Wall clock time and date at job start Wed Apr 1 2020 05:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47451 * 2 1 4 4 N 1.46504 * 109.45996 * 303.92366 * 3 2 1 5 5 C 1.36934 * 119.99868 * 297.81222 * 4 3 2 6 6 H 1.07994 * 119.99858 * 356.64099 * 5 4 3 7 7 C 1.38816 * 119.99816 * 176.64280 * 5 4 3 8 8 N 1.31618 * 119.99762 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99714 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47199 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47069 * 120.00036 * 9 7 5 12 12 H 1.48505 * 109.46692 * 239.99591 * 9 7 5 13 13 C 1.53043 * 109.46410 * 63.89672 * 3 2 1 14 14 C 1.53191 * 109.31688 * 181.38770 * 13 3 2 15 15 N 1.46919 * 108.77108 * 305.36492 * 14 13 3 16 16 C 1.34784 * 120.63015 * 233.58544 * 15 14 13 17 17 O 1.21279 * 119.99822 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00126 * 180.02562 * 16 15 14 19 19 O 1.42900 * 109.46993 * 179.97438 * 18 16 15 20 20 C 1.42899 * 113.99859 * 179.97438 * 19 18 16 21 21 C 1.50706 * 109.47397 * 179.97438 * 20 19 18 22 22 C 1.38646 * 120.79118 * 269.72882 * 21 20 19 23 23 C 1.38206 * 119.16126 * 180.29372 * 22 21 20 24 24 N 1.31874 * 120.76479 * 359.97271 * 23 22 21 25 25 C 1.31869 * 121.72379 * 0.02562 * 24 23 22 26 26 C 1.38203 * 120.76880 * 0.02562 * 25 24 23 27 27 C 1.46930 * 118.74416 * 53.86113 * 15 14 13 28 28 C 1.53038 * 109.46231 * 183.96713 * 3 2 1 29 29 H 1.08995 * 109.47449 * 174.36401 * 1 2 3 30 30 H 1.09000 * 109.46896 * 294.37105 * 1 2 3 31 31 H 1.09003 * 109.46496 * 54.36325 * 1 2 3 32 32 H 1.08998 * 109.47012 * 239.99560 * 2 1 3 33 33 H 1.09005 * 109.46850 * 119.99852 * 2 1 3 34 34 H 0.96999 * 119.99402 * 117.81045 * 4 3 2 35 35 H 0.97003 * 119.99584 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.49826 * 61.42988 * 13 3 2 37 37 H 1.09010 * 109.49479 * 301.34191 * 13 3 2 38 38 H 1.08998 * 109.58680 * 185.57853 * 14 13 3 39 39 H 1.08997 * 109.58455 * 65.15086 * 14 13 3 40 40 H 1.09002 * 109.47372 * 59.99696 * 18 16 15 41 41 H 1.08997 * 109.47210 * 299.99485 * 18 16 15 42 42 H 1.09006 * 109.47075 * 60.00179 * 20 19 18 43 43 H 1.08997 * 109.47806 * 300.00171 * 20 19 18 44 44 H 1.07996 * 120.41983 * 0.24295 * 22 21 20 45 45 H 1.08001 * 119.61889 * 179.97438 * 23 22 21 46 46 H 1.08003 * 119.61933 * 180.02562 * 25 24 23 47 47 H 1.08002 * 120.42325 * 180.02562 * 26 25 24 48 48 H 1.09003 * 109.58423 * 65.92419 * 27 15 14 49 49 H 1.08994 * 109.58595 * 186.34612 * 27 15 14 50 50 H 1.09004 * 109.49609 * 298.56489 * 28 3 2 51 51 H 1.08994 * 109.50235 * 58.65871 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4760 2.1596 -1.1462 5 6 1.7620 1.7470 -2.4202 6 1 2.4462 0.9272 -2.5814 7 6 1.1725 2.3826 -3.5044 8 7 0.3383 3.3815 -3.3077 9 14 1.5633 1.8202 -5.2423 10 1 2.5229 0.6881 -5.1922 11 1 0.3134 1.3811 -5.9133 12 1 2.1646 2.9450 -6.0030 13 6 1.6115 2.1349 1.2958 14 6 2.0940 3.5887 1.2770 15 7 3.5433 3.6027 1.0361 16 6 4.3722 4.2582 1.8728 17 8 3.9235 4.8434 2.8356 18 6 5.8563 4.2638 1.6119 19 8 6.5160 5.0197 2.6295 20 6 7.9350 5.0877 2.4753 21 6 8.5236 5.9048 3.5966 22 6 8.6874 7.2753 3.4659 23 6 9.2364 7.9909 4.5131 24 7 9.6017 7.3848 5.6259 25 6 9.4607 6.0834 5.7851 26 6 8.9204 5.3027 4.7809 27 6 4.0714 2.8939 -0.1375 28 6 3.5672 1.4433 -0.0998 29 1 -0.3634 -1.0226 -0.1009 30 1 -0.3633 0.4241 0.9361 31 1 -0.3632 0.5988 -0.8353 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.8999 2.9266 -1.0026 35 1 -0.0740 3.8254 -4.0654 36 1 2.0513 1.6165 2.1479 37 1 0.5247 2.1132 1.3776 38 1 1.8786 4.0577 2.2370 39 1 1.5859 4.1320 0.4803 40 1 6.0526 4.7154 0.6394 41 1 6.2304 3.2401 1.6192 42 1 8.1747 5.5559 1.5205 43 1 8.3520 4.0810 2.5012 44 1 8.3904 7.7773 2.5569 45 1 9.3676 9.0587 4.4190 46 1 9.7712 5.6222 6.7111 47 1 8.8071 4.2373 4.9174 48 1 3.7212 3.3818 -1.0472 49 1 5.1610 2.9044 -0.1110 50 1 3.9886 0.9314 0.7654 51 1 3.8725 0.9294 -1.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570262789.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:01 Heat of formation + Delta-G solvation = -46.677989 kcal Electronic energy + Delta-G solvation = -30793.518096 eV Core-core repulsion = 26692.647206 eV Total energy + Delta-G solvation = -4100.870889 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.41011 -41.07812 -39.61578 -38.45049 -36.20247 -34.44870 -34.21222 -32.29576 -32.14861 -31.77753 -30.80258 -29.29691 -27.31201 -26.19249 -25.56803 -24.42151 -24.00230 -22.99622 -22.85245 -20.83060 -19.55857 -18.88339 -18.55269 -17.74248 -17.70584 -17.39116 -16.96592 -16.66097 -16.49084 -16.34984 -15.87238 -15.49833 -15.38646 -15.29604 -14.98916 -14.75367 -14.65459 -14.51088 -14.27535 -14.02171 -13.83526 -13.48298 -13.25235 -12.99113 -12.86258 -12.84052 -12.72732 -12.55810 -12.45938 -12.24749 -12.08461 -12.02546 -11.76092 -11.51805 -11.40961 -10.95811 -10.87733 -10.77617 -10.76174 -10.58859 -10.47546 -10.09111 -9.59851 -8.81235 -7.80631 -5.04855 0.13391 0.19668 1.50126 1.53117 1.57059 1.59938 1.78906 2.64540 2.67995 3.07359 3.48750 3.54284 3.59242 3.78740 3.82040 3.86896 3.96928 4.02266 4.12680 4.17142 4.19679 4.20926 4.26565 4.29261 4.43751 4.45223 4.45812 4.62323 4.65184 4.70164 4.74393 4.79159 4.84495 4.88573 4.89829 4.98691 5.09037 5.16190 5.21535 5.28560 5.34451 5.39876 5.41646 5.58196 5.67404 5.69087 5.75244 5.78332 6.00007 6.41240 6.48036 6.99640 7.15552 7.49018 8.26009 8.49070 9.43233 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.002169 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.418180 B =12906.121139 C =13702.258257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.192 3.808 4 N -0.716 5.716 5 C -0.196 4.196 6 H 0.079 0.921 7 C -0.077 4.077 8 N -0.970 5.970 9 Si 0.951 3.049 10 H -0.264 1.264 11 H -0.308 1.308 12 H -0.303 1.303 13 C -0.119 4.119 14 C 0.121 3.879 15 N -0.596 5.596 16 C 0.507 3.493 17 O -0.581 6.581 18 C 0.051 3.949 19 O -0.389 6.389 20 C 0.096 3.904 21 C -0.061 4.061 22 C -0.159 4.159 23 C 0.083 3.917 24 N -0.511 5.511 25 C 0.083 3.917 26 C -0.156 4.156 27 C 0.117 3.883 28 C -0.130 4.130 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.370 0.630 35 H 0.242 0.758 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.151 0.849 45 H 0.176 0.824 46 H 0.179 0.821 47 H 0.156 0.844 48 H 0.060 0.940 49 H 0.108 0.892 50 H 0.077 0.923 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.271 -1.354 12.575 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.158 4.158 3 C 0.102 3.898 4 N -0.356 5.356 5 C -0.328 4.328 6 H 0.097 0.903 7 C -0.269 4.269 8 N -0.623 5.623 9 Si 0.784 3.216 10 H -0.189 1.189 11 H -0.237 1.237 12 H -0.232 1.232 13 C -0.158 4.158 14 C -0.002 4.002 15 N -0.329 5.329 16 C 0.296 3.704 17 O -0.462 6.462 18 C -0.028 4.028 19 O -0.308 6.308 20 C 0.021 3.979 21 C -0.069 4.069 22 C -0.179 4.179 23 C -0.073 4.073 24 N -0.221 5.221 25 C -0.073 4.073 26 C -0.175 4.175 27 C -0.005 4.005 28 C -0.170 4.170 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.203 0.797 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.122 0.878 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.169 0.831 45 H 0.193 0.807 46 H 0.196 0.804 47 H 0.173 0.827 48 H 0.078 0.922 49 H 0.126 0.874 50 H 0.096 0.904 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.388 -0.593 13.760 22.974 hybrid contribution -1.026 -0.261 -2.268 2.503 sum 17.362 -0.854 11.492 20.838 Atomic orbital electron populations 1.21593 0.96580 1.00287 1.01009 1.21856 0.95951 0.97353 1.00662 1.19857 0.92119 0.91279 0.86502 1.42616 1.57793 1.34490 1.00722 1.19401 1.18369 1.11139 0.83940 0.90336 1.25279 1.01146 0.99983 1.00492 1.69804 1.35974 1.26995 1.29523 0.85374 0.76625 0.77275 0.82355 1.18867 1.23662 1.23157 1.22028 1.01421 0.94459 0.97842 1.21403 0.79947 0.97809 1.01035 1.48098 1.07018 1.51376 1.26394 1.20871 0.89590 0.78062 0.81885 1.90672 1.78673 1.45718 1.31093 1.22346 0.88491 0.99110 0.92876 1.88033 1.19640 1.73760 1.49390 1.21573 0.79850 1.00190 0.96324 1.20287 0.96210 0.94577 0.95829 1.22360 0.99605 0.94231 1.01658 1.23167 0.94233 1.01579 0.88351 1.67690 1.17198 1.12400 1.24809 1.23205 0.95237 0.89191 0.99664 1.22372 0.98923 1.02894 0.93338 1.21876 0.99156 0.92686 0.86741 1.22308 0.96898 0.95583 1.02239 0.93398 0.92927 0.94410 0.93490 0.91223 0.79735 0.94851 0.90097 0.90788 0.90609 0.92937 0.87846 0.86766 0.89848 0.89263 0.83112 0.80657 0.80444 0.82672 0.92206 0.87434 0.90410 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 9.39 71.98 0.68 -3.75 16 2 C -0.12 -3.61 4.78 30.59 0.15 -3.46 16 3 C 0.19 6.15 0.43 3.63 0.00 6.15 16 4 N -0.72 -30.08 3.06 -303.23 -0.93 -31.01 16 5 C -0.20 -9.29 8.72 84.04 0.73 -8.55 16 6 H 0.08 3.56 6.73 -2.91 -0.02 3.54 16 7 C -0.08 -4.07 5.50 84.86 0.47 -3.61 16 8 N -0.97 -56.01 13.06 21.65 0.28 -55.72 16 9 Si 0.95 43.54 29.55 68.60 2.03 45.57 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.31 -14.71 7.11 99.48 0.71 -14.00 16 12 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 13 C -0.12 -3.51 4.71 30.67 0.14 -3.36 16 14 C 0.12 3.93 6.16 86.36 0.53 4.46 16 15 N -0.60 -17.49 2.97 -818.08 -2.43 -19.91 16 16 C 0.51 15.27 7.78 87.65 0.68 15.95 16 17 O -0.58 -22.91 15.91 16.01 0.25 -22.65 16 18 C 0.05 1.02 4.76 71.23 0.34 1.36 16 19 O -0.39 -9.19 9.86 -129.94 -1.28 -10.47 16 20 C 0.10 1.43 6.11 71.24 0.44 1.87 16 21 C -0.06 -1.07 5.55 -19.66 -0.11 -1.18 16 22 C -0.16 -2.71 9.82 22.36 0.22 -2.49 16 23 C 0.08 1.48 11.18 84.68 0.95 2.42 16 24 N -0.51 -10.60 10.36 -195.84 -2.03 -12.63 16 25 C 0.08 1.43 11.18 84.68 0.95 2.38 16 26 C -0.16 -2.51 9.82 22.36 0.22 -2.29 16 27 C 0.12 3.10 6.11 86.51 0.53 3.63 16 28 C -0.13 -3.51 4.69 30.82 0.14 -3.37 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.53 6.79 -2.39 -0.02 1.51 16 31 H 0.04 1.52 7.31 -2.39 -0.02 1.50 16 32 H 0.05 1.55 7.60 -2.39 -0.02 1.53 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.37 17.74 6.54 -92.71 -0.61 17.13 16 35 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 36 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.07 2.23 6.60 -2.38 -0.02 2.21 16 38 H 0.08 2.57 7.00 -2.39 -0.02 2.55 16 39 H 0.05 1.97 6.98 -2.39 -0.02 1.95 16 40 H 0.10 1.63 7.93 -2.39 -0.02 1.61 16 41 H 0.11 1.52 7.70 -2.39 -0.02 1.50 16 42 H 0.08 0.92 8.10 -2.38 -0.02 0.90 16 43 H 0.09 0.88 8.10 -2.39 -0.02 0.86 16 44 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 45 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 46 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 47 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 48 H 0.06 2.03 7.72 -2.39 -0.02 2.01 16 49 H 0.11 1.92 5.93 -2.39 -0.01 1.91 16 50 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 51 H 0.07 2.03 7.14 -2.39 -0.02 2.02 16 Total: -1.00 -71.26 404.08 3.28 -67.99 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.33 Total: 32.70 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 7.05 Total: 6.15 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -5.10 Total: -119.28 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -1.03 Total: -33.12 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -71.26 3.28 -67.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570262789.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.308 kcal (2) G-P(sol) polarization free energy of solvation -71.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds