Wall clock time and date at job start Wed Apr 1 2020 04:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47060 * 2 1 4 4 C 1.38023 * 119.51357 * 125.00262 * 3 2 1 5 5 C 1.39920 * 119.13340 * 179.97438 * 4 3 2 6 6 C 1.48161 * 120.89385 * 180.02562 * 5 4 3 7 7 O 1.21508 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99958 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99840 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46993 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.49927 * 60.00187 * 10 9 8 12 12 C 1.53046 * 109.49610 * 180.02562 * 10 9 8 13 13 C 1.53040 * 109.53673 * 181.28637 * 12 10 9 14 14 C 1.53191 * 109.34145 * 298.67929 * 13 12 10 15 15 N 1.46927 * 108.77258 * 54.62100 * 14 13 12 16 16 C 1.36939 * 120.62946 * 126.41504 * 15 14 13 17 17 H 1.07999 * 120.00205 * 331.80573 * 16 15 14 18 18 C 1.38810 * 119.99639 * 151.80725 * 16 15 14 19 19 N 1.31617 * 120.00608 * 343.07465 * 18 16 15 20 20 Si 1.86805 * 119.99653 * 163.08195 * 18 16 15 21 21 H 1.48507 * 109.47169 * 89.99823 * 20 18 16 22 22 H 1.48501 * 109.47180 * 209.99496 * 20 18 16 23 23 H 1.48497 * 109.47255 * 329.99906 * 20 18 16 24 24 C 1.46928 * 118.73785 * 306.39308 * 15 14 13 25 25 C 1.39618 * 118.21701 * 359.97438 * 5 4 3 26 26 C 1.38846 * 118.94658 * 359.97438 * 25 5 4 27 27 O 1.35685 * 119.62468 * 179.97438 * 26 25 5 28 28 N 1.31873 * 119.51048 * 304.72201 * 3 2 1 29 29 H 1.09002 * 109.47071 * 60.00383 * 1 2 3 30 30 H 1.08998 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47577 * 300.00449 * 1 2 3 32 32 H 1.09000 * 109.47577 * 239.99551 * 2 1 3 33 33 H 1.09002 * 109.47071 * 119.99617 * 2 1 3 34 34 H 1.08003 * 120.43534 * 359.94744 * 4 3 2 35 35 H 0.97001 * 120.00304 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.47405 * 300.00056 * 9 8 6 37 37 H 1.09007 * 109.46862 * 60.00016 * 9 8 6 38 38 H 1.09006 * 109.46715 * 59.99610 * 11 10 9 39 39 H 1.08994 * 109.47200 * 179.97438 * 11 10 9 40 40 H 1.08992 * 109.46961 * 300.00063 * 11 10 9 41 41 H 1.08999 * 109.45758 * 301.33181 * 12 10 9 42 42 H 1.08991 * 109.46474 * 61.29693 * 12 10 9 43 43 H 1.09001 * 109.49410 * 178.71142 * 13 12 10 44 44 H 1.09002 * 109.47123 * 58.63195 * 13 12 10 45 45 H 1.08997 * 109.58484 * 294.83813 * 14 13 12 46 46 H 1.08996 * 109.70286 * 174.47372 * 14 13 12 47 47 H 0.96997 * 120.00199 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.58594 * 293.81904 * 24 15 14 49 49 H 1.09005 * 109.58405 * 173.39781 * 24 15 14 50 50 H 1.07994 * 120.52678 * 179.97438 * 25 5 4 51 51 H 0.96709 * 113.99647 * 90.00118 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3703 3.1530 0.9760 6 6 4.3120 3.6359 2.0129 7 8 4.6932 2.8817 2.8860 8 7 4.7449 4.9120 1.9884 9 6 5.6756 5.3896 3.0140 10 6 6.0060 6.8612 2.7573 11 6 4.7209 7.6899 2.8096 12 6 6.9788 7.3606 3.8281 13 6 7.2850 8.8412 3.5909 14 6 7.9467 9.0091 2.2196 15 7 7.0817 8.4009 1.1995 16 6 6.6828 9.1197 0.1043 17 1 6.5901 10.1939 0.1679 18 6 6.3975 8.4677 -1.0874 19 7 6.8162 7.2349 -1.2798 20 14 5.4193 9.3402 -2.4184 21 1 6.3494 10.0616 -3.3239 22 1 4.6443 8.3419 -3.1981 23 1 4.4867 10.3109 -1.7914 24 6 6.6533 7.0067 1.3766 25 6 2.9207 4.0035 -0.0360 26 6 2.0398 3.5082 -0.9880 27 8 1.5938 4.3228 -1.9772 28 7 1.6325 2.2512 -0.9433 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2332 1.1438 1.7501 35 1 4.4403 5.5142 1.2916 36 1 5.2170 5.2860 3.9974 37 1 6.5916 4.7999 2.9763 38 1 4.2620 7.5869 3.7930 39 1 4.9569 8.7382 2.6272 40 1 4.0284 7.3348 2.0466 41 1 6.5297 7.2356 4.8134 42 1 7.9034 6.7861 3.7752 43 1 7.9598 9.2020 4.3672 44 1 6.3575 9.4132 3.6198 45 1 8.9171 8.5127 2.2190 46 1 8.0783 10.0691 2.0023 47 1 6.6171 6.7794 -2.1128 48 1 7.5183 6.3470 1.3071 49 1 5.9295 6.7460 0.6044 50 1 3.2529 5.0302 -0.0775 51 1 2.1472 4.3179 -2.7703 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671898564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:06 Heat of formation + Delta-G solvation = -32.889785 kcal Electronic energy + Delta-G solvation = -31695.886191 eV Core-core repulsion = 27595.613203 eV Total energy + Delta-G solvation = -4100.272988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.93334 -39.56127 -38.34363 -37.33563 -34.92801 -34.18235 -33.26844 -32.37139 -31.33615 -29.96239 -29.53228 -26.75785 -26.09244 -25.39729 -24.87864 -23.50857 -22.52880 -22.10911 -20.63391 -20.17243 -18.92965 -17.97819 -17.21139 -17.00317 -16.70773 -15.80228 -15.71216 -15.40646 -15.10679 -14.92382 -14.66470 -14.23304 -14.10698 -13.97012 -13.80736 -13.56069 -13.27154 -13.18426 -12.83581 -12.42378 -12.38582 -12.25176 -12.16751 -11.92248 -11.70397 -11.62986 -11.38129 -11.26074 -11.03115 -10.91335 -10.71779 -10.47335 -10.26934 -10.24696 -10.14586 -9.98567 -9.88883 -9.68716 -9.48611 -9.45115 -8.97166 -8.85911 -8.56167 -6.73443 -5.88092 -3.30149 0.58159 0.81748 2.81745 3.17564 3.29176 3.37389 3.38741 3.40116 3.67273 4.25986 4.40921 4.52305 4.79392 4.84315 4.97251 5.02096 5.08584 5.11895 5.22097 5.30589 5.36638 5.44176 5.51519 5.53645 5.60421 5.66731 5.71136 5.82471 5.87769 5.96112 5.96605 6.02251 6.05795 6.10590 6.17697 6.27907 6.35472 6.37287 6.47479 6.52498 6.64053 6.76810 6.81142 6.90238 6.98252 7.20548 7.34831 7.47624 7.61108 7.70799 7.72907 8.22981 8.35040 9.12114 9.75419 10.33037 11.19761 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003539 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.826933 B = 7909.274576 C = 9949.255863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C 0.147 3.853 4 C -0.126 4.126 5 C -0.064 4.064 6 C 0.556 3.444 7 O -0.538 6.538 8 N -0.705 5.705 9 C 0.135 3.865 10 C -0.104 4.104 11 C -0.127 4.127 12 C -0.095 4.095 13 C -0.135 4.135 14 C 0.143 3.857 15 N -0.589 5.589 16 C -0.248 4.248 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.896 3.104 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.186 3.814 25 C -0.156 4.156 26 C 0.315 3.685 27 O -0.479 6.479 28 N -0.487 5.487 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.407 0.593 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.017 0.983 46 H 0.052 0.948 47 H 0.253 0.747 48 H 0.018 0.982 49 H 0.086 0.914 50 H 0.148 0.852 51 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 -9.488 4.842 13.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 C 0.009 3.991 4 C -0.147 4.147 5 C -0.075 4.075 6 C 0.341 3.659 7 O -0.416 6.416 8 N -0.357 5.357 9 C 0.011 3.989 10 C -0.106 4.106 11 C -0.184 4.184 12 C -0.133 4.133 13 C -0.174 4.174 14 C 0.017 3.983 15 N -0.311 5.311 16 C -0.378 4.378 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.726 3.274 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.059 3.941 25 C -0.177 4.177 26 C 0.136 3.864 27 O -0.286 6.286 28 N -0.207 5.207 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.244 0.756 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.036 0.964 49 H 0.104 0.896 50 H 0.166 0.834 51 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -8.698 -10.164 5.037 14.295 hybrid contribution 0.377 1.075 -0.968 1.495 sum -8.321 -9.089 4.068 12.977 Atomic orbital electron populations 1.21683 0.93978 1.01769 1.02800 1.20522 0.97131 0.89783 1.03553 1.20965 0.92934 0.95746 0.89431 1.22093 0.97404 0.95512 0.99699 1.20331 0.97269 0.94513 0.95350 1.18050 0.80898 0.82422 0.84504 1.90748 1.58202 1.55437 1.37207 1.46017 1.46830 1.11310 1.31543 1.21470 0.92265 0.95101 0.90019 1.21563 0.96752 0.91619 1.00664 1.21734 0.95640 1.01787 0.99248 1.21343 0.98382 0.96859 0.96723 1.22045 1.00825 0.95804 0.98747 1.20935 0.92297 0.97053 0.88049 1.43979 1.54591 1.10467 1.22017 1.19162 1.39230 0.91306 0.88095 0.91751 1.25008 1.00862 0.96934 0.96710 1.70043 1.46938 1.12546 1.25173 0.86393 0.80145 0.78906 0.81954 1.21422 1.21496 1.20460 1.20783 0.97065 0.85552 0.90650 1.22411 0.97433 1.01976 0.95925 1.18929 0.90785 0.86348 0.90303 1.84788 1.54835 1.61379 1.27637 1.66763 1.24498 1.03657 1.25821 0.91531 0.92214 0.92826 0.89677 0.89831 0.83176 0.75566 0.91886 0.91449 0.94402 0.90807 0.93813 0.93305 0.92499 0.93146 0.91932 0.96550 0.92895 0.93731 0.96372 0.89555 0.83413 0.73741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.77 37.16 0.36 -0.86 16 2 C -0.07 -0.63 6.33 -27.88 -0.18 -0.81 16 3 C 0.15 1.77 6.17 -82.65 -0.51 1.26 16 4 C -0.13 -1.61 9.27 -39.03 -0.36 -1.97 16 5 C -0.06 -0.91 5.91 -104.68 -0.62 -1.53 16 6 C 0.56 8.95 7.80 -12.19 -0.10 8.86 16 7 O -0.54 -9.86 16.44 5.36 0.09 -9.77 16 8 N -0.71 -11.11 4.95 -61.15 -0.30 -11.41 16 9 C 0.14 2.15 4.57 -4.04 -0.02 2.13 16 10 C -0.10 -1.75 0.53 -154.39 -0.08 -1.83 16 11 C -0.13 -2.08 7.81 37.16 0.29 -1.79 16 12 C -0.09 -1.48 4.71 -26.69 -0.13 -1.61 16 13 C -0.14 -2.18 5.74 -26.61 -0.15 -2.33 16 14 C 0.14 2.82 6.52 -3.71 -0.02 2.79 16 15 N -0.59 -13.51 2.43 -172.32 -0.42 -13.93 16 16 C -0.25 -6.32 9.58 -15.06 -0.14 -6.46 16 17 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 18 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 19 N -0.90 -24.13 11.20 55.49 0.62 -23.51 16 20 Si 0.90 20.35 29.59 -169.99 -5.03 15.32 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 C 0.19 3.96 3.72 -3.71 -0.01 3.95 16 25 C -0.16 -2.16 9.55 -38.84 -0.37 -2.53 16 26 C 0.32 4.36 7.74 -17.16 -0.13 4.23 16 27 O -0.48 -6.11 13.56 -18.76 -0.25 -6.37 16 28 N -0.49 -6.62 9.88 -9.60 -0.09 -6.72 16 29 H 0.07 0.65 7.95 -51.93 -0.41 0.24 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 34 H 0.15 1.74 7.62 -52.48 -0.40 1.34 16 35 H 0.41 6.38 4.36 -40.82 -0.18 6.20 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 1.34 5.97 -51.93 -0.31 1.03 16 40 H 0.04 0.71 6.86 -51.93 -0.36 0.36 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 47 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.09 2.00 4.97 -51.93 -0.26 1.74 16 50 H 0.15 2.00 6.53 -52.49 -0.34 1.66 16 51 H 0.40 3.42 9.06 45.56 0.41 3.83 16 LS Contribution 401.21 15.07 6.05 6.05 Total: -1.00 -30.41 401.21 -8.80 -39.21 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -7.19 Total: 9.63 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.26 Total: 1.50 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.20 Total: -55.57 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.17 Total: -16.14 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.41 -8.80 -39.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671898564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.321 kcal (2) G-P(sol) polarization free energy of solvation -30.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds