Wall clock time and date at job start Wed Apr 1 2020 05:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47274 * 2 1 4 4 N 1.46500 * 109.44818 * 305.18400 * 3 2 1 5 5 C 1.36927 * 120.00153 * 296.07398 * 4 3 2 6 6 H 1.08002 * 120.00582 * 5.51395 * 5 4 3 7 7 C 1.38812 * 120.00179 * 185.52086 * 5 4 3 8 8 N 1.31619 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00226 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46942 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47381 * 119.99651 * 9 7 5 12 12 H 1.48502 * 109.46930 * 239.99845 * 9 7 5 13 13 C 1.53036 * 109.46027 * 185.21862 * 3 2 1 14 14 C 1.53189 * 109.31378 * 178.61132 * 13 3 2 15 15 N 1.46931 * 108.77613 * 54.63861 * 14 13 3 16 16 C 1.34777 * 120.63443 * 126.36468 * 15 14 13 17 17 O 1.21584 * 119.99569 * 0.02562 * 16 15 14 18 18 C 1.47516 * 119.99875 * 180.02562 * 16 15 14 19 19 C 1.39987 * 120.59968 * 90.25058 * 18 16 15 20 20 C 1.50704 * 120.82349 * 359.97438 * 19 18 16 21 21 C 1.38338 * 118.35162 * 180.28048 * 19 18 16 22 22 C 1.38352 * 119.45490 * 359.73628 * 21 19 18 23 23 C 1.50706 * 119.40690 * 180.02562 * 22 21 19 24 24 N 1.31883 * 121.18928 * 359.97438 * 22 21 19 25 25 C 1.32232 * 121.80039 * 0.02562 * 24 22 21 26 26 O 1.35423 * 119.80132 * 179.97438 * 25 24 22 27 27 C 1.46933 * 118.73532 * 306.64399 * 15 14 13 28 28 C 1.52766 * 109.00815 * 53.30795 * 27 15 14 29 29 H 1.09003 * 109.47005 * 54.16223 * 1 2 3 30 30 H 1.08999 * 109.47097 * 174.15940 * 1 2 3 31 31 H 1.08997 * 109.47208 * 294.16276 * 1 2 3 32 32 H 1.09001 * 109.47279 * 239.99535 * 2 1 3 33 33 H 1.09009 * 109.46536 * 119.99836 * 2 1 3 34 34 H 0.97002 * 119.99999 * 116.07109 * 4 3 2 35 35 H 0.96998 * 120.00307 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.49698 * 58.65963 * 13 3 2 37 37 H 1.08998 * 109.50251 * 298.56448 * 13 3 2 38 38 H 1.08999 * 109.58739 * 294.85025 * 14 13 3 39 39 H 1.09005 * 109.58846 * 174.42183 * 14 13 3 40 40 H 1.08996 * 109.47081 * 270.29454 * 20 19 18 41 41 H 1.08999 * 109.47015 * 30.29915 * 20 19 18 42 42 H 1.09000 * 109.46994 * 150.29991 * 20 19 18 43 43 H 1.08000 * 120.27124 * 179.75237 * 21 19 18 44 44 H 1.08995 * 109.46780 * 269.97783 * 23 22 21 45 45 H 1.09003 * 109.47055 * 29.97377 * 23 22 21 46 46 H 1.08998 * 109.47483 * 149.96993 * 23 22 21 47 47 H 0.96705 * 114.00236 * 90.00321 * 26 25 24 48 48 H 1.08995 * 109.58618 * 173.14063 * 27 15 14 49 49 H 1.09002 * 109.58724 * 293.56752 * 27 15 14 50 50 H 1.09000 * 109.56342 * 185.55309 * 28 27 15 51 51 H 1.08998 * 109.35954 * 65.49913 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4522 2.1677 -1.1290 5 6 1.7401 1.7864 -2.4122 6 1 2.3276 0.8983 -2.5929 7 6 1.2770 2.5413 -3.4811 8 7 0.5607 3.6234 -3.2612 9 14 1.6691 2.0208 -5.2317 10 1 2.4826 0.7787 -5.2083 11 1 0.4046 1.7709 -5.9690 12 1 2.4325 3.0992 -5.9096 13 6 3.5648 1.4441 -0.1312 14 6 4.0687 2.8903 -0.1658 15 7 3.5645 3.5953 1.0206 16 6 4.4105 4.2439 1.8453 17 8 5.6034 4.2497 1.6103 18 6 3.8891 4.9467 3.0328 19 6 3.7756 4.2837 4.2605 20 6 4.1818 2.8390 4.3984 21 6 3.2752 4.9857 5.3425 22 6 2.9102 6.3108 5.1838 23 6 2.3658 7.0747 6.3633 24 7 3.0310 6.9177 4.0192 25 6 3.5033 6.2932 2.9536 26 8 3.6096 6.9556 1.7773 27 6 2.1210 3.5746 1.2943 28 6 1.6383 2.1253 1.3094 29 1 -0.3633 0.6017 -0.8331 30 1 -0.3633 -1.0223 -0.1046 31 1 -0.3633 0.4206 0.9376 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 0.8590 2.9180 -0.9676 35 1 0.2367 4.1507 -4.0081 36 1 3.8512 0.9369 -1.0526 37 1 4.0039 0.9261 0.7213 38 1 3.7032 3.3832 -1.0666 39 1 5.1587 2.8977 -0.1594 40 1 3.3269 2.1989 4.1807 41 1 4.9876 2.6198 3.6979 42 1 4.5246 2.6536 5.4163 43 1 3.1706 4.5035 6.3031 44 1 1.2817 6.9667 6.3970 45 1 2.7989 6.6806 7.2827 46 1 2.6230 8.1291 6.2634 47 1 4.4595 7.3994 1.6512 48 1 1.9263 4.0332 2.2637 49 1 1.5934 4.1244 0.5150 50 1 0.5535 2.1030 1.4135 51 1 2.0956 1.6008 2.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673606054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:39 Heat of formation + Delta-G solvation = -32.825478 kcal Electronic energy + Delta-G solvation = -32763.992327 eV Core-core repulsion = 28663.722127 eV Total energy + Delta-G solvation = -4100.270200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.14026 -39.58340 -37.93993 -37.41278 -34.77397 -34.32834 -32.59801 -31.98768 -30.88501 -30.12476 -29.23202 -28.33272 -27.71739 -25.05394 -23.88342 -23.36643 -22.83634 -22.04336 -21.14890 -19.66688 -18.51108 -18.29223 -17.40174 -17.08774 -17.04371 -16.08705 -15.62774 -14.90751 -14.64523 -14.43967 -14.40585 -14.07150 -13.84960 -13.79333 -13.57634 -13.46673 -13.26067 -13.17914 -13.01699 -12.64651 -12.60928 -12.38157 -12.19406 -12.03407 -11.94567 -11.73037 -11.69468 -11.27787 -11.15038 -10.89195 -10.75992 -10.61703 -10.37670 -10.21143 -10.14247 -9.94884 -9.73566 -9.64903 -9.47524 -9.34099 -8.92271 -8.88949 -8.21124 -6.94247 -5.77226 -3.05814 0.64955 0.93387 2.69335 3.15343 3.26035 3.42402 3.48765 3.50852 3.59154 4.26570 4.32919 4.54370 4.58652 4.80512 4.99220 5.09110 5.12538 5.16703 5.28104 5.30596 5.35300 5.37668 5.41557 5.56193 5.58444 5.62298 5.67856 5.75165 5.80480 5.85971 5.93453 5.95018 5.96932 6.06451 6.14332 6.18099 6.26621 6.30990 6.40315 6.50291 6.60674 6.66812 6.79086 6.87716 6.92516 7.07289 7.15659 7.35184 7.68746 7.72962 7.74381 8.32768 8.40930 9.52770 10.08628 10.44319 11.44919 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.003446 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.290054 B = 8124.445172 C = 8684.593348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 C 0.203 3.797 4 N -0.712 5.712 5 C -0.230 4.230 6 H 0.070 0.930 7 C -0.010 4.010 8 N -0.929 5.929 9 Si 0.899 3.101 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.293 1.293 13 C -0.131 4.131 14 C 0.121 3.879 15 N -0.580 5.580 16 C 0.572 3.428 17 O -0.548 6.548 18 C -0.190 4.190 19 C 0.008 3.992 20 C -0.124 4.124 21 C -0.188 4.188 22 C 0.163 3.837 23 C -0.105 4.105 24 N -0.506 5.506 25 C 0.354 3.646 26 O -0.471 6.471 27 C 0.115 3.885 28 C -0.130 4.130 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.383 0.617 35 H 0.253 0.747 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.143 0.857 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.405 0.595 48 H 0.066 0.934 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 0.778 20.230 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.111 3.889 4 N -0.354 5.354 5 C -0.361 4.361 6 H 0.088 0.912 7 C -0.206 4.206 8 N -0.578 5.578 9 Si 0.731 3.269 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.220 1.220 13 C -0.172 4.172 14 C -0.001 4.001 15 N -0.311 5.311 16 C 0.357 3.643 17 O -0.428 6.428 18 C -0.196 4.196 19 C 0.000 4.000 20 C -0.180 4.180 21 C -0.208 4.208 22 C 0.025 3.975 23 C -0.163 4.163 24 N -0.226 5.226 25 C 0.174 3.826 26 O -0.279 6.279 27 C -0.008 4.008 28 C -0.168 4.168 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.218 0.782 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.160 0.840 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.264 0.736 48 H 0.084 0.916 49 H 0.101 0.899 50 H 0.095 0.905 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.044 1.377 19.663 20.122 hybrid contribution 0.538 -0.615 -1.051 1.331 sum 4.582 0.762 18.612 19.183 Atomic orbital electron populations 1.21667 0.96119 1.00118 1.01956 1.21920 0.96353 0.98166 0.99934 1.19537 0.90884 0.91125 0.87347 1.42449 1.55460 1.37089 1.00393 1.19107 1.27731 1.06391 0.82898 0.91236 1.24687 1.01058 0.97324 0.97532 1.69655 1.40687 1.17382 1.30043 0.86241 0.77395 0.77531 0.85758 1.20677 1.22106 1.22031 1.22271 0.98141 0.95502 1.01243 1.21654 0.98730 0.92612 0.87074 1.48030 1.07404 1.50418 1.25206 1.17752 0.85878 0.78684 0.81937 1.90771 1.15223 1.62467 1.74306 1.20911 1.06721 0.96139 0.95849 1.20245 0.92314 0.96549 0.90874 1.20939 1.02754 0.90650 1.03672 1.21742 1.03988 0.95108 0.99937 1.21142 0.93005 0.91309 0.92056 1.20780 1.01558 1.00677 0.93252 1.67044 1.16489 1.40123 0.98940 1.19026 0.91625 0.86962 0.84963 1.84749 1.41699 1.70417 1.30992 1.21594 0.80190 0.97822 1.01160 1.22054 1.01398 0.95031 0.98358 0.90438 0.94773 0.94310 0.92237 0.94182 0.78215 0.93655 0.90523 0.93517 0.89007 0.90530 0.89652 0.90441 0.90309 0.83955 0.89917 0.90344 0.90207 0.73601 0.91595 0.89894 0.90475 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.41 37.16 0.35 -1.99 16 2 C -0.12 -2.07 4.78 -26.73 -0.13 -2.20 16 3 C 0.20 3.56 0.44 -131.78 -0.06 3.50 16 4 N -0.71 -15.60 2.99 -47.20 -0.14 -15.74 16 5 C -0.23 -5.74 8.59 -15.06 -0.13 -5.87 16 6 H 0.07 1.73 6.78 -52.49 -0.36 1.37 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 8 N -0.93 -26.66 13.07 55.49 0.73 -25.93 16 9 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 C -0.13 -2.28 4.64 -26.61 -0.12 -2.40 16 14 C 0.12 2.22 6.18 -3.71 -0.02 2.20 16 15 N -0.58 -9.87 2.98 -174.26 -0.52 -10.39 16 16 C 0.57 9.71 5.31 -12.48 -0.07 9.65 16 17 O -0.55 -10.78 16.52 5.29 0.09 -10.69 16 18 C -0.19 -2.77 3.66 -104.69 -0.38 -3.15 16 19 C 0.01 0.10 5.81 -103.93 -0.60 -0.51 16 20 C -0.12 -1.21 9.68 36.01 0.35 -0.86 16 21 C -0.19 -1.82 9.41 -39.50 -0.37 -2.19 16 22 C 0.16 1.75 6.78 -82.53 -0.56 1.19 16 23 C -0.11 -0.74 10.16 36.01 0.37 -0.37 16 24 N -0.51 -6.97 10.28 -9.21 -0.09 -7.06 16 25 C 0.35 5.25 7.77 -16.61 -0.13 5.12 16 26 O -0.47 -7.03 13.01 -17.96 -0.23 -7.26 16 27 C 0.12 1.86 6.04 -3.93 -0.02 1.83 16 28 C -0.13 -1.96 4.72 -26.83 -0.13 -2.09 16 29 H 0.08 1.54 7.26 -51.93 -0.38 1.17 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.57 6.83 -51.93 -0.35 0.22 16 32 H 0.06 1.08 7.56 -51.93 -0.39 0.69 16 33 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 34 H 0.38 9.20 6.61 -40.82 -0.27 8.93 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.08 1.41 7.22 -51.93 -0.37 1.04 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.99 7.62 -51.93 -0.40 1.59 16 39 H 0.08 1.42 7.00 -51.93 -0.36 1.05 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.92 7.20 -51.93 -0.37 0.54 16 42 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.36 8.07 -51.93 -0.42 -0.06 16 46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.41 4.29 9.06 45.56 0.41 4.71 16 48 H 0.07 0.98 6.23 -51.93 -0.32 0.66 16 49 H 0.08 1.56 7.02 -51.93 -0.36 1.20 16 50 H 0.08 1.14 6.64 -51.93 -0.34 0.80 16 51 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -31.64 401.17 -8.15 -39.79 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -7.24 Total: 13.01 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.76 Total: 1.50 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.03 Total: -59.12 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.15 Total: -17.95 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.64 -8.15 -39.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673606054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.961 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds