Wall clock time and date at job start Wed Apr 1 2020 04:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50692 * 109.47387 * 2 1 4 4 C 1.38031 * 119.51149 * 124.72943 * 3 2 1 5 5 C 1.39924 * 119.13373 * 179.73750 * 4 3 2 6 6 C 1.48160 * 120.89578 * 180.24017 * 5 4 3 7 7 O 1.21513 * 119.99755 * 37.74521 * 6 5 4 8 8 N 1.34776 * 120.00422 * 217.74845 * 6 5 4 9 9 C 1.46927 * 120.62731 * 6.23652 * 8 6 5 10 10 C 1.53619 * 108.54343 * 126.36941 * 9 8 6 11 11 C 1.53037 * 109.24211 * 54.85647 * 10 9 8 12 12 H 1.08997 * 109.45006 * 58.52265 * 11 10 9 13 13 C 1.53001 * 109.46101 * 178.49015 * 11 10 9 14 14 C 1.53041 * 109.53725 * 298.50972 * 11 10 9 15 15 C 1.46921 * 120.63110 * 186.51689 * 8 6 5 16 16 H 1.08995 * 109.58529 * 113.65760 * 15 8 6 17 17 C 1.52994 * 109.58895 * 353.37255 * 15 8 6 18 18 N 1.46499 * 109.47534 * 69.39452 * 17 15 8 19 19 C 1.36931 * 120.00576 * 175.32927 * 18 17 15 20 20 H 1.08006 * 119.99792 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00629 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00833 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99486 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47167 * 90.00484 * 23 21 19 25 25 H 1.48505 * 109.46908 * 209.99950 * 23 21 19 26 26 H 1.48496 * 109.47214 * 329.99960 * 23 21 19 27 27 C 1.39613 * 118.21348 * 0.52311 * 5 4 3 28 28 C 1.38856 * 118.95111 * 359.74004 * 27 5 4 29 29 O 1.35682 * 119.61896 * 180.02562 * 28 27 5 30 30 N 1.31875 * 119.51891 * 305.00408 * 3 2 1 31 31 H 1.09002 * 109.46978 * 299.99938 * 1 2 3 32 32 H 1.09004 * 109.47143 * 59.99594 * 1 2 3 33 33 H 1.08998 * 109.47532 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46978 * 240.00062 * 2 1 3 35 35 H 1.08998 * 109.46712 * 120.00515 * 2 1 3 36 36 H 1.08006 * 120.43058 * 0.02562 * 4 3 2 37 37 H 1.09005 * 109.58788 * 246.20520 * 9 8 6 38 38 H 1.09007 * 109.58738 * 6.62359 * 9 8 6 39 39 H 1.09005 * 109.63626 * 294.86237 * 10 9 8 40 40 H 1.08998 * 109.45699 * 174.73851 * 10 9 8 41 41 H 1.09004 * 109.47239 * 180.02562 * 13 11 10 42 42 H 1.08999 * 109.47056 * 300.06889 * 13 11 10 43 43 H 1.09004 * 109.47286 * 60.07024 * 13 11 10 44 44 H 1.08997 * 109.50208 * 301.41671 * 14 11 10 45 45 H 1.09004 * 109.49857 * 181.31934 * 14 11 10 46 46 H 1.09001 * 109.47485 * 189.39907 * 17 15 8 47 47 H 1.09002 * 109.46903 * 309.39489 * 17 15 8 48 48 H 0.97008 * 119.99538 * 355.33393 * 18 17 15 49 49 H 0.96999 * 120.00527 * 180.02562 * 22 21 19 50 50 H 1.08001 * 120.52426 * 179.71318 * 27 5 4 51 51 H 0.96698 * 114.00251 * 269.97167 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9042 1.8336 0.9872 5 6 3.3701 3.1530 0.9765 6 6 4.3109 3.6361 2.0140 7 8 5.1877 2.9034 2.4276 8 7 4.1944 4.8881 2.4992 9 6 3.0607 5.7385 2.1116 10 6 2.3735 6.2480 3.3875 11 6 3.4081 6.9458 4.2733 12 1 3.8610 7.7699 3.7222 13 6 2.7216 7.4883 5.5284 14 6 4.4934 5.9455 4.6779 15 6 5.2017 5.4305 3.4209 16 1 5.7353 6.2493 2.9383 17 6 6.1917 4.3290 3.8049 18 7 7.0128 3.9832 2.6420 19 6 8.0381 3.0847 2.7705 20 1 8.2417 2.6312 3.7293 21 6 8.8165 2.7575 1.6687 22 7 9.8016 1.8935 1.7921 23 14 8.4647 3.5424 0.0105 24 1 9.2491 4.7966 -0.1198 25 1 8.8497 2.6030 -1.0734 26 1 7.0160 3.8514 -0.0936 27 6 2.9198 4.0037 -0.0348 28 6 2.0380 3.5088 -0.9864 29 8 1.5921 4.3236 -1.9755 30 7 1.6283 2.2528 -0.9400 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5139 0.8899 36 1 3.2263 1.1459 1.7553 37 1 3.4215 6.5836 1.5252 38 1 2.3528 5.1569 1.5209 39 1 1.9378 5.4084 3.9292 40 1 1.5882 6.9548 3.1195 41 1 3.4583 7.9858 6.1593 42 1 1.9485 8.2008 5.2405 43 1 2.2690 6.6643 6.0801 44 1 4.0379 5.1087 5.2073 45 1 5.2173 6.4371 5.3278 46 1 6.8342 4.6828 4.6111 47 1 5.6434 3.4476 4.1375 48 1 6.8302 4.3909 1.7809 49 1 10.3458 1.6651 1.0223 50 1 3.2518 5.0306 -0.0761 51 1 0.7805 4.8011 -1.7559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656559303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:37 Heat of formation + Delta-G solvation = -17.163659 kcal Electronic energy + Delta-G solvation = -32487.482844 eV Core-core repulsion = 28387.891792 eV Total energy + Delta-G solvation = -4099.591052 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.26071 -41.10942 -38.73930 -38.24597 -36.73333 -35.40707 -34.61123 -33.92472 -32.99778 -31.98002 -30.47607 -29.41542 -27.36388 -26.22954 -25.06682 -24.36306 -24.10157 -23.37581 -22.50890 -21.14906 -20.51600 -19.83118 -19.18066 -18.08183 -17.65641 -17.18620 -16.90747 -16.70771 -16.63927 -16.05152 -15.78361 -15.51404 -15.25163 -15.13656 -15.07918 -14.79764 -14.71941 -14.54650 -14.09647 -14.03931 -13.85144 -13.59186 -13.48712 -13.00520 -12.94446 -12.88274 -12.77273 -12.70296 -12.56450 -12.38920 -12.28495 -12.09100 -11.97265 -11.87607 -11.75380 -11.36969 -11.30639 -11.03392 -10.91639 -10.76673 -10.03713 -9.89884 -9.66451 -8.97699 -7.99244 -5.22473 -0.34516 -0.16768 1.24861 1.30562 1.35952 1.74596 1.87059 2.46310 2.47861 2.53064 3.25480 3.33166 3.40757 3.57052 3.74909 3.82198 3.83074 3.86303 3.98647 4.13478 4.20734 4.24047 4.25931 4.27778 4.38757 4.42529 4.48353 4.59884 4.66029 4.75979 4.77547 4.83171 4.88786 4.90907 4.92689 4.98736 5.05192 5.10290 5.10726 5.16168 5.21176 5.29347 5.30666 5.42172 5.44788 5.55830 5.70217 5.77534 6.23900 6.40070 6.54962 6.79199 7.12171 7.24478 7.90943 8.08671 9.24313 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007009 B = 0.005250 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3994.139035 B = 5332.395165 C = 7804.213350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 C 0.155 3.845 4 C -0.147 4.147 5 C -0.065 4.065 6 C 0.515 3.485 7 O -0.495 6.495 8 N -0.603 5.603 9 C 0.091 3.909 10 C -0.121 4.121 11 C -0.088 4.088 12 H 0.081 0.919 13 C -0.141 4.141 14 C -0.113 4.113 15 C 0.145 3.855 16 H 0.078 0.922 17 C 0.163 3.837 18 N -0.724 5.724 19 C -0.194 4.194 20 H 0.050 0.950 21 C -0.070 4.070 22 N -0.992 5.992 23 Si 0.951 3.049 24 H -0.273 1.273 25 H -0.301 1.301 26 H -0.273 1.273 27 C -0.167 4.167 28 C 0.314 3.686 29 O -0.482 6.482 30 N -0.503 5.503 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.024 0.976 47 H 0.029 0.971 48 H 0.356 0.644 49 H 0.253 0.747 50 H 0.165 0.835 51 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.610 11.569 0.277 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.115 4.115 3 C 0.017 3.983 4 C -0.168 4.168 5 C -0.076 4.076 6 C 0.301 3.699 7 O -0.368 6.368 8 N -0.339 5.339 9 C -0.030 4.030 10 C -0.159 4.159 11 C -0.106 4.106 12 H 0.100 0.900 13 C -0.198 4.198 14 C -0.152 4.152 15 C 0.042 3.958 16 H 0.096 0.904 17 C 0.037 3.963 18 N -0.368 5.368 19 C -0.326 4.326 20 H 0.068 0.932 21 C -0.260 4.260 22 N -0.645 5.645 23 Si 0.780 3.220 24 H -0.199 1.199 25 H -0.228 1.228 26 H -0.199 1.199 27 C -0.188 4.188 28 C 0.135 3.865 29 O -0.293 6.293 30 N -0.224 5.224 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.102 0.898 46 H 0.042 0.958 47 H 0.047 0.953 48 H 0.188 0.812 49 H 0.062 0.938 50 H 0.182 0.818 51 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -27.109 10.632 -0.307 29.121 hybrid contribution 0.889 0.278 -0.288 0.975 sum -26.220 10.910 -0.595 28.406 Atomic orbital electron populations 1.21614 0.92584 1.02896 1.02116 1.20670 0.98185 0.88238 1.04392 1.21289 0.92097 0.96775 0.88122 1.22174 0.97972 0.95273 1.01336 1.20462 0.95915 0.95009 0.96220 1.18680 0.84564 0.83406 0.83265 1.91221 1.32157 1.55924 1.57507 1.47930 1.26156 1.12902 1.46874 1.22487 0.87480 0.94711 0.98370 1.22044 0.98149 1.00742 0.94996 1.21113 0.95041 0.97100 0.97357 0.90050 1.21769 1.00627 1.00892 0.96546 1.21925 0.98634 0.99384 0.95241 1.21512 0.88031 0.95204 0.91058 0.90431 1.20959 0.91077 0.95059 0.89231 1.42549 1.35603 1.50838 1.07797 1.18954 1.03559 1.14814 0.95251 0.93216 1.25268 0.98835 1.01052 1.00856 1.69868 1.24053 1.39961 1.30606 0.85452 0.77575 0.78013 0.80911 1.19897 1.22776 1.19882 1.22514 1.00239 1.02201 0.93884 1.19039 0.93378 0.87318 0.86746 1.84786 1.48227 1.58005 1.38233 1.66834 1.26926 1.04350 1.24276 0.92783 0.92450 0.90403 0.89447 0.88729 0.84166 0.89452 0.88500 0.92326 0.87913 0.92433 0.91187 0.93111 0.92219 0.89774 0.95843 0.95280 0.81173 0.93805 0.81803 0.71516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 9.77 71.98 0.70 -1.40 16 2 C -0.08 -1.50 6.33 29.85 0.19 -1.31 16 3 C 0.15 3.95 6.18 42.50 0.26 4.21 16 4 C -0.15 -4.29 9.34 22.63 0.21 -4.08 16 5 C -0.07 -1.98 5.22 -19.90 -0.10 -2.08 16 6 C 0.52 18.36 6.78 86.88 0.59 18.95 16 7 O -0.50 -23.29 10.75 -3.76 -0.04 -23.33 16 8 N -0.60 -16.66 2.97 -797.24 -2.36 -19.03 16 9 C 0.09 1.54 4.89 86.51 0.42 1.97 16 10 C -0.12 -1.59 5.38 30.81 0.17 -1.42 16 11 C -0.09 -1.26 2.68 -10.77 -0.03 -1.29 16 12 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 13 C -0.14 -1.64 9.19 71.98 0.66 -0.97 16 14 C -0.11 -2.40 4.64 30.67 0.14 -2.26 16 15 C 0.14 4.24 2.92 44.97 0.13 4.37 16 16 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 17 C 0.16 6.77 4.87 86.38 0.42 7.19 16 18 N -0.72 -37.30 3.05 -343.46 -1.05 -38.35 16 19 C -0.19 -12.13 10.19 84.03 0.86 -11.28 16 20 H 0.05 3.41 8.06 -2.91 -0.02 3.38 16 21 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 22 N -0.99 -68.40 13.97 21.65 0.30 -68.10 16 23 Si 0.95 50.96 27.74 68.60 1.90 52.87 16 24 H -0.27 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.30 -16.34 7.11 99.48 0.71 -15.63 16 26 H -0.27 -13.95 6.52 99.48 0.65 -13.30 16 27 C -0.17 -4.10 7.42 22.75 0.17 -3.93 16 28 C 0.31 7.49 7.74 84.79 0.66 8.14 16 29 O -0.48 -8.90 13.56 -90.00 -1.22 -10.12 16 30 N -0.50 -13.07 9.87 -297.17 -2.93 -16.00 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.99 7.94 -2.39 -0.02 0.97 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.09 1.63 7.86 -2.39 -0.02 1.61 16 36 H 0.14 4.19 7.94 -2.91 -0.02 4.17 16 37 H 0.09 1.20 8.10 -2.38 -0.02 1.18 16 38 H 0.10 1.52 4.63 -2.38 -0.01 1.51 16 39 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.02 0.98 8.13 -2.39 -0.02 0.97 16 47 H 0.03 1.36 6.29 -2.39 -0.01 1.35 16 48 H 0.36 17.98 4.95 -92.70 -0.46 17.52 16 49 H 0.25 16.67 8.31 -92.71 -0.77 15.90 16 50 H 0.16 3.32 6.40 -2.91 -0.02 3.30 16 51 H 0.42 2.71 9.06 -74.06 -0.67 2.04 16 Total: -1.00 -86.57 397.03 0.28 -86.29 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -0.24 Total: 25.01 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 5.92 Total: 10.77 kcal Atomic # 7 Polarization: -135.43 SS G_CDS: -6.04 Total: -141.48 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.26 Total: -33.46 kcal Atomic # 14 Polarization: 50.96 SS G_CDS: 1.90 Total: 52.87 kcal Total: -86.57 0.28 -86.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656559303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.129 kcal (2) G-P(sol) polarization free energy of solvation -86.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds