Wall clock time and date at job start Wed Apr 1 2020 04:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47387 * 2 1 4 4 C 1.38031 * 119.51149 * 124.72943 * 3 2 1 5 5 C 1.39924 * 119.13373 * 179.73750 * 4 3 2 6 6 C 1.48160 * 120.89578 * 180.24017 * 5 4 3 7 7 O 1.21513 * 119.99755 * 37.74521 * 6 5 4 8 8 N 1.34776 * 120.00422 * 217.74845 * 6 5 4 9 9 C 1.46927 * 120.62731 * 6.23652 * 8 6 5 10 10 C 1.53619 * 108.54343 * 126.36941 * 9 8 6 11 11 C 1.53037 * 109.24211 * 54.85647 * 10 9 8 12 12 H 1.08997 * 109.45006 * 58.52265 * 11 10 9 13 13 C 1.53001 * 109.46101 * 178.49015 * 11 10 9 14 14 C 1.53041 * 109.53725 * 298.50972 * 11 10 9 15 15 C 1.46921 * 120.63110 * 186.51689 * 8 6 5 16 16 H 1.08995 * 109.58529 * 113.65760 * 15 8 6 17 17 C 1.52994 * 109.58895 * 353.37255 * 15 8 6 18 18 N 1.46499 * 109.47534 * 69.39452 * 17 15 8 19 19 C 1.36931 * 120.00576 * 175.32927 * 18 17 15 20 20 H 1.08006 * 119.99792 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00629 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00833 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99486 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47167 * 90.00484 * 23 21 19 25 25 H 1.48505 * 109.46908 * 209.99950 * 23 21 19 26 26 H 1.48496 * 109.47214 * 329.99960 * 23 21 19 27 27 C 1.39613 * 118.21348 * 0.52311 * 5 4 3 28 28 C 1.38856 * 118.95111 * 359.74004 * 27 5 4 29 29 O 1.35682 * 119.61896 * 180.02562 * 28 27 5 30 30 N 1.31875 * 119.51891 * 305.00408 * 3 2 1 31 31 H 1.09002 * 109.46978 * 299.99938 * 1 2 3 32 32 H 1.09004 * 109.47143 * 59.99594 * 1 2 3 33 33 H 1.08998 * 109.47532 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46978 * 240.00062 * 2 1 3 35 35 H 1.08998 * 109.46712 * 120.00515 * 2 1 3 36 36 H 1.08006 * 120.43058 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.58788 * 246.20520 * 9 8 6 38 38 H 1.09007 * 109.58738 * 6.62359 * 9 8 6 39 39 H 1.09005 * 109.63626 * 294.86237 * 10 9 8 40 40 H 1.08998 * 109.45699 * 174.73851 * 10 9 8 41 41 H 1.09004 * 109.47239 * 180.02562 * 13 11 10 42 42 H 1.08999 * 109.47056 * 300.06889 * 13 11 10 43 43 H 1.09004 * 109.47286 * 60.07024 * 13 11 10 44 44 H 1.08997 * 109.50208 * 301.41671 * 14 11 10 45 45 H 1.09004 * 109.49857 * 181.31934 * 14 11 10 46 46 H 1.09001 * 109.47485 * 189.39907 * 17 15 8 47 47 H 1.09002 * 109.46903 * 309.39489 * 17 15 8 48 48 H 0.97008 * 119.99538 * 355.33393 * 18 17 15 49 49 H 0.96999 * 120.00527 * 180.02562 * 22 21 19 50 50 H 1.08001 * 120.52426 * 179.71318 * 27 5 4 51 51 H 0.96698 * 114.00251 * 269.97167 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9042 1.8336 0.9872 5 6 3.3701 3.1530 0.9765 6 6 4.3109 3.6361 2.0140 7 8 5.1877 2.9034 2.4276 8 7 4.1944 4.8881 2.4992 9 6 3.0607 5.7385 2.1116 10 6 2.3735 6.2480 3.3875 11 6 3.4081 6.9458 4.2733 12 1 3.8610 7.7699 3.7222 13 6 2.7216 7.4883 5.5284 14 6 4.4934 5.9455 4.6779 15 6 5.2017 5.4305 3.4209 16 1 5.7353 6.2493 2.9383 17 6 6.1917 4.3290 3.8049 18 7 7.0128 3.9832 2.6420 19 6 8.0381 3.0847 2.7705 20 1 8.2417 2.6312 3.7293 21 6 8.8165 2.7575 1.6687 22 7 9.8016 1.8935 1.7921 23 14 8.4647 3.5424 0.0105 24 1 9.2491 4.7966 -0.1198 25 1 8.8497 2.6030 -1.0734 26 1 7.0160 3.8514 -0.0936 27 6 2.9198 4.0037 -0.0348 28 6 2.0380 3.5088 -0.9864 29 8 1.5921 4.3236 -1.9755 30 7 1.6283 2.2528 -0.9400 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5139 0.8899 36 1 3.2263 1.1459 1.7553 37 1 3.4215 6.5836 1.5252 38 1 2.3528 5.1569 1.5209 39 1 1.9378 5.4084 3.9292 40 1 1.5882 6.9548 3.1195 41 1 3.4583 7.9858 6.1593 42 1 1.9485 8.2008 5.2405 43 1 2.2690 6.6643 6.0801 44 1 4.0379 5.1087 5.2073 45 1 5.2173 6.4371 5.3278 46 1 6.8342 4.6828 4.6111 47 1 5.6434 3.4476 4.1375 48 1 6.8302 4.3909 1.7809 49 1 10.3458 1.6651 1.0223 50 1 3.2518 5.0306 -0.0761 51 1 0.7805 4.8011 -1.7559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656559303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:38 Heat of formation + Delta-G solvation = 11.485881 kcal Electronic energy + Delta-G solvation = -32486.240506 eV Core-core repulsion = 28387.891792 eV Total energy + Delta-G solvation = -4098.348715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.11634 -39.97612 -37.69965 -37.25743 -35.07526 -34.22872 -33.54876 -32.43422 -31.64488 -30.33356 -29.52345 -28.47086 -25.83117 -25.13633 -24.02772 -23.49978 -22.46647 -22.16955 -21.23387 -20.15717 -19.46885 -18.46228 -17.45785 -16.92573 -16.55294 -16.08274 -15.76512 -15.57975 -15.10996 -14.76852 -14.52437 -14.43234 -14.19027 -14.08336 -13.75515 -13.67268 -13.46675 -13.13276 -13.00564 -12.65870 -12.56242 -12.39512 -12.07844 -12.06671 -11.94078 -11.89848 -11.75694 -11.57931 -11.33553 -11.19847 -11.12370 -10.89284 -10.79456 -10.59766 -10.27011 -10.04897 -9.79406 -9.68485 -9.44166 -8.89817 -8.85998 -8.59252 -8.32017 -6.88789 -5.61020 -2.87472 0.78102 0.86005 2.94647 3.05171 3.43326 3.46284 3.49490 3.53329 3.63877 4.33286 4.37570 4.54675 4.61994 4.68463 4.73487 4.86502 4.89040 4.96267 5.01600 5.09835 5.15757 5.16957 5.28021 5.36143 5.39409 5.43120 5.52297 5.56134 5.57884 5.61223 5.69097 5.71325 5.73718 5.75577 5.86373 5.91270 5.92562 5.94181 6.01085 6.04407 6.09609 6.12973 6.31715 6.33564 6.47932 6.75290 7.09543 7.28587 7.62942 7.77598 8.14230 8.54344 8.59096 9.37270 10.10593 10.30441 11.58564 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007009 B = 0.005250 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3994.139035 B = 5332.395165 C = 7804.213350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.074 4.074 3 C 0.152 3.848 4 C -0.132 4.132 5 C -0.047 4.047 6 C 0.512 3.488 7 O -0.428 6.428 8 N -0.609 5.609 9 C 0.099 3.901 10 C -0.128 4.128 11 C -0.092 4.092 12 H 0.071 0.929 13 C -0.145 4.145 14 C -0.120 4.120 15 C 0.139 3.861 16 H 0.071 0.929 17 C 0.163 3.837 18 N -0.723 5.723 19 C -0.211 4.211 20 H 0.088 0.912 21 C -0.001 4.001 22 N -0.940 5.940 23 Si 0.881 3.119 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.283 1.283 27 C -0.172 4.172 28 C 0.308 3.692 29 O -0.479 6.479 30 N -0.493 5.493 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.027 0.973 47 H 0.051 0.949 48 H 0.355 0.645 49 H 0.256 0.744 50 H 0.146 0.854 51 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.101 8.605 1.589 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C 0.015 3.985 4 C -0.152 4.152 5 C -0.058 4.058 6 C 0.296 3.704 7 O -0.296 6.296 8 N -0.347 5.347 9 C -0.025 4.025 10 C -0.166 4.166 11 C -0.111 4.111 12 H 0.089 0.911 13 C -0.202 4.202 14 C -0.159 4.159 15 C 0.037 3.963 16 H 0.088 0.912 17 C 0.036 3.964 18 N -0.367 5.367 19 C -0.342 4.342 20 H 0.106 0.894 21 C -0.195 4.195 22 N -0.590 5.590 23 Si 0.713 3.287 24 H -0.215 1.215 25 H -0.220 1.220 26 H -0.209 1.209 27 C -0.194 4.194 28 C 0.129 3.871 29 O -0.285 6.285 30 N -0.214 5.214 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.166 0.834 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.044 0.956 47 H 0.068 0.932 48 H 0.188 0.812 49 H 0.066 0.934 50 H 0.164 0.836 51 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -23.490 7.568 0.982 24.699 hybrid contribution -0.008 1.193 -0.763 1.417 sum -23.498 8.761 0.218 25.079 Atomic orbital electron populations 1.21665 0.94050 1.01764 1.02472 1.20536 0.96973 0.89899 1.03807 1.20928 0.92960 0.95677 0.88953 1.22103 0.97076 0.95375 1.00677 1.20545 0.95417 0.94155 0.95727 1.18200 0.85337 0.83140 0.83726 1.91236 1.29145 1.53985 1.55231 1.47753 1.25461 1.13384 1.48120 1.22119 0.88744 0.94739 0.96864 1.22058 0.97820 1.00420 0.96288 1.21123 0.95826 0.97760 0.96394 0.91078 1.21812 1.00308 1.00717 0.97395 1.21963 0.97804 0.98914 0.97247 1.21610 0.88374 0.97323 0.89036 0.91155 1.20920 0.90686 0.94074 0.90759 1.42654 1.35982 1.51678 1.06418 1.19001 1.02986 1.15300 0.96890 0.89448 1.24549 0.98401 0.99594 0.96955 1.69687 1.22244 1.37377 1.29698 0.86584 0.77270 0.78787 0.86103 1.21510 1.21989 1.20937 1.22423 1.00597 1.01766 0.94572 1.18935 0.93932 0.87278 0.86981 1.84836 1.46486 1.58167 1.39042 1.66711 1.26648 1.03867 1.24138 0.92943 0.91678 0.92238 0.89630 0.89715 0.83419 0.91612 0.89407 0.91458 0.91092 0.92557 0.92883 0.92730 0.91248 0.90541 0.95565 0.93170 0.81242 0.93401 0.83627 0.74618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.77 37.16 0.36 -0.87 16 2 C -0.07 -0.76 6.33 -27.89 -0.18 -0.94 16 3 C 0.15 2.02 6.18 -82.65 -0.51 1.51 16 4 C -0.13 -1.92 9.34 -39.03 -0.36 -2.28 16 5 C -0.05 -0.73 5.22 -104.68 -0.55 -1.28 16 6 C 0.51 9.11 6.78 -12.19 -0.08 9.03 16 7 O -0.43 -9.68 10.75 5.35 0.06 -9.62 16 8 N -0.61 -8.87 2.97 -165.95 -0.49 -9.36 16 9 C 0.10 1.01 4.89 -3.49 -0.02 0.99 16 10 C -0.13 -1.09 5.38 -26.39 -0.14 -1.23 16 11 C -0.09 -0.83 2.68 -90.58 -0.24 -1.07 16 12 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 13 C -0.14 -1.10 9.19 37.16 0.34 -0.76 16 14 C -0.12 -1.38 4.64 -26.61 -0.12 -1.50 16 15 C 0.14 2.11 2.92 -67.60 -0.20 1.91 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C 0.16 3.28 4.87 -4.05 -0.02 3.26 16 18 N -0.72 -18.15 3.05 -59.91 -0.18 -18.33 16 19 C -0.21 -6.31 10.19 -15.06 -0.15 -6.47 16 20 H 0.09 2.80 8.06 -52.48 -0.42 2.37 16 21 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 22 N -0.94 -31.07 13.97 55.49 0.78 -30.30 16 23 Si 0.88 24.04 27.74 -169.99 -4.71 19.32 16 24 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 25 H -0.29 -8.14 7.11 56.52 0.40 -7.73 16 26 H -0.28 -7.51 6.52 56.52 0.37 -7.14 16 27 C -0.17 -2.32 7.42 -38.84 -0.29 -2.61 16 28 C 0.31 4.08 7.74 -17.17 -0.13 3.94 16 29 O -0.48 -5.28 13.56 -18.75 -0.25 -5.53 16 30 N -0.49 -6.88 9.87 -9.60 -0.09 -6.98 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.62 7.94 -51.93 -0.41 0.21 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 36 H 0.15 2.09 7.94 -52.48 -0.42 1.67 16 37 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 38 H 0.09 0.84 4.63 -51.93 -0.24 0.60 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 47 H 0.05 1.10 6.29 -51.93 -0.33 0.78 16 48 H 0.36 8.96 4.95 -40.82 -0.20 8.76 16 49 H 0.26 8.09 8.31 -40.82 -0.34 7.76 16 50 H 0.15 1.74 6.40 -52.49 -0.34 1.40 16 51 H 0.40 2.09 9.06 45.56 0.41 2.50 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -37.68 397.03 -8.75 -46.43 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -7.44 Total: 6.87 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -2.39 Total: 1.52 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: 0.01 Total: -64.97 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.20 Total: -15.15 kcal Atomic # 14 Polarization: 24.04 SS G_CDS: -4.71 Total: 19.32 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.68 -8.75 -46.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656559303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.915 kcal (2) G-P(sol) polarization free energy of solvation -37.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds