Wall clock time and date at job start Wed Apr 1 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47274 * 2 1 4 4 N 1.46500 * 109.44818 * 305.18400 * 3 2 1 5 5 C 1.36927 * 120.00153 * 296.07398 * 4 3 2 6 6 H 1.08002 * 120.00582 * 5.51395 * 5 4 3 7 7 C 1.38812 * 120.00179 * 185.52086 * 5 4 3 8 8 N 1.31619 * 120.00154 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00226 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46942 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47381 * 119.99651 * 9 7 5 12 12 H 1.48502 * 109.46930 * 239.99845 * 9 7 5 13 13 C 1.53036 * 109.46027 * 185.21862 * 3 2 1 14 14 C 1.53189 * 109.31378 * 178.61132 * 13 3 2 15 15 N 1.46931 * 108.77613 * 54.63861 * 14 13 3 16 16 C 1.34777 * 120.63443 * 126.36468 * 15 14 13 17 17 O 1.21584 * 119.99569 * 0.02562 * 16 15 14 18 18 C 1.47516 * 119.99875 * 180.02562 * 16 15 14 19 19 C 1.39987 * 120.59968 * 90.25058 * 18 16 15 20 20 C 1.50704 * 120.82349 * 359.97438 * 19 18 16 21 21 C 1.38338 * 118.35162 * 180.28048 * 19 18 16 22 22 C 1.38352 * 119.45490 * 359.73628 * 21 19 18 23 23 C 1.50706 * 119.40690 * 180.02562 * 22 21 19 24 24 N 1.31883 * 121.18928 * 359.97438 * 22 21 19 25 25 C 1.32232 * 121.80039 * 0.02562 * 24 22 21 26 26 O 1.35423 * 119.80132 * 179.97438 * 25 24 22 27 27 C 1.46933 * 118.73532 * 306.64399 * 15 14 13 28 28 C 1.52766 * 109.00815 * 53.30795 * 27 15 14 29 29 H 1.09003 * 109.47005 * 54.16223 * 1 2 3 30 30 H 1.08999 * 109.47097 * 174.15940 * 1 2 3 31 31 H 1.08997 * 109.47208 * 294.16276 * 1 2 3 32 32 H 1.09001 * 109.47279 * 239.99535 * 2 1 3 33 33 H 1.09009 * 109.46536 * 119.99836 * 2 1 3 34 34 H 0.97002 * 119.99999 * 116.07109 * 4 3 2 35 35 H 0.96998 * 120.00307 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.49698 * 58.65963 * 13 3 2 37 37 H 1.08998 * 109.50251 * 298.56448 * 13 3 2 38 38 H 1.08999 * 109.58739 * 294.85025 * 14 13 3 39 39 H 1.09005 * 109.58846 * 174.42183 * 14 13 3 40 40 H 1.08996 * 109.47081 * 270.29454 * 20 19 18 41 41 H 1.08999 * 109.47015 * 30.29915 * 20 19 18 42 42 H 1.09000 * 109.46994 * 150.29991 * 20 19 18 43 43 H 1.08000 * 120.27124 * 179.75237 * 21 19 18 44 44 H 1.08995 * 109.46780 * 269.97783 * 23 22 21 45 45 H 1.09003 * 109.47055 * 29.97377 * 23 22 21 46 46 H 1.08998 * 109.47483 * 149.96993 * 23 22 21 47 47 H 0.96705 * 114.00236 * 90.00321 * 26 25 24 48 48 H 1.08995 * 109.58618 * 173.14063 * 27 15 14 49 49 H 1.09002 * 109.58724 * 293.56752 * 27 15 14 50 50 H 1.09000 * 109.56342 * 185.55309 * 28 27 15 51 51 H 1.08998 * 109.35954 * 65.49913 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4522 2.1677 -1.1290 5 6 1.7401 1.7864 -2.4122 6 1 2.3276 0.8983 -2.5929 7 6 1.2770 2.5413 -3.4811 8 7 0.5607 3.6234 -3.2612 9 14 1.6691 2.0208 -5.2317 10 1 2.4826 0.7787 -5.2083 11 1 0.4046 1.7709 -5.9690 12 1 2.4325 3.0992 -5.9096 13 6 3.5648 1.4441 -0.1312 14 6 4.0687 2.8903 -0.1658 15 7 3.5645 3.5953 1.0206 16 6 4.4105 4.2439 1.8453 17 8 5.6034 4.2497 1.6103 18 6 3.8891 4.9467 3.0328 19 6 3.7756 4.2837 4.2605 20 6 4.1818 2.8390 4.3984 21 6 3.2752 4.9857 5.3425 22 6 2.9102 6.3108 5.1838 23 6 2.3658 7.0747 6.3633 24 7 3.0310 6.9177 4.0192 25 6 3.5033 6.2932 2.9536 26 8 3.6096 6.9556 1.7773 27 6 2.1210 3.5746 1.2943 28 6 1.6383 2.1253 1.3094 29 1 -0.3633 0.6017 -0.8331 30 1 -0.3633 -1.0223 -0.1046 31 1 -0.3633 0.4206 0.9376 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 0.8590 2.9180 -0.9676 35 1 0.2367 4.1507 -4.0081 36 1 3.8512 0.9369 -1.0526 37 1 4.0039 0.9261 0.7213 38 1 3.7032 3.3832 -1.0666 39 1 5.1587 2.8977 -0.1594 40 1 3.3269 2.1989 4.1807 41 1 4.9876 2.6198 3.6979 42 1 4.5246 2.6536 5.4163 43 1 3.1706 4.5035 6.3031 44 1 1.2817 6.9667 6.3970 45 1 2.7989 6.6806 7.2827 46 1 2.6230 8.1291 6.2634 47 1 4.4595 7.3994 1.6512 48 1 1.9263 4.0332 2.2637 49 1 1.5934 4.1244 0.5150 50 1 0.5535 2.1030 1.4135 51 1 2.0956 1.6008 2.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673606054.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:38 Heat of formation + Delta-G solvation = -55.788687 kcal Electronic energy + Delta-G solvation = -32764.988086 eV Core-core repulsion = 28663.722127 eV Total energy + Delta-G solvation = -4101.265959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.21134 -40.85618 -39.35200 -38.44884 -36.26509 -35.24884 -34.43926 -32.90431 -32.22790 -31.54480 -30.89524 -29.34510 -28.44485 -26.47707 -25.65927 -24.43970 -24.26332 -23.12700 -22.25540 -20.98503 -19.74765 -19.53540 -18.93210 -18.56446 -18.22818 -17.37842 -16.70166 -16.50254 -16.02200 -15.73624 -15.50227 -15.41524 -15.37726 -15.10928 -14.68418 -14.60920 -14.32731 -14.24590 -13.98693 -13.93072 -13.87661 -13.44212 -13.23016 -13.09705 -12.96664 -12.89271 -12.88770 -12.82229 -12.61715 -12.57036 -12.29987 -12.14036 -12.09039 -11.82331 -11.54393 -11.41792 -11.29449 -10.95900 -10.81170 -10.60214 -10.42893 -9.81930 -9.68760 -8.83688 -7.84640 -5.08854 -0.28181 0.05073 1.37686 1.45911 1.48614 1.55379 1.93669 2.30690 2.60861 2.63431 3.25230 3.49915 3.55901 3.57715 3.77486 3.86595 3.99588 4.03986 4.14333 4.19161 4.23651 4.31398 4.44069 4.53613 4.55843 4.58062 4.60010 4.66550 4.68664 4.78387 4.82122 4.84161 4.86833 4.97510 5.02078 5.05686 5.13030 5.14184 5.16289 5.21253 5.28396 5.35958 5.38795 5.53277 5.54524 5.63745 5.67669 5.77097 6.35047 6.38067 6.39731 6.82020 6.97898 7.45496 8.22692 8.45095 9.38845 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014072 B = 0.003446 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.290054 B = 8124.445172 C = 8684.593348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.195 3.805 4 N -0.716 5.716 5 C -0.201 4.201 6 H 0.073 0.927 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.301 1.301 12 H -0.305 1.305 13 C -0.123 4.123 14 C 0.128 3.872 15 N -0.580 5.580 16 C 0.577 3.423 17 O -0.582 6.582 18 C -0.214 4.214 19 C 0.007 3.993 20 C -0.122 4.122 21 C -0.172 4.172 22 C 0.157 3.843 23 C -0.104 4.104 24 N -0.530 5.530 25 C 0.334 3.666 26 O -0.495 6.495 27 C 0.124 3.876 28 C -0.120 4.120 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.040 0.960 33 H 0.075 0.925 34 H 0.371 0.629 35 H 0.243 0.757 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.111 0.889 43 H 0.188 0.812 44 H 0.094 0.906 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.416 0.584 48 H 0.084 0.916 49 H 0.047 0.953 50 H 0.085 0.915 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 -1.264 24.555 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C 0.105 3.895 4 N -0.356 5.356 5 C -0.333 4.333 6 H 0.091 0.909 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.229 1.229 12 H -0.233 1.233 13 C -0.163 4.163 14 C 0.006 3.994 15 N -0.310 5.310 16 C 0.365 3.635 17 O -0.463 6.463 18 C -0.220 4.220 19 C -0.001 4.001 20 C -0.178 4.178 21 C -0.191 4.191 22 C 0.020 3.980 23 C -0.161 4.161 24 N -0.251 5.251 25 C 0.155 3.845 26 O -0.304 6.304 27 C 0.001 3.999 28 C -0.159 4.159 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.204 0.796 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.130 0.870 43 H 0.205 0.795 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.092 0.908 47 H 0.276 0.724 48 H 0.102 0.898 49 H 0.065 0.935 50 H 0.103 0.897 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.007 -0.710 24.021 24.363 hybrid contribution 0.603 0.033 -2.223 2.304 sum 4.610 -0.677 21.798 22.290 Atomic orbital electron populations 1.21585 0.95943 1.00439 1.01330 1.21855 0.96392 0.96857 1.00725 1.19845 0.90699 0.91817 0.87120 1.42578 1.55280 1.36956 1.00781 1.19354 1.24748 1.05088 0.84150 0.90932 1.25262 1.02703 0.98142 1.00454 1.69793 1.43202 1.18958 1.29984 0.85400 0.76702 0.77192 0.82529 1.19224 1.22892 1.23333 1.22194 0.97927 0.94443 1.01734 1.21369 0.98335 0.93340 0.86362 1.48024 1.07873 1.50415 1.24705 1.18124 0.85281 0.77778 0.82363 1.90737 1.16758 1.63498 1.75347 1.20766 1.09148 0.96154 0.95955 1.20597 0.91782 0.97651 0.90059 1.21010 1.02429 0.89315 1.05036 1.22186 1.01634 0.94338 1.00938 1.21936 0.91784 0.92371 0.91916 1.20928 1.02283 1.00052 0.92789 1.67104 1.17324 1.40923 0.99726 1.19167 0.92838 0.87258 0.85211 1.84697 1.42849 1.70833 1.32038 1.21501 0.79175 0.98513 1.00713 1.22018 1.02128 0.93960 0.97746 0.94481 0.93246 0.92246 0.94114 0.90674 0.79628 0.94765 0.91961 0.90685 0.93215 0.90979 0.88285 0.92905 0.87030 0.79453 0.88735 0.87074 0.90798 0.72369 0.89814 0.93502 0.89656 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.41 71.98 0.68 -3.51 16 2 C -0.12 -3.64 4.78 30.59 0.15 -3.50 16 3 C 0.20 6.60 0.44 3.63 0.00 6.60 16 4 N -0.72 -31.96 2.99 -303.23 -0.91 -32.87 16 5 C -0.20 -10.25 8.59 84.04 0.72 -9.53 16 6 H 0.07 3.63 6.78 -2.91 -0.02 3.61 16 7 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 8 N -0.97 -58.10 13.07 21.65 0.28 -57.82 16 9 Si 0.95 46.20 29.55 68.60 2.03 48.23 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.31 -15.29 7.11 99.48 0.71 -14.59 16 13 C -0.12 -4.14 4.64 30.67 0.14 -4.00 16 14 C 0.13 4.86 6.18 86.36 0.53 5.40 16 15 N -0.58 -19.92 2.98 -823.49 -2.45 -22.38 16 16 C 0.58 19.79 5.31 86.69 0.46 20.25 16 17 O -0.58 -23.46 16.52 -3.98 -0.07 -23.53 16 18 C -0.21 -6.09 3.66 -19.91 -0.07 -6.16 16 19 C 0.01 0.14 5.81 -19.41 -0.11 0.03 16 20 C -0.12 -1.90 9.68 71.24 0.69 -1.21 16 21 C -0.17 -2.57 9.41 22.32 0.21 -2.36 16 22 C 0.16 2.93 6.78 42.58 0.29 3.21 16 23 C -0.10 -1.06 10.16 71.24 0.72 -0.34 16 24 N -0.53 -14.15 10.28 -296.06 -3.04 -17.20 16 25 C 0.33 10.01 7.77 85.13 0.66 10.67 16 26 O -0.49 -15.67 13.01 -87.18 -1.13 -16.81 16 27 C 0.12 3.93 6.04 86.22 0.52 4.46 16 28 C -0.12 -3.34 4.72 30.53 0.14 -3.19 16 29 H 0.04 1.44 7.26 -2.39 -0.02 1.42 16 30 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.57 6.83 -2.39 -0.02 1.56 16 32 H 0.04 1.40 7.56 -2.39 -0.02 1.38 16 33 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.37 18.49 6.61 -92.71 -0.61 17.88 16 35 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.06 2.27 7.22 -2.39 -0.02 2.25 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.05 2.29 7.62 -2.39 -0.02 2.28 16 39 H 0.07 2.77 7.00 -2.38 -0.02 2.75 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.05 1.12 7.20 -2.39 -0.02 1.10 16 42 H 0.11 1.00 8.10 -2.39 -0.02 0.98 16 43 H 0.19 1.09 8.06 -2.91 -0.02 1.07 16 44 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.11 0.43 8.07 -2.39 -0.02 0.41 16 46 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.42 9.79 9.06 -74.05 -0.67 9.12 16 48 H 0.08 2.38 6.23 -2.39 -0.01 2.37 16 49 H 0.05 1.84 7.02 -2.39 -0.02 1.82 16 50 H 0.09 2.28 6.64 -2.39 -0.02 2.26 16 51 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -73.78 401.17 0.59 -73.20 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.32 Total: 35.99 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.20 Total: 13.19 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -6.12 Total: -130.27 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.20 Total: -40.34 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -73.78 0.59 -73.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673606054.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.407 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds