Wall clock time and date at job start Wed Apr 1 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47054 * 2 1 4 4 C 1.38359 * 120.26852 * 269.97429 * 3 2 1 5 5 N 1.31877 * 121.18240 * 180.02562 * 4 3 2 6 6 C 1.32238 * 121.80294 * 359.65832 * 5 4 3 7 7 O 1.35426 * 119.79929 * 180.31571 * 6 5 4 8 8 C 1.40281 * 120.39787 * 0.62491 * 6 5 4 9 9 C 1.47514 * 120.59443 * 179.68189 * 8 6 5 10 10 O 1.21589 * 120.00732 * 359.72865 * 9 8 6 11 11 N 1.34784 * 120.00095 * 179.72512 * 9 8 6 12 12 C 1.46498 * 120.00276 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.46761 * 35.00601 * 12 11 9 14 14 C 1.52996 * 109.47119 * 275.00139 * 12 11 9 15 15 C 1.53001 * 109.47238 * 299.99906 * 14 12 11 16 16 C 1.53007 * 109.46923 * 300.00062 * 15 14 12 17 17 C 1.53003 * 109.46963 * 60.00343 * 16 15 14 18 18 C 1.53001 * 109.47020 * 299.99597 * 17 16 15 19 19 H 1.09008 * 109.46939 * 300.00621 * 18 17 16 20 20 C 1.52996 * 109.47238 * 180.02562 * 18 17 16 21 21 N 1.46498 * 109.47059 * 64.99625 * 20 18 17 22 22 C 1.36943 * 119.99752 * 179.72430 * 21 20 18 23 23 H 1.08002 * 119.99793 * 0.27665 * 22 21 20 24 24 C 1.38811 * 120.00012 * 180.27737 * 22 21 20 25 25 N 1.31624 * 119.99698 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00072 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47213 * 60.00246 * 26 24 22 28 28 H 1.48502 * 109.47317 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47081 * 299.99875 * 26 24 22 30 30 C 1.38333 * 120.27012 * 89.99814 * 3 2 1 31 31 H 1.08999 * 109.46985 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47520 * 300.00064 * 1 2 3 33 33 H 1.08998 * 109.47014 * 60.00194 * 1 2 3 34 34 H 1.08998 * 109.46995 * 239.99387 * 2 1 3 35 35 H 1.09008 * 109.47083 * 119.99727 * 2 1 3 36 36 H 1.07999 * 119.40526 * 0.02562 * 4 3 2 37 37 H 0.96698 * 113.99739 * 270.30772 * 7 6 5 38 38 H 0.97002 * 119.99865 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.46987 * 60.00124 * 14 12 11 40 40 H 1.09003 * 109.46613 * 179.97438 * 14 12 11 41 41 H 1.08994 * 109.47016 * 59.99904 * 15 14 12 42 42 H 1.09001 * 109.46786 * 180.02562 * 15 14 12 43 43 H 1.08997 * 109.46534 * 179.97438 * 16 15 14 44 44 H 1.08994 * 109.47145 * 299.99763 * 16 15 14 45 45 H 1.09001 * 109.46736 * 179.97438 * 17 16 15 46 46 H 1.08995 * 109.47226 * 59.99434 * 17 16 15 47 47 H 1.09004 * 109.47066 * 304.99893 * 20 18 17 48 48 H 1.08994 * 109.46974 * 185.00040 * 20 18 17 49 49 H 0.97001 * 120.00384 * 0.02562 * 21 20 18 50 50 H 0.96999 * 119.99739 * 180.02562 * 25 24 22 51 51 H 1.07996 * 120.83000 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2653 2.0782 -1.1950 5 7 2.7053 3.3212 -1.2160 6 6 2.9372 3.9973 -0.1034 7 8 3.3827 5.2743 -0.1724 8 6 2.7307 3.3975 1.1478 9 6 2.9948 4.1453 2.3916 10 8 3.3997 5.2906 2.3382 11 7 2.7870 3.5592 3.5874 12 6 3.0487 4.3020 4.8226 13 1 2.7943 5.3518 4.6761 14 6 4.5300 4.1820 5.1859 15 6 4.8870 2.7085 5.3916 16 6 4.0357 2.1309 6.5242 17 6 2.5543 2.2508 6.1608 18 6 2.1973 3.7243 5.9551 19 1 2.3920 4.2771 6.8743 20 6 0.7158 3.8444 5.5924 21 7 -0.1016 3.4020 6.7248 22 6 -1.4677 3.4259 6.6338 23 1 -1.9425 3.7667 5.7255 24 6 -2.2423 3.0121 7.7088 25 7 -1.6636 2.5973 8.8158 26 14 -4.1059 3.0441 7.5843 27 1 -4.5426 2.1666 6.4688 28 1 -4.6954 2.5574 8.8575 29 1 -4.5611 4.4341 7.3281 30 6 2.2647 2.0783 1.1947 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0835 1.5640 -2.1272 37 1 4.3461 5.3541 -0.1943 38 1 2.4642 2.6454 3.6301 39 1 5.1364 4.5936 4.3790 40 1 4.7247 4.7351 6.1047 41 1 4.6923 2.1558 4.4726 42 1 5.9422 2.6231 5.6508 43 1 4.2897 1.0811 6.6703 44 1 4.2304 2.6836 7.4432 45 1 1.9479 1.8389 6.9675 46 1 2.3597 1.6982 5.2418 47 1 0.5025 3.2203 4.7246 48 1 0.4819 4.8831 5.3593 49 1 0.3248 3.0962 7.5407 50 1 -2.2049 2.3078 9.5669 51 1 2.0903 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569167642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:31 Heat of formation + Delta-G solvation = -75.184550 kcal Electronic energy + Delta-G solvation = -31585.974534 eV Core-core repulsion = 27483.867507 eV Total energy + Delta-G solvation = -4102.107027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.09035 -40.97083 -39.18338 -38.31435 -36.46235 -35.22841 -34.86846 -33.74502 -33.31440 -31.24917 -30.67992 -30.01701 -27.01642 -25.86857 -25.01030 -24.69381 -23.73489 -22.88735 -22.08378 -21.60008 -20.13802 -19.88338 -19.29484 -18.52541 -18.16326 -17.12787 -16.81958 -16.58747 -16.32587 -16.02063 -15.82283 -15.55594 -15.27223 -15.09788 -14.91521 -14.78901 -14.61492 -14.43295 -14.32624 -13.99601 -13.98652 -13.42765 -13.12883 -13.03125 -12.96824 -12.87578 -12.80155 -12.70945 -12.60816 -12.34880 -12.16159 -11.94166 -11.85693 -11.84153 -11.42278 -11.23140 -11.16282 -11.04130 -11.00160 -10.85854 -10.45698 -10.07150 -9.78874 -8.99824 -7.95971 -5.24193 -0.50097 0.00443 1.46124 1.48492 1.54701 1.78005 2.04767 2.48914 2.54708 2.72746 3.37205 3.43297 3.54396 3.66480 3.68894 3.77907 3.81297 3.85371 4.08286 4.12818 4.23089 4.28260 4.41272 4.45882 4.47499 4.50909 4.53272 4.57920 4.66252 4.68156 4.72923 4.81531 4.90204 4.91195 5.00810 5.08235 5.15714 5.17297 5.27027 5.29781 5.32865 5.34014 5.36667 5.44702 5.46578 5.48782 5.52225 5.59716 6.26307 6.42821 6.54441 6.78688 7.14609 7.33621 8.08333 8.33702 9.26920 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008456 B = 0.003406 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3310.315331 B = 8219.811959 C = 9836.245666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.074 4.074 3 C -0.142 4.142 4 C 0.150 3.850 5 N -0.526 5.526 6 C 0.344 3.656 7 O -0.479 6.479 8 C -0.213 4.213 9 C 0.561 3.439 10 O -0.557 6.557 11 N -0.701 5.701 12 C 0.163 3.837 13 H 0.066 0.934 14 C -0.121 4.121 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.104 4.104 18 C -0.089 4.089 19 H 0.079 0.921 20 C 0.162 3.838 21 N -0.738 5.738 22 C -0.248 4.248 23 H 0.068 0.932 24 C -0.068 4.068 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.277 1.277 28 H -0.292 1.292 29 H -0.283 1.283 30 C -0.027 4.027 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.197 0.803 37 H 0.415 0.585 38 H 0.406 0.594 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.065 0.935 47 H 0.022 0.978 48 H 0.000 1.000 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.470 -8.154 -17.686 24.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 C -0.144 4.144 4 C -0.008 4.008 5 N -0.244 5.244 6 C 0.165 3.835 7 O -0.288 6.288 8 C -0.219 4.219 9 C 0.348 3.652 10 O -0.437 6.437 11 N -0.354 5.354 12 C 0.058 3.942 13 H 0.085 0.915 14 C -0.160 4.160 15 C -0.145 4.145 16 C -0.151 4.151 17 C -0.142 4.142 18 C -0.108 4.108 19 H 0.097 0.903 20 C 0.035 3.965 21 N -0.382 5.382 22 C -0.380 4.380 23 H 0.086 0.914 24 C -0.260 4.260 25 N -0.615 5.615 26 Si 0.797 3.203 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.210 1.210 30 C -0.053 4.053 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.213 0.787 37 H 0.277 0.723 38 H 0.244 0.756 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.018 0.982 49 H 0.210 0.790 50 H 0.061 0.939 51 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 15.197 -6.672 -18.534 24.880 hybrid contribution -1.049 -0.331 1.377 1.762 sum 14.149 -7.003 -17.158 23.316 Atomic orbital electron populations 1.21812 0.94705 1.02804 1.01747 1.20553 0.95815 0.89422 1.05371 1.21161 1.00716 0.99757 0.92765 1.23273 0.90122 0.87823 0.99557 1.67375 1.15896 1.10022 1.31152 1.19343 0.92830 0.84399 0.86922 1.84689 1.29129 1.19599 1.95423 1.21065 1.10417 0.96614 0.93834 1.18056 0.77593 0.85866 0.83637 1.90777 1.46997 1.18347 1.87536 1.45914 1.66981 1.17792 1.04705 1.20823 0.95485 0.95481 0.82420 0.91546 1.21845 0.93899 0.98340 1.01900 1.21453 0.99937 0.94508 0.98641 1.21539 0.93340 1.01632 0.98636 1.21456 0.96984 0.94219 1.01539 1.21470 0.93098 0.98235 0.98001 0.90278 1.20730 0.90084 0.95483 0.90207 1.42494 1.02453 1.78342 1.14863 1.19517 0.84257 1.35467 0.98767 0.91430 1.25464 1.02079 1.02472 0.96019 1.69788 1.35539 1.51362 1.04830 0.85297 0.80634 0.77754 0.76588 1.20257 1.21842 1.20952 1.21904 0.91588 0.91311 1.00476 0.90728 0.93997 0.92434 0.87889 0.89394 0.78655 0.72337 0.75604 0.92058 0.90324 0.91765 0.90551 0.90667 0.91981 0.93087 0.91675 0.95963 0.98213 0.79008 0.93905 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 71.98 0.71 -1.02 16 2 C -0.07 -0.65 6.08 29.85 0.18 -0.46 16 3 C -0.14 -2.02 5.14 -19.81 -0.10 -2.12 16 4 C 0.15 2.35 10.84 84.71 0.92 3.27 16 5 N -0.53 -12.05 10.37 -308.00 -3.19 -15.25 16 6 C 0.34 8.86 7.77 85.13 0.66 9.53 16 7 O -0.48 -12.93 11.66 -66.40 -0.77 -13.71 16 8 C -0.21 -5.11 5.90 -19.91 -0.12 -5.23 16 9 C 0.56 15.69 7.74 86.69 0.67 16.36 16 10 O -0.56 -19.17 14.85 16.82 0.25 -18.92 16 11 N -0.70 -17.17 3.57 -445.72 -1.59 -18.77 16 12 C 0.16 4.35 2.23 44.99 0.10 4.45 16 13 H 0.07 2.11 7.58 -2.39 -0.02 2.09 16 14 C -0.12 -2.64 5.60 30.59 0.17 -2.47 16 15 C -0.11 -1.94 5.77 30.60 0.18 -1.76 16 16 C -0.11 -2.32 5.92 30.60 0.18 -2.14 16 17 C -0.10 -2.76 4.90 30.60 0.15 -2.61 16 18 C -0.09 -2.68 2.02 -10.79 -0.02 -2.70 16 19 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 20 C 0.16 6.42 5.42 86.38 0.47 6.89 16 21 N -0.74 -36.84 5.33 -343.46 -1.83 -38.67 16 22 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 23 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 25 N -0.96 -58.00 13.06 21.65 0.28 -57.72 16 26 Si 0.97 45.94 29.55 68.60 2.03 47.96 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 29 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 30 C -0.03 -0.48 9.31 22.72 0.21 -0.27 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.10 0.45 8.09 -2.39 -0.02 0.43 16 35 H 0.09 0.65 8.09 -2.38 -0.02 0.63 16 36 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.42 7.65 9.06 -74.06 -0.67 6.98 16 38 H 0.41 8.52 4.77 -92.71 -0.44 8.08 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.06 1.09 7.60 -2.39 -0.02 1.08 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.05 1.68 7.18 -2.39 -0.02 1.66 16 46 H 0.06 1.53 6.50 -2.39 -0.02 1.52 16 47 H 0.02 0.87 7.61 -2.38 -0.02 0.85 16 48 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 49 H 0.38 19.70 6.85 -92.71 -0.64 19.07 16 50 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 51 H 0.16 2.19 6.51 -2.91 -0.02 2.17 16 Total: -1.00 -74.39 405.22 0.05 -74.33 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -0.78 Total: 37.44 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: 5.67 Total: 3.29 kcal Atomic # 7 Polarization: -124.07 SS G_CDS: -6.33 Total: -130.40 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.52 Total: -32.63 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.39 0.05 -74.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569167642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.852 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds