Wall clock time and date at job start Wed Apr 1 2020 04:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47060 * 2 1 4 4 C 1.38023 * 119.51357 * 125.00262 * 3 2 1 5 5 C 1.39920 * 119.13340 * 179.97438 * 4 3 2 6 6 C 1.48161 * 120.89385 * 180.02562 * 5 4 3 7 7 O 1.21508 * 120.00072 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99958 * 180.02562 * 6 5 4 9 9 C 1.46503 * 119.99840 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46993 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.49927 * 60.00187 * 10 9 8 12 12 C 1.53046 * 109.49610 * 180.02562 * 10 9 8 13 13 C 1.53040 * 109.53673 * 181.28637 * 12 10 9 14 14 C 1.53191 * 109.34145 * 298.67929 * 13 12 10 15 15 N 1.46927 * 108.77258 * 54.62100 * 14 13 12 16 16 C 1.36939 * 120.62946 * 126.41504 * 15 14 13 17 17 H 1.07999 * 120.00205 * 331.80573 * 16 15 14 18 18 C 1.38810 * 119.99639 * 151.80725 * 16 15 14 19 19 N 1.31617 * 120.00608 * 343.07465 * 18 16 15 20 20 Si 1.86805 * 119.99653 * 163.08195 * 18 16 15 21 21 H 1.48507 * 109.47169 * 89.99823 * 20 18 16 22 22 H 1.48501 * 109.47180 * 209.99496 * 20 18 16 23 23 H 1.48497 * 109.47255 * 329.99906 * 20 18 16 24 24 C 1.46928 * 118.73785 * 306.39308 * 15 14 13 25 25 C 1.39618 * 118.21701 * 359.97438 * 5 4 3 26 26 C 1.38846 * 118.94658 * 359.97438 * 25 5 4 27 27 O 1.35685 * 119.62468 * 179.97438 * 26 25 5 28 28 N 1.31873 * 119.51048 * 304.72201 * 3 2 1 29 29 H 1.09002 * 109.47071 * 60.00383 * 1 2 3 30 30 H 1.08998 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47577 * 300.00449 * 1 2 3 32 32 H 1.09000 * 109.47577 * 239.99551 * 2 1 3 33 33 H 1.09002 * 109.47071 * 119.99617 * 2 1 3 34 34 H 1.08003 * 120.43534 * 359.94744 * 4 3 2 35 35 H 0.97001 * 120.00304 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.47405 * 300.00056 * 9 8 6 37 37 H 1.09007 * 109.46862 * 60.00016 * 9 8 6 38 38 H 1.09006 * 109.46715 * 59.99610 * 11 10 9 39 39 H 1.08994 * 109.47200 * 179.97438 * 11 10 9 40 40 H 1.08992 * 109.46961 * 300.00063 * 11 10 9 41 41 H 1.08999 * 109.45758 * 301.33181 * 12 10 9 42 42 H 1.08991 * 109.46474 * 61.29693 * 12 10 9 43 43 H 1.09001 * 109.49410 * 178.71142 * 13 12 10 44 44 H 1.09002 * 109.47123 * 58.63195 * 13 12 10 45 45 H 1.08997 * 109.58484 * 294.83813 * 14 13 12 46 46 H 1.08996 * 109.70286 * 174.47372 * 14 13 12 47 47 H 0.96997 * 120.00199 * 180.02562 * 19 18 16 48 48 H 1.09003 * 109.58594 * 293.81904 * 24 15 14 49 49 H 1.09005 * 109.58405 * 173.39781 * 24 15 14 50 50 H 1.07994 * 120.52678 * 179.97438 * 25 5 4 51 51 H 0.96709 * 113.99647 * 90.00118 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9085 1.8322 0.9839 5 6 3.3703 3.1530 0.9760 6 6 4.3120 3.6359 2.0129 7 8 4.6932 2.8817 2.8860 8 7 4.7449 4.9120 1.9884 9 6 5.6756 5.3896 3.0140 10 6 6.0060 6.8612 2.7573 11 6 4.7209 7.6899 2.8096 12 6 6.9788 7.3606 3.8281 13 6 7.2850 8.8412 3.5909 14 6 7.9467 9.0091 2.2196 15 7 7.0817 8.4009 1.1995 16 6 6.6828 9.1197 0.1043 17 1 6.5901 10.1939 0.1679 18 6 6.3975 8.4677 -1.0874 19 7 6.8162 7.2349 -1.2798 20 14 5.4193 9.3402 -2.4184 21 1 6.3494 10.0616 -3.3239 22 1 4.6443 8.3419 -3.1981 23 1 4.4867 10.3109 -1.7914 24 6 6.6533 7.0067 1.3766 25 6 2.9207 4.0035 -0.0360 26 6 2.0398 3.5082 -0.9880 27 8 1.5938 4.3228 -1.9772 28 7 1.6325 2.2512 -0.9433 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2332 1.1438 1.7501 35 1 4.4403 5.5142 1.2916 36 1 5.2170 5.2860 3.9974 37 1 6.5916 4.7999 2.9763 38 1 4.2620 7.5869 3.7930 39 1 4.9569 8.7382 2.6272 40 1 4.0284 7.3348 2.0466 41 1 6.5297 7.2356 4.8134 42 1 7.9034 6.7861 3.7752 43 1 7.9598 9.2020 4.3672 44 1 6.3575 9.4132 3.6198 45 1 8.9171 8.5127 2.2190 46 1 8.0783 10.0691 2.0023 47 1 6.6171 6.7794 -2.1128 48 1 7.5183 6.3470 1.3071 49 1 5.9295 6.7460 0.6044 50 1 3.2529 5.0302 -0.0775 51 1 2.1472 4.3179 -2.7703 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671898564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:05 Heat of formation + Delta-G solvation = -53.553982 kcal Electronic energy + Delta-G solvation = -31696.782258 eV Core-core repulsion = 27595.613203 eV Total energy + Delta-G solvation = -4101.169055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.01530 -40.84498 -39.75579 -38.32660 -36.41146 -35.24076 -34.76512 -33.44727 -32.80259 -31.61584 -30.47738 -28.08406 -27.57752 -27.09416 -25.89537 -24.60116 -23.89263 -23.32580 -22.08397 -21.34701 -20.06894 -19.41693 -18.53184 -18.29719 -18.08792 -16.99500 -16.82578 -16.77201 -16.40142 -16.28655 -15.84290 -15.57494 -15.40968 -15.17019 -14.98922 -14.94782 -14.78381 -14.36354 -14.18756 -13.83093 -13.75202 -13.39838 -13.13823 -13.02442 -13.00646 -12.84519 -12.72733 -12.57365 -12.37370 -12.30050 -12.14504 -11.95275 -11.85642 -11.73963 -11.54287 -11.40943 -11.13723 -11.07564 -10.97702 -10.57897 -10.50823 -10.16026 -9.96039 -8.60655 -7.83321 -5.27806 -0.51506 -0.18841 1.46651 1.50678 1.58223 1.64825 1.96266 2.38049 2.53229 2.62655 3.29050 3.30641 3.42146 3.61373 3.79530 3.81812 3.93672 4.02048 4.03609 4.12219 4.21929 4.35955 4.37772 4.42160 4.51642 4.53870 4.64623 4.71958 4.73320 4.77049 4.80294 4.89190 4.99348 5.03524 5.06209 5.10852 5.18011 5.18498 5.22425 5.29707 5.31060 5.39261 5.44863 5.45635 5.49318 5.63174 5.72475 5.77839 6.31440 6.42784 6.46499 6.74466 6.94787 7.19471 7.90073 8.42711 9.21904 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010880 B = 0.003539 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.826933 B = 7909.274576 C = 9949.255863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.072 4.072 3 C 0.150 3.850 4 C -0.126 4.126 5 C -0.075 4.075 6 C 0.557 3.443 7 O -0.562 6.562 8 N -0.705 5.705 9 C 0.140 3.860 10 C -0.092 4.092 11 C -0.120 4.120 12 C -0.094 4.094 13 C -0.124 4.124 14 C 0.136 3.864 15 N -0.604 5.604 16 C -0.256 4.256 17 H 0.062 0.938 18 C -0.040 4.040 19 N -0.929 5.929 20 Si 0.953 3.047 21 H -0.293 1.293 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.197 3.803 25 C -0.163 4.163 26 C 0.309 3.691 27 O -0.488 6.488 28 N -0.498 5.498 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.163 0.837 35 H 0.406 0.594 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.037 0.963 41 H 0.080 0.920 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.007 0.993 46 H 0.050 0.950 47 H 0.249 0.751 48 H -0.017 1.017 49 H 0.064 0.936 50 H 0.145 0.855 51 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.126 -10.028 6.157 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C 0.012 3.988 4 C -0.146 4.146 5 C -0.086 4.086 6 C 0.344 3.656 7 O -0.442 6.442 8 N -0.356 5.356 9 C 0.016 3.984 10 C -0.094 4.094 11 C -0.178 4.178 12 C -0.132 4.132 13 C -0.162 4.162 14 C 0.011 3.989 15 N -0.327 5.327 16 C -0.386 4.386 17 H 0.079 0.921 18 C -0.236 4.236 19 N -0.575 5.575 20 Si 0.782 3.218 21 H -0.220 1.220 22 H -0.213 1.213 23 H -0.199 1.199 24 C 0.071 3.929 25 C -0.185 4.185 26 C 0.131 3.869 27 O -0.298 6.298 28 N -0.218 5.218 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.181 0.819 35 H 0.244 0.756 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.001 0.999 49 H 0.082 0.918 50 H 0.162 0.838 51 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -9.846 -10.678 6.356 15.855 hybrid contribution 0.795 1.250 -1.403 2.041 sum -9.051 -9.428 4.953 13.976 Atomic orbital electron populations 1.21661 0.93647 1.02922 1.01693 1.20689 0.97301 0.87733 1.05220 1.21535 0.91976 0.96953 0.88358 1.22297 0.97206 0.94983 1.00129 1.20269 0.97608 0.95431 0.95269 1.18274 0.80752 0.82111 0.84481 1.90724 1.59275 1.55908 1.38279 1.46040 1.46627 1.11421 1.31489 1.21419 0.92085 0.94069 0.90806 1.21364 0.97136 0.92604 0.98282 1.21658 0.95146 1.00354 1.00603 1.21374 0.98037 0.96267 0.97569 1.21921 1.01112 0.96336 0.96867 1.21103 0.91885 0.96500 0.89460 1.44218 1.55400 1.10859 1.22193 1.19406 1.38717 0.91492 0.89013 0.92072 1.25594 1.01951 0.97588 0.98456 1.70178 1.48168 1.13704 1.25429 0.85512 0.78806 0.77921 0.79607 1.21981 1.21332 1.19868 1.20555 0.95287 0.84174 0.92885 1.22366 0.97973 1.01886 0.96230 1.19019 0.90745 0.86652 0.90519 1.84739 1.55445 1.61338 1.28301 1.66871 1.24801 1.03674 1.26471 0.93176 0.89951 0.93368 0.88573 0.87544 0.81912 0.75596 0.90140 0.92523 0.91717 0.92464 0.94382 0.90145 0.92847 0.90201 0.91776 0.97482 0.93138 0.94182 0.99905 0.91752 0.83767 0.71843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.77 71.98 0.70 -1.41 16 2 C -0.07 -1.09 6.33 29.85 0.19 -0.90 16 3 C 0.15 3.41 6.17 42.50 0.26 3.67 16 4 C -0.13 -3.08 9.27 22.63 0.21 -2.87 16 5 C -0.08 -2.14 5.91 -19.90 -0.12 -2.26 16 6 C 0.56 17.91 7.80 86.88 0.68 18.59 16 7 O -0.56 -20.34 16.44 -3.74 -0.06 -20.40 16 8 N -0.70 -22.28 4.95 -465.67 -2.31 -24.58 16 9 C 0.14 4.34 4.57 86.38 0.39 4.73 16 10 C -0.09 -3.02 0.53 -52.10 -0.03 -3.05 16 11 C -0.12 -3.77 7.81 71.98 0.56 -3.20 16 12 C -0.09 -2.73 4.71 30.62 0.14 -2.59 16 13 C -0.12 -3.71 5.74 30.67 0.18 -3.53 16 14 C 0.14 5.32 6.52 86.36 0.56 5.88 16 15 N -0.60 -28.14 2.43 -699.10 -1.70 -29.85 16 16 C -0.26 -13.22 9.58 84.03 0.81 -12.42 16 17 H 0.06 3.14 7.88 -2.91 -0.02 3.11 16 18 C -0.04 -2.10 4.92 84.86 0.42 -1.68 16 19 N -0.93 -51.08 11.20 21.65 0.24 -50.84 16 20 Si 0.95 42.37 29.59 68.60 2.03 44.40 16 21 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 24 C 0.20 8.60 3.72 86.36 0.32 8.93 16 25 C -0.16 -4.57 9.55 22.75 0.22 -4.35 16 26 C 0.31 8.51 7.74 84.78 0.66 9.17 16 27 O -0.49 -12.37 13.56 -90.03 -1.22 -13.59 16 28 N -0.50 -13.18 9.88 -297.16 -2.94 -16.12 16 29 H 0.05 0.91 7.95 -2.39 -0.02 0.89 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.11 1.16 7.86 -2.39 -0.02 1.14 16 34 H 0.16 3.52 7.62 -2.91 -0.02 3.50 16 35 H 0.41 13.04 4.36 -92.71 -0.40 12.64 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.06 2.00 5.97 -2.39 -0.01 1.98 16 40 H 0.04 1.21 6.86 -2.39 -0.02 1.20 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.06 1.94 6.33 -2.39 -0.02 1.92 16 45 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 46 H 0.05 1.96 7.93 -2.39 -0.02 1.94 16 47 H 0.25 13.33 8.31 -92.71 -0.77 12.56 16 48 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 49 H 0.06 3.09 4.97 -2.38 -0.01 3.08 16 50 H 0.14 4.06 6.53 -2.91 -0.02 4.04 16 51 H 0.42 7.03 9.06 -74.05 -0.67 6.36 16 Total: -1.00 -66.01 401.21 0.08 -65.93 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.12 Total: 32.32 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.15 Total: 12.72 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -6.70 Total: -121.38 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -1.28 Total: -33.99 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -66.01 0.08 -65.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671898564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.372 kcal (2) G-P(sol) polarization free energy of solvation -66.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds