Wall clock time and date at job start Wed Apr 1 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47451 * 2 1 4 4 N 1.46504 * 109.45996 * 303.92366 * 3 2 1 5 5 C 1.36934 * 119.99868 * 297.81222 * 4 3 2 6 6 H 1.07994 * 119.99858 * 356.64099 * 5 4 3 7 7 C 1.38816 * 119.99816 * 176.64280 * 5 4 3 8 8 N 1.31618 * 119.99762 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99714 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47199 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47069 * 120.00036 * 9 7 5 12 12 H 1.48505 * 109.46692 * 239.99591 * 9 7 5 13 13 C 1.53043 * 109.46410 * 63.89672 * 3 2 1 14 14 C 1.53191 * 109.31688 * 181.38770 * 13 3 2 15 15 N 1.46919 * 108.77108 * 305.36492 * 14 13 3 16 16 C 1.34784 * 120.63015 * 233.58544 * 15 14 13 17 17 O 1.21279 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00126 * 180.02562 * 16 15 14 19 19 O 1.42900 * 109.46993 * 179.97438 * 18 16 15 20 20 C 1.42899 * 113.99859 * 179.97438 * 19 18 16 21 21 C 1.50706 * 109.47397 * 179.97438 * 20 19 18 22 22 C 1.38646 * 120.79118 * 269.72882 * 21 20 19 23 23 C 1.38206 * 119.16126 * 180.29372 * 22 21 20 24 24 N 1.31874 * 120.76479 * 359.97271 * 23 22 21 25 25 C 1.31869 * 121.72379 * 0.02562 * 24 23 22 26 26 C 1.38203 * 120.76880 * 0.02562 * 25 24 23 27 27 C 1.46930 * 118.74416 * 53.86113 * 15 14 13 28 28 C 1.53038 * 109.46231 * 183.96713 * 3 2 1 29 29 H 1.08995 * 109.47449 * 174.36401 * 1 2 3 30 30 H 1.09000 * 109.46896 * 294.37105 * 1 2 3 31 31 H 1.09003 * 109.46496 * 54.36325 * 1 2 3 32 32 H 1.08998 * 109.47012 * 239.99560 * 2 1 3 33 33 H 1.09005 * 109.46850 * 119.99852 * 2 1 3 34 34 H 0.96999 * 119.99402 * 117.81045 * 4 3 2 35 35 H 0.97003 * 119.99584 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.49826 * 61.42988 * 13 3 2 37 37 H 1.09010 * 109.49479 * 301.34191 * 13 3 2 38 38 H 1.08998 * 109.58680 * 185.57853 * 14 13 3 39 39 H 1.08997 * 109.58455 * 65.15086 * 14 13 3 40 40 H 1.09002 * 109.47372 * 59.99696 * 18 16 15 41 41 H 1.08997 * 109.47210 * 299.99485 * 18 16 15 42 42 H 1.09006 * 109.47075 * 60.00179 * 20 19 18 43 43 H 1.08997 * 109.47806 * 300.00171 * 20 19 18 44 44 H 1.07996 * 120.41983 * 0.24295 * 22 21 20 45 45 H 1.08001 * 119.61889 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.61933 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.42325 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.58423 * 65.92419 * 27 15 14 49 49 H 1.08994 * 109.58595 * 186.34612 * 27 15 14 50 50 H 1.09004 * 109.49609 * 298.56489 * 28 3 2 51 51 H 1.08994 * 109.50235 * 58.65871 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4760 2.1596 -1.1462 5 6 1.7620 1.7470 -2.4202 6 1 2.4462 0.9272 -2.5814 7 6 1.1725 2.3826 -3.5044 8 7 0.3383 3.3815 -3.3077 9 14 1.5633 1.8202 -5.2423 10 1 2.5229 0.6881 -5.1922 11 1 0.3134 1.3811 -5.9133 12 1 2.1646 2.9450 -6.0030 13 6 1.6115 2.1349 1.2958 14 6 2.0940 3.5887 1.2770 15 7 3.5433 3.6027 1.0361 16 6 4.3722 4.2582 1.8728 17 8 3.9235 4.8434 2.8356 18 6 5.8563 4.2638 1.6119 19 8 6.5160 5.0197 2.6295 20 6 7.9350 5.0877 2.4753 21 6 8.5236 5.9048 3.5966 22 6 8.6874 7.2753 3.4659 23 6 9.2364 7.9909 4.5131 24 7 9.6017 7.3848 5.6259 25 6 9.4607 6.0834 5.7851 26 6 8.9204 5.3027 4.7809 27 6 4.0714 2.8939 -0.1375 28 6 3.5672 1.4433 -0.0998 29 1 -0.3634 -1.0226 -0.1009 30 1 -0.3633 0.4241 0.9361 31 1 -0.3632 0.5988 -0.8353 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.8999 2.9266 -1.0026 35 1 -0.0740 3.8254 -4.0654 36 1 2.0513 1.6165 2.1479 37 1 0.5247 2.1132 1.3776 38 1 1.8786 4.0577 2.2370 39 1 1.5859 4.1320 0.4803 40 1 6.0526 4.7154 0.6394 41 1 6.2304 3.2401 1.6192 42 1 8.1747 5.5559 1.5205 43 1 8.3520 4.0810 2.5012 44 1 8.3904 7.7773 2.5569 45 1 9.3676 9.0587 4.4190 46 1 9.7712 5.6222 6.7111 47 1 8.8071 4.2373 4.9174 48 1 3.7212 3.3818 -1.0472 49 1 5.1610 2.9044 -0.1110 50 1 3.9886 0.9314 0.7654 51 1 3.8725 0.9294 -1.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570262789.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:02 Heat of formation + Delta-G solvation = -28.396442 kcal Electronic energy + Delta-G solvation = -30792.725348 eV Core-core repulsion = 26692.647206 eV Total energy + Delta-G solvation = -4100.078142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.49189 -40.09049 -38.42636 -37.41126 -34.79634 -33.51820 -32.67086 -31.51092 -31.03540 -30.38052 -29.19551 -28.32660 -26.48221 -24.84520 -23.84440 -23.77301 -22.67969 -22.32377 -21.58807 -19.56535 -18.19323 -17.53408 -17.10963 -16.98573 -16.88878 -16.42059 -16.02939 -15.88312 -15.46311 -14.89854 -14.50802 -14.14301 -14.07155 -14.04631 -13.95614 -13.85986 -13.64651 -13.37180 -12.96096 -12.88847 -12.44397 -12.32668 -12.21115 -11.91843 -11.83634 -11.61054 -11.30170 -11.13087 -10.95886 -10.80527 -10.68470 -10.38198 -10.24995 -10.12538 -10.06516 -10.01360 -9.79637 -9.70484 -9.52738 -9.44300 -9.40383 -8.97008 -8.26659 -7.00571 -5.83219 -3.11534 0.82101 0.84464 2.77001 2.82426 3.36356 3.42347 3.45303 3.47999 3.85392 4.17161 4.36753 4.37994 4.52048 4.67577 4.73822 4.80974 4.90794 4.97373 5.03058 5.09683 5.16359 5.30152 5.31005 5.32469 5.47717 5.49906 5.53431 5.63844 5.66941 5.72452 5.90985 5.93431 5.98945 6.09657 6.10542 6.16726 6.18993 6.37677 6.38726 6.44417 6.50161 6.60074 6.70171 6.76522 6.81674 6.94337 7.01609 7.17466 7.65870 7.65928 7.67455 8.34945 8.37012 9.46909 10.03662 10.39351 11.39023 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.002169 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.418180 B =12906.121139 C =13702.258257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C 0.201 3.799 4 N -0.713 5.713 5 C -0.230 4.230 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.899 3.101 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.294 1.294 13 C -0.130 4.130 14 C 0.118 3.882 15 N -0.597 5.597 16 C 0.513 3.487 17 O -0.534 6.534 18 C 0.045 3.955 19 O -0.356 6.356 20 C 0.098 3.902 21 C -0.043 4.043 22 C -0.150 4.150 23 C 0.095 3.905 24 N -0.484 5.484 25 C 0.095 3.905 26 C -0.151 4.151 27 C 0.113 3.887 28 C -0.135 4.135 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.137 0.863 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.137 0.863 48 H 0.093 0.907 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.760 0.679 11.787 19.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.110 3.890 4 N -0.355 5.355 5 C -0.361 4.361 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.578 5.578 9 Si 0.731 3.269 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.221 1.221 13 C -0.168 4.168 14 C -0.004 4.004 15 N -0.332 5.332 16 C 0.300 3.700 17 O -0.411 6.411 18 C -0.034 4.034 19 O -0.274 6.274 20 C 0.021 3.979 21 C -0.051 4.051 22 C -0.170 4.170 23 C -0.061 4.061 24 N -0.193 5.193 25 C -0.062 4.062 26 C -0.170 4.170 27 C -0.009 4.009 28 C -0.175 4.175 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.155 0.845 45 H 0.175 0.825 46 H 0.175 0.825 47 H 0.155 0.845 48 H 0.112 0.888 49 H 0.083 0.917 50 H 0.067 0.933 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.821 1.499 12.963 20.508 hybrid contribution -0.271 -0.869 -2.153 2.338 sum 15.550 0.630 10.810 18.948 Atomic orbital electron populations 1.21670 0.96069 1.00131 1.02055 1.21892 0.96464 0.97998 0.99871 1.19541 0.90734 0.91251 0.87504 1.42483 1.58064 1.34681 1.00224 1.19116 1.20938 1.13006 0.83043 0.91204 1.24692 0.99703 0.98815 0.97553 1.69658 1.33571 1.24934 1.29660 0.86240 0.77369 0.77643 0.85636 1.20707 1.22056 1.22094 1.22122 1.01474 0.95227 0.98023 1.21583 0.78901 0.97463 1.02425 1.48051 1.07521 1.51415 1.26180 1.20036 0.87689 0.79426 0.82890 1.90694 1.77486 1.43878 1.29054 1.22304 0.91835 0.96997 0.92284 1.88080 1.17433 1.73225 1.48666 1.21368 0.81887 0.98728 0.95871 1.19983 0.95895 0.94116 0.95103 1.22117 0.99753 0.94005 1.01122 1.22785 0.94357 1.00485 0.88509 1.67669 1.16214 1.11443 1.23970 1.22776 0.95382 0.89420 0.98606 1.22105 0.99414 1.01884 0.93644 1.21877 0.96744 0.93649 0.88603 1.22367 0.98872 0.95059 1.01205 0.94787 0.94232 0.90379 0.92215 0.94223 0.78121 0.93628 0.92034 0.90445 0.89921 0.90384 0.90063 0.90183 0.91613 0.91670 0.84488 0.82514 0.82547 0.84546 0.88831 0.91727 0.93261 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.39 37.16 0.35 -2.04 16 2 C -0.12 -2.03 4.78 -26.73 -0.13 -2.15 16 3 C 0.20 3.42 0.43 -131.78 -0.06 3.36 16 4 N -0.71 -14.99 3.06 -47.19 -0.14 -15.13 16 5 C -0.23 -5.48 8.72 -15.06 -0.13 -5.62 16 6 H 0.07 1.65 6.73 -52.49 -0.35 1.29 16 7 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 8 N -0.93 -25.91 13.06 55.49 0.72 -25.19 16 9 Si 0.90 20.92 29.55 -169.99 -5.02 15.90 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 C -0.13 -2.02 4.71 -26.61 -0.13 -2.14 16 14 C 0.12 1.93 6.16 -3.71 -0.02 1.91 16 15 N -0.60 -9.28 2.97 -172.51 -0.51 -9.79 16 16 C 0.51 8.20 7.78 -10.98 -0.09 8.12 16 17 O -0.53 -10.63 15.91 -14.35 -0.23 -10.86 16 18 C 0.05 0.54 4.76 36.00 0.17 0.71 16 19 O -0.36 -4.67 9.86 -55.14 -0.54 -5.21 16 20 C 0.10 0.88 6.11 36.01 0.22 1.10 16 21 C -0.04 -0.42 5.55 -104.31 -0.58 -0.99 16 22 C -0.15 -1.37 9.82 -39.44 -0.39 -1.76 16 23 C 0.10 0.88 11.18 -17.55 -0.20 0.69 16 24 N -0.48 -5.18 10.36 -13.25 -0.14 -5.31 16 25 C 0.09 0.87 11.18 -17.55 -0.20 0.67 16 26 C -0.15 -1.35 9.82 -39.44 -0.39 -1.74 16 27 C 0.11 1.66 6.11 -3.48 -0.02 1.64 16 28 C -0.13 -2.05 4.69 -26.39 -0.12 -2.17 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.61 6.79 -51.93 -0.35 0.25 16 31 H 0.08 1.58 7.31 -51.93 -0.38 1.20 16 32 H 0.06 1.07 7.60 -51.93 -0.39 0.67 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.38 8.95 6.54 -40.82 -0.27 8.68 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.20 6.60 -51.92 -0.34 0.86 16 38 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 39 H 0.08 1.40 6.98 -51.93 -0.36 1.04 16 40 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 41 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 42 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 43 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 44 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 46 H 0.16 0.99 8.06 -52.48 -0.42 0.57 16 47 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.09 1.64 7.72 -51.93 -0.40 1.24 16 49 H 0.06 0.73 5.93 -51.93 -0.31 0.42 16 50 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 51 H 0.08 1.22 7.14 -51.93 -0.37 0.85 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -31.54 404.08 -9.64 -41.18 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.07 Total: 9.16 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.80 Total: -0.82 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.07 Total: -55.43 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.77 Total: -16.07 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.54 -9.64 -41.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570262789.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.782 kcal (2) G-P(sol) polarization free energy of solvation -31.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds