Wall clock time and date at job start Wed Apr 1 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46940 * 2 1 4 4 N 1.46501 * 109.46074 * 305.34017 * 3 2 1 5 5 C 1.36930 * 120.00393 * 295.17265 * 4 3 2 6 6 H 1.08005 * 120.00307 * 5.07183 * 5 4 3 7 7 C 1.38815 * 120.00383 * 185.07072 * 5 4 3 8 8 N 1.31619 * 119.99645 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00147 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46681 * 60.00496 * 9 7 5 11 11 H 1.48505 * 109.46815 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47110 * 300.00346 * 9 7 5 13 13 C 1.53043 * 109.45939 * 185.37114 * 3 2 1 14 14 C 1.53192 * 109.31548 * 178.62867 * 13 3 2 15 15 N 1.46920 * 108.77407 * 54.63137 * 14 13 3 16 16 C 1.34782 * 120.63090 * 126.37000 * 15 14 13 17 17 O 1.21280 * 119.99393 * 5.39177 * 16 15 14 18 18 C 1.50694 * 120.00206 * 185.38625 * 16 15 14 19 19 C 1.50704 * 115.54578 * 66.51674 * 18 16 15 20 20 C 1.35443 * 126.77881 * 29.75098 * 19 18 16 21 21 C 1.41386 * 103.98821 * 180.02562 * 20 19 18 22 22 C 1.50691 * 126.80461 * 180.02562 * 21 20 19 23 23 N 1.30181 * 106.39006 * 0.02562 * 21 20 19 24 24 O 1.20912 * 111.60779 * 359.97438 * 23 21 20 25 25 C 1.52994 * 117.50023 * 212.18063 * 18 16 15 26 26 C 1.52998 * 117.50329 * 280.84405 * 18 16 15 27 27 C 1.46927 * 118.74135 * 306.64792 * 15 14 13 28 28 C 1.52760 * 109.01040 * 53.30840 * 27 15 14 29 29 H 1.09006 * 109.46530 * 304.74883 * 1 2 3 30 30 H 1.08992 * 109.47272 * 64.75036 * 1 2 3 31 31 H 1.08998 * 109.46769 * 184.75595 * 1 2 3 32 32 H 1.09000 * 109.46937 * 240.00196 * 2 1 3 33 33 H 1.09000 * 109.47610 * 120.00069 * 2 1 3 34 34 H 0.96998 * 119.99659 * 115.16780 * 4 3 2 35 35 H 0.97002 * 120.00195 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.49849 * 58.67671 * 13 3 2 37 37 H 1.09001 * 109.52435 * 298.59999 * 13 3 2 38 38 H 1.09008 * 109.58153 * 294.84768 * 14 13 3 39 39 H 1.08996 * 109.70650 * 174.49551 * 14 13 3 40 40 H 1.07998 * 128.00757 * 359.97438 * 20 19 18 41 41 H 1.08999 * 109.47569 * 269.99684 * 22 21 20 42 42 H 1.08998 * 109.47669 * 29.99946 * 22 21 20 43 43 H 1.08999 * 109.47278 * 149.99954 * 22 21 20 44 44 H 1.09001 * 117.50097 * 215.00330 * 25 18 16 45 45 H 1.08997 * 117.50135 * 0.02916 * 25 18 16 46 46 H 1.08998 * 117.49609 * 359.97438 * 26 18 16 47 47 H 1.08999 * 117.49749 * 144.97250 * 26 18 16 48 48 H 1.09005 * 109.58797 * 173.14362 * 27 15 14 49 49 H 1.09004 * 109.58641 * 293.56523 * 27 15 14 50 50 H 1.08999 * 109.56550 * 185.55411 * 28 27 15 51 51 H 1.09003 * 109.38598 * 65.51099 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.4493 2.1690 -1.1268 5 6 1.7485 1.8008 -2.4113 6 1 2.3536 0.9253 -2.5951 7 6 1.2741 2.5528 -3.4773 8 7 0.5363 3.6195 -3.2534 9 14 1.6829 2.0508 -5.2296 10 1 1.1554 0.6872 -5.4896 11 1 1.0612 3.0105 -6.1771 12 1 3.1562 2.0554 -5.4148 13 6 3.5644 1.4444 -0.1351 14 6 4.0684 2.8907 -0.1692 15 7 3.5670 3.5942 1.0192 16 6 4.4150 4.2420 1.8425 17 8 5.5898 4.3312 1.5548 18 6 3.9035 4.8553 3.1204 19 6 3.4119 3.8795 4.1583 20 6 3.8497 2.6125 4.3520 21 6 3.0694 2.1429 5.4335 22 6 3.1394 0.7799 6.0723 23 7 2.2786 3.1213 5.7681 24 8 2.4542 4.0939 5.0715 25 6 4.5907 6.1287 3.6174 26 6 3.1836 6.2015 3.0193 27 6 2.1243 3.5732 1.2964 28 6 1.6415 2.1239 1.3111 29 1 -0.3632 0.5858 0.8445 30 1 -0.3633 0.4383 -0.9294 31 1 -0.3633 -1.0241 0.0852 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.8463 2.9109 -0.9629 35 1 0.2050 4.1452 -3.9983 36 1 3.8485 0.9383 -1.0577 37 1 4.0061 0.9252 0.7155 38 1 3.7005 3.3846 -1.0686 39 1 5.1583 2.9003 -0.1669 40 1 4.6166 2.0832 3.8061 41 1 2.4490 0.1053 5.5660 42 1 4.1542 0.3910 5.9886 43 1 2.8656 0.8572 7.1245 44 1 4.6872 6.2608 4.6951 45 1 5.4125 6.5231 3.0198 46 1 3.0803 6.6438 2.0284 47 1 2.3540 6.3813 3.7031 48 1 1.9319 4.0308 2.2669 49 1 1.5947 4.1240 0.5191 50 1 0.5570 2.1015 1.4178 51 1 2.1005 1.5981 2.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673609607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:04 Heat of formation + Delta-G solvation = 66.807491 kcal Electronic energy + Delta-G solvation = -33165.454450 eV Core-core repulsion = 29069.504660 eV Total energy + Delta-G solvation = -4095.949790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.06039 -40.44227 -38.46833 -36.70968 -34.92239 -34.80307 -32.62884 -31.65396 -30.87727 -30.12823 -29.11756 -28.83709 -25.84543 -24.33810 -23.69572 -23.40135 -22.91643 -22.57793 -21.54760 -20.35021 -19.17815 -18.36271 -17.70442 -17.43902 -17.07708 -16.63864 -15.91286 -15.42257 -14.89354 -14.43493 -14.40290 -14.12642 -13.87059 -13.77390 -13.65983 -13.53179 -13.34279 -13.20061 -13.12289 -12.80540 -12.56905 -12.40461 -12.08248 -11.81214 -11.70054 -11.48346 -11.28388 -11.23359 -11.19037 -10.94396 -10.88552 -10.74638 -10.63513 -10.38643 -10.27024 -10.11342 -10.03563 -9.76528 -9.63239 -9.42589 -9.24984 -8.94126 -8.26291 -6.96917 -5.80127 -3.08234 1.26662 2.09385 2.30765 2.97271 3.20582 3.41057 3.46408 3.47501 3.55884 4.04308 4.07109 4.38391 4.55809 4.56682 4.62291 4.91417 5.08987 5.12177 5.28004 5.28153 5.29452 5.37084 5.40118 5.41955 5.53531 5.56659 5.59944 5.61215 5.66682 5.70268 5.81844 5.87232 5.92192 5.94924 5.97396 6.01968 6.11616 6.16936 6.28285 6.37068 6.48280 6.58682 6.62676 6.77813 6.84103 6.90245 7.04983 7.12467 7.65747 7.69381 8.12949 8.27400 8.38378 9.50243 10.06068 10.42079 11.42042 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013149 B = 0.003858 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.882873 B = 7256.210511 C = 8322.040456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.124 4.124 3 C 0.204 3.796 4 N -0.712 5.712 5 C -0.230 4.230 6 H 0.068 0.932 7 C -0.009 4.009 8 N -0.931 5.931 9 Si 0.899 3.101 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.287 1.287 13 C -0.131 4.131 14 C 0.121 3.879 15 N -0.584 5.584 16 C 0.556 3.444 17 O -0.539 6.539 18 C -0.090 4.090 19 C 0.018 3.982 20 C -0.214 4.214 21 C 0.022 3.978 22 C -0.076 4.076 23 N -0.364 5.364 24 O 0.100 5.900 25 C -0.127 4.127 26 C -0.148 4.148 27 C 0.112 3.888 28 C -0.130 4.130 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.168 0.832 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.116 0.884 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.084 0.916 50 H 0.076 0.924 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -0.436 16.930 17.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.112 3.888 4 N -0.353 5.353 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.205 4.205 8 N -0.580 5.580 9 Si 0.731 3.269 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.214 1.214 13 C -0.171 4.171 14 C 0.000 4.000 15 N -0.315 5.315 16 C 0.341 3.659 17 O -0.417 6.417 18 C -0.095 4.095 19 C -0.046 4.046 20 C -0.236 4.236 21 C -0.137 4.137 22 C -0.133 4.133 23 N -0.070 5.070 24 O 0.034 5.966 25 C -0.164 4.164 26 C -0.185 4.185 27 C -0.010 4.010 28 C -0.168 4.168 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.186 0.814 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.089 0.911 49 H 0.102 0.898 50 H 0.094 0.906 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.373 -0.311 17.518 18.058 hybrid contribution 0.463 -0.532 -1.557 1.709 sum 4.836 -0.843 15.961 16.699 Atomic orbital electron populations 1.21636 0.96098 0.99217 1.02645 1.21929 0.96357 0.98241 0.99876 1.19522 0.90836 0.91060 0.87345 1.42410 1.54578 1.38013 1.00334 1.19024 1.26825 1.07355 0.82955 0.91374 1.24663 1.00859 0.97501 0.97490 1.69630 1.39696 1.18276 1.30354 0.86392 0.77814 0.77375 0.85339 1.21469 1.21890 1.21361 1.22259 0.98145 0.95476 1.01216 1.21654 0.98687 0.92638 0.87013 1.48013 1.07503 1.50657 1.25306 1.18832 0.85552 0.78662 0.82810 1.90689 1.16490 1.59527 1.74953 1.19405 1.08510 0.88380 0.93207 1.22775 0.92444 0.95596 0.93765 1.22298 1.05286 0.94961 1.01042 1.23537 0.95095 0.98043 0.97018 1.20170 1.03640 0.89039 1.00465 1.73840 1.21864 0.95768 1.15489 1.84792 1.44366 1.32884 1.34515 1.23180 0.96701 0.94380 1.02186 1.23275 0.96600 0.94217 1.04384 1.21670 0.80046 0.98084 1.01245 1.22028 1.01336 0.95167 0.98297 0.93997 0.90846 0.94910 0.92267 0.94253 0.78251 0.93578 0.90528 0.93573 0.88987 0.90579 0.81410 0.89947 0.90011 0.90613 0.87494 0.86589 0.86869 0.86789 0.91061 0.89831 0.90601 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.47 37.16 0.35 -1.96 16 2 C -0.12 -2.08 4.80 -26.73 -0.13 -2.20 16 3 C 0.20 3.52 0.44 -131.77 -0.06 3.47 16 4 N -0.71 -15.15 3.19 -47.19 -0.15 -15.30 16 5 C -0.23 -5.63 8.56 -15.06 -0.13 -5.76 16 6 H 0.07 1.66 6.78 -52.48 -0.36 1.30 16 7 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 8 N -0.93 -26.02 13.06 55.49 0.72 -25.29 16 9 Si 0.90 21.37 29.55 -169.99 -5.02 16.34 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 13 C -0.13 -2.21 4.63 -26.61 -0.12 -2.34 16 14 C 0.12 2.13 6.16 -3.71 -0.02 2.11 16 15 N -0.58 -9.21 2.98 -173.03 -0.52 -9.73 16 16 C 0.56 8.62 6.56 -10.99 -0.07 8.55 16 17 O -0.54 -9.90 16.16 5.56 0.09 -9.81 16 18 C -0.09 -1.12 1.29 -156.82 -0.20 -1.32 16 19 C 0.02 0.22 5.33 -35.30 -0.19 0.03 16 20 C -0.21 -2.63 10.59 -39.38 -0.42 -3.04 16 21 C 0.02 0.26 7.33 -82.10 -0.60 -0.35 16 22 C -0.08 -0.64 10.47 36.00 0.38 -0.26 16 23 N -0.36 -4.84 12.07 33.42 0.40 -4.44 16 24 O 0.10 1.29 10.97 17.16 0.19 1.47 16 25 C -0.13 -1.29 9.76 -26.70 -0.26 -1.55 16 26 C -0.15 -1.48 9.29 -26.69 -0.25 -1.73 16 27 C 0.11 1.68 5.81 -3.93 -0.02 1.65 16 28 C -0.13 -1.96 4.72 -26.83 -0.13 -2.09 16 29 H 0.04 0.65 6.34 -51.93 -0.33 0.32 16 30 H 0.07 1.45 7.64 -51.93 -0.40 1.06 16 31 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 1.07 7.63 -51.93 -0.40 0.68 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.38 8.89 6.64 -40.82 -0.27 8.62 16 35 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.08 1.38 7.17 -51.93 -0.37 1.01 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 1.90 7.57 -51.92 -0.39 1.51 16 39 H 0.08 1.35 7.04 -51.93 -0.37 0.98 16 40 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.12 1.22 8.01 -51.93 -0.42 0.80 16 46 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.11 0.98 8.00 -51.93 -0.42 0.57 16 48 H 0.07 0.95 4.95 -51.93 -0.26 0.69 16 49 H 0.08 1.41 7.04 -51.93 -0.37 1.04 16 50 H 0.08 1.15 6.42 -51.93 -0.33 0.81 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 400.88 15.07 6.04 6.04 Total: -1.00 -28.74 400.88 -8.24 -36.98 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -8.03 Total: 10.86 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.97 Total: -7.12 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.46 Total: -54.77 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: 0.28 Total: -8.34 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.74 -8.24 -36.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673609607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.784 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds