.49 30.59 0.17 -2.12 16 15 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 16 C -0.11 -2.13 5.92 30.60 0.18 -1.95 16 17 C -0.11 -2.84 5.08 30.59 0.16 -2.69 16 18 C -0.09 -2.40 1.80 -10.79 -0.02 -2.41 16 19 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 20 C 0.16 6.05 5.56 86.38 0.48 6.53 16 21 N -0.75 -33.96 5.13 -343.46 -1.76 -35.72 16 22 C -0.24 -13.55 10.47 84.03 0.88 -12.67 16 23 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 24 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 25 N -0.99 -63.03 13.97 21.65 0.30 -62.73 16 26 Si 0.96 44.03 27.74 68.60 1.90 45.93 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 28 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 29 H -0.24 -9.74 6.52 99.48 0.65 -9.09 16 30 C -0.03 -0.48 9.31 22.72 0.21 -0.26 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 0.53 8.09 -2.38 -0.02 0.51 16 35 H 0.09 0.72 8.09 -2.39 -0.02 0.70 16 36 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 37 H 0.42 7.67 9.06 -74.05 -0.67 7.00 16 38 H 0.41 7.95 6.50 -92.71 -0.60 7.35 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.06 1.67 7.18 -2.38 -0.02 1.66 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.02 0.94 7.30 -2.39 -0.02 0.92 16 49 H 0.37 15.50 4.71 -92.71 -0.44 15.06 16 50 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 51 H 0.16 2.23 6.51 -2.91 -0.02 2.21 16 Total: -1.00 -79.15 406.20 -0.27 -79.42 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.81 Total: 36.34 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 5.72 Total: 3.50 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -6.55 Total: -132.66 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.52 Total: -32.52 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.90 Total: 45.93 kcal Total: -79.15 -0.27 -79.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569167640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.399 kcal (2) G-P(sol) polarization free energy of solvation -79.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds