Wall clock time and date at job start Wed Apr 1 2020 04:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47054 * 2 1 4 4 C 1.38359 * 120.26852 * 269.97429 * 3 2 1 5 5 N 1.31877 * 121.18240 * 180.02562 * 4 3 2 6 6 C 1.32238 * 121.80294 * 359.65832 * 5 4 3 7 7 O 1.35426 * 119.79929 * 180.31571 * 6 5 4 8 8 C 1.40281 * 120.39787 * 0.62491 * 6 5 4 9 9 C 1.47514 * 120.59443 * 179.68189 * 8 6 5 10 10 O 1.21589 * 120.00732 * 359.72865 * 9 8 6 11 11 N 1.34784 * 120.00095 * 179.72512 * 9 8 6 12 12 C 1.46498 * 120.00276 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46761 * 35.00601 * 12 11 9 14 14 C 1.52996 * 109.47119 * 275.00139 * 12 11 9 15 15 C 1.53001 * 109.47238 * 299.99906 * 14 12 11 16 16 C 1.53007 * 109.46923 * 300.00062 * 15 14 12 17 17 C 1.53003 * 109.46963 * 60.00343 * 16 15 14 18 18 C 1.53001 * 109.47020 * 299.99597 * 17 16 15 19 19 H 1.09008 * 109.46939 * 300.00621 * 18 17 16 20 20 C 1.52996 * 109.47238 * 180.02562 * 18 17 16 21 21 N 1.46498 * 109.47059 * 64.99625 * 20 18 17 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 C 1.38333 * 120.27012 * 89.99814 * 3 2 1 31 31 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47520 * 300.00064 * 1 2 3 33 33 H 1.08998 * 109.47014 * 60.00194 * 1 2 3 34 34 H 1.08998 * 109.46995 * 239.99387 * 2 1 3 35 35 H 1.09008 * 109.47083 * 119.99727 * 2 1 3 36 36 H 1.07999 * 119.40526 * 0.02562 * 4 3 2 37 37 H 0.96698 * 113.99739 * 270.30772 * 7 6 5 38 38 H 0.97002 * 119.99865 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46987 * 60.00124 * 14 12 11 40 40 H 1.09003 * 109.46613 * 179.97438 * 14 12 11 41 41 H 1.08994 * 109.47016 * 59.99904 * 15 14 12 42 42 H 1.09001 * 109.46786 * 180.02562 * 15 14 12 43 43 H 1.08997 * 109.46534 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.47145 * 299.99763 * 16 15 14 45 45 H 1.09001 * 109.46736 * 179.97438 * 17 16 15 46 46 H 1.08995 * 109.47226 * 59.99434 * 17 16 15 47 47 H 1.09004 * 109.47066 * 304.99893 * 20 18 17 48 48 H 1.08994 * 109.46974 * 185.00040 * 20 18 17 49 49 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 51 51 H 1.07996 * 120.83000 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2653 2.0782 -1.1950 5 7 2.7053 3.3212 -1.2160 6 6 2.9372 3.9973 -0.1034 7 8 3.3827 5.2743 -0.1724 8 6 2.7307 3.3975 1.1478 9 6 2.9948 4.1453 2.3916 10 8 3.3997 5.2906 2.3382 11 7 2.7870 3.5592 3.5874 12 6 3.0487 4.3020 4.8226 13 1 2.7943 5.3518 4.6761 14 6 4.5300 4.1820 5.1859 15 6 4.8870 2.7085 5.3916 16 6 4.0357 2.1309 6.5242 17 6 2.5543 2.2508 6.1608 18 6 2.1973 3.7243 5.9551 19 1 2.3920 4.2771 6.8743 20 6 0.7158 3.8444 5.5924 21 7 -0.1016 3.4020 6.7248 22 6 -1.4677 3.4259 6.6338 23 1 -1.9425 3.7667 5.7255 24 6 -2.2423 3.0121 7.7088 25 7 -1.6636 2.5973 8.8158 26 14 -4.1059 3.0441 7.5843 27 1 -4.5426 2.1666 6.4688 28 1 -4.6954 2.5574 8.8575 29 1 -4.5611 4.4341 7.3281 30 6 2.2647 2.0783 1.1947 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0835 1.5640 -2.1272 37 1 4.3461 5.3541 -0.1943 38 1 2.4642 2.6454 3.6301 39 1 5.1364 4.5936 4.3790 40 1 4.7247 4.7351 6.1047 41 1 4.6923 2.1558 4.4726 42 1 5.9422 2.6231 5.6508 43 1 4.2897 1.0811 6.6703 44 1 4.2304 2.6836 7.4432 45 1 1.9479 1.8389 6.9675 46 1 2.3597 1.6982 5.2418 47 1 0.5025 3.2203 4.7246 48 1 0.4819 4.8831 5.3593 49 1 0.3248 3.0962 7.5407 50 1 -2.2049 2.3078 9.5669 51 1 2.0903 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569167642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:32 Heat of formation + Delta-G solvation = -51.889467 kcal Electronic energy + Delta-G solvation = -31584.964383 eV Core-core repulsion = 27483.867507 eV Total energy + Delta-G solvation = -4101.096876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.18170 -39.94194 -38.09625 -37.40703 -34.67644 -34.54005 -33.83887 -32.50604 -31.91314 -29.88024 -29.50830 -29.18606 -25.43720 -24.90424 -24.30406 -23.07560 -22.71466 -21.95198 -20.96186 -20.46312 -19.16712 -18.89049 -17.79191 -17.39237 -16.98824 -16.24418 -15.61907 -15.38038 -15.12207 -14.85614 -14.58340 -14.55218 -14.24893 -13.94231 -13.76228 -13.59899 -13.52662 -13.30740 -13.24690 -13.07998 -12.74555 -12.35795 -12.12745 -12.04505 -11.99188 -11.72773 -11.65782 -11.44244 -11.34041 -10.91613 -10.90727 -10.74801 -10.40063 -10.25097 -10.20009 -10.17275 -10.01657 -9.89037 -9.65056 -9.55094 -9.10099 -8.92499 -8.83781 -6.93731 -5.78610 -3.06930 0.33237 0.78096 2.73864 3.06812 3.31694 3.42636 3.47430 3.48249 3.58165 4.21471 4.33430 4.43605 4.50135 4.55690 4.76308 4.85160 4.85678 4.90034 4.96677 5.01721 5.15308 5.22382 5.29816 5.34567 5.44411 5.53444 5.54675 5.56808 5.60381 5.63071 5.64929 5.71566 5.79134 5.89685 5.93605 6.01559 6.09552 6.12506 6.13473 6.20318 6.23883 6.34048 6.43690 6.54231 6.64361 6.78546 6.84284 7.29954 7.48717 7.58625 7.68337 8.19970 8.40626 9.51934 10.09235 10.44249 11.44160 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.003406 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.315331 B = 8219.811959 C = 9836.245666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 C -0.151 4.151 4 C 0.148 3.852 5 N -0.506 5.506 6 C 0.362 3.638 7 O -0.459 6.459 8 C -0.196 4.196 9 C 0.562 3.438 10 O -0.522 6.522 11 N -0.709 5.709 12 C 0.156 3.844 13 H 0.090 0.910 14 C -0.128 4.128 15 C -0.115 4.115 16 C -0.121 4.121 17 C -0.110 4.110 18 C -0.102 4.102 19 H 0.087 0.913 20 C 0.160 3.840 21 N -0.730 5.730 22 C -0.239 4.239 23 H 0.068 0.932 24 C -0.012 4.012 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 C -0.027 4.027 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.403 0.597 38 H 0.398 0.602 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.016 0.984 48 H 0.018 0.982 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.969 -6.030 -16.338 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.153 4.153 4 C -0.010 4.010 5 N -0.224 5.224 6 C 0.182 3.818 7 O -0.266 6.266 8 C -0.203 4.203 9 C 0.347 3.653 10 O -0.399 6.399 11 N -0.362 5.362 12 C 0.051 3.949 13 H 0.108 0.892 14 C -0.166 4.166 15 C -0.153 4.153 16 C -0.159 4.159 17 C -0.147 4.147 18 C -0.122 4.122 19 H 0.105 0.895 20 C 0.032 3.968 21 N -0.375 5.375 22 C -0.371 4.371 23 H 0.086 0.914 24 C -0.208 4.208 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.053 4.053 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.180 0.820 37 H 0.262 0.738 38 H 0.235 0.765 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.070 0.930 47 H 0.034 0.966 48 H 0.036 0.964 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.680 -4.538 -17.161 23.034 hybrid contribution -0.874 -0.980 1.043 1.677 sum 13.806 -5.518 -16.118 21.928 Atomic orbital electron populations 1.21801 0.94086 1.02340 1.02695 1.20481 0.96602 0.90964 1.03568 1.20880 1.02134 0.98746 0.93588 1.22635 0.91803 0.88727 0.97861 1.67333 1.14908 1.08705 1.31438 1.19178 0.91978 0.84317 0.86301 1.84745 1.27743 1.18766 1.95313 1.21198 1.08496 0.95573 0.95006 1.17775 0.78333 0.86200 0.82952 1.90802 1.45261 1.16797 1.87037 1.46020 1.67298 1.17638 1.05259 1.20993 0.94308 0.96831 0.82740 0.89209 1.21902 0.95956 0.96959 1.01819 1.21492 0.99114 0.95914 0.98782 1.21592 0.95401 1.00505 0.98362 1.21529 0.95426 0.95807 1.01976 1.21642 0.95953 0.96809 0.97748 0.89483 1.20634 0.87741 0.96907 0.91478 1.42353 1.02892 1.78371 1.13858 1.19173 0.82653 1.36369 0.98860 0.91401 1.24709 0.97859 1.02074 0.96177 1.69644 1.34242 1.50098 1.04273 0.86289 0.85690 0.77725 0.76619 1.21316 1.21664 1.21274 1.21671 0.92293 0.92283 0.99052 0.91859 0.92051 0.92448 0.90403 0.90384 0.81959 0.73774 0.76539 0.91732 0.90890 0.92455 0.92441 0.92252 0.91798 0.90170 0.92957 0.96601 0.96399 0.78202 0.93483 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.16 0.37 -0.68 16 2 C -0.08 -0.48 6.08 -27.88 -0.17 -0.65 16 3 C -0.15 -1.27 5.14 -104.54 -0.54 -1.81 16 4 C 0.15 1.33 10.84 -17.49 -0.19 1.14 16 5 N -0.51 -6.03 10.37 -12.98 -0.13 -6.17 16 6 C 0.36 4.65 7.77 -16.61 -0.13 4.52 16 7 O -0.46 -5.97 11.66 -39.74 -0.46 -6.44 16 8 C -0.20 -2.39 5.90 -104.69 -0.62 -3.01 16 9 C 0.56 7.80 7.74 -12.48 -0.10 7.70 16 10 O -0.52 -8.71 14.85 -16.48 -0.24 -8.95 16 11 N -0.71 -8.85 3.57 -54.85 -0.20 -9.04 16 12 C 0.16 2.08 2.23 -67.93 -0.15 1.93 16 13 H 0.09 1.37 7.58 -51.93 -0.39 0.98 16 14 C -0.13 -1.47 5.60 -26.73 -0.15 -1.62 16 15 C -0.12 -1.18 5.77 -26.73 -0.15 -1.34 16 16 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 17 C -0.11 -1.50 4.90 -26.73 -0.13 -1.63 16 18 C -0.10 -1.53 2.02 -90.62 -0.18 -1.72 16 19 H 0.09 1.37 8.14 -51.92 -0.42 0.94 16 20 C 0.16 3.12 5.42 -4.04 -0.02 3.10 16 21 N -0.73 -17.89 5.33 -59.91 -0.32 -18.21 16 22 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.75 13.06 55.49 0.72 -27.02 16 26 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 C -0.03 -0.26 9.31 -38.89 -0.36 -0.62 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.08 0.44 8.09 -51.92 -0.42 0.01 16 36 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.40 3.47 9.06 45.56 0.41 3.88 16 38 H 0.40 4.43 4.77 -40.82 -0.19 4.23 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.57 7.60 -51.93 -0.39 0.18 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.32 7.18 -51.93 -0.37 0.95 16 46 H 0.05 0.66 6.50 -51.93 -0.34 0.32 16 47 H 0.02 0.31 7.61 -51.93 -0.40 -0.08 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.38 9.78 6.85 -40.82 -0.28 9.50 16 50 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 51 H 0.14 1.14 6.51 -52.49 -0.34 0.80 16 LS Contribution 405.22 15.07 6.11 6.11 Total: -1.00 -33.96 405.22 -9.82 -43.78 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -7.33 Total: 12.07 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.93 Total: -3.42 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.07 Total: -60.44 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.71 Total: -15.39 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.96 -9.82 -43.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569167642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.114 kcal (2) G-P(sol) polarization free energy of solvation -33.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds