Wall clock time and date at job start Wed Apr 1 2020 04:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46833 * 2 1 4 4 C 1.38362 * 120.26587 * 269.97130 * 3 2 1 5 5 N 1.31884 * 121.18180 * 180.02562 * 4 3 2 6 6 C 1.32236 * 121.79896 * 359.65552 * 5 4 3 7 7 O 1.35434 * 119.79826 * 180.33672 * 6 5 4 8 8 C 1.40281 * 120.40181 * 0.63327 * 6 5 4 9 9 C 1.47523 * 120.59949 * 179.67823 * 8 6 5 10 10 O 1.21588 * 119.99929 * 37.48479 * 9 8 6 11 11 N 1.34776 * 120.00456 * 217.48649 * 9 8 6 12 12 C 1.46929 * 120.62793 * 6.19129 * 11 9 8 13 13 C 1.53189 * 108.77837 * 126.36593 * 12 11 9 14 14 C 1.53045 * 109.30792 * 54.63421 * 13 12 11 15 15 H 1.08999 * 109.46010 * 58.64408 * 14 13 12 16 16 C 1.53003 * 109.45721 * 178.61155 * 14 13 12 17 17 C 1.53036 * 109.54053 * 298.63626 * 14 13 12 18 18 C 1.46918 * 120.63494 * 186.16827 * 11 9 8 19 19 H 1.08999 * 109.58686 * 113.84251 * 18 11 9 20 20 C 1.53004 * 109.58699 * 353.41614 * 18 11 9 21 21 N 1.46501 * 109.46816 * 70.88139 * 20 18 11 22 22 C 1.36934 * 119.99853 * 181.48801 * 21 20 18 23 23 H 1.08001 * 120.00260 * 359.97438 * 22 21 20 24 24 C 1.38820 * 120.00152 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00185 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 119.99659 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47242 * 90.00441 * 26 24 22 28 28 H 1.48501 * 109.47040 * 210.00462 * 26 24 22 29 29 H 1.48502 * 109.47509 * 330.00476 * 26 24 22 30 30 C 1.38333 * 120.27563 * 90.00414 * 3 2 1 31 31 H 1.09007 * 109.47163 * 300.00310 * 1 2 3 32 32 H 1.08996 * 109.46972 * 59.99896 * 1 2 3 33 33 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46655 * 239.99667 * 2 1 3 35 35 H 1.09000 * 109.47147 * 119.99626 * 2 1 3 36 36 H 1.07997 * 119.40713 * 0.03274 * 4 3 2 37 37 H 0.96697 * 113.99788 * 270.29622 * 7 6 5 38 38 H 1.09001 * 109.58731 * 246.15902 * 12 11 9 39 39 H 1.09003 * 109.58675 * 6.43896 * 12 11 9 40 40 H 1.08999 * 109.49992 * 174.58270 * 13 12 11 41 41 H 1.09001 * 109.50334 * 294.65615 * 13 12 11 42 42 H 1.08995 * 109.46867 * 60.00910 * 16 14 13 43 43 H 1.09000 * 109.46926 * 180.02562 * 16 14 13 44 44 H 1.08997 * 109.47602 * 299.99793 * 16 14 13 45 45 H 1.09004 * 109.49479 * 301.41131 * 17 14 13 46 46 H 1.08999 * 109.49650 * 181.31968 * 17 14 13 47 47 H 1.08996 * 109.47320 * 190.88357 * 20 18 11 48 48 H 1.08996 * 109.47130 * 310.88608 * 20 18 11 49 49 H 0.96998 * 119.99916 * 1.48274 * 21 20 18 50 50 H 0.96998 * 120.00259 * 179.97438 * 25 24 22 51 51 H 1.08001 * 120.82075 * 359.94796 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2653 2.0781 -1.1950 5 7 2.7053 3.3212 -1.2161 6 6 2.9371 3.9973 -0.1035 7 8 3.3821 5.2746 -0.1725 8 6 2.7307 3.3975 1.1477 9 6 2.9947 4.1454 2.3916 10 8 2.7296 5.3303 2.4565 11 7 3.5296 3.5153 3.4562 12 6 3.9802 2.1207 3.3521 13 6 5.4345 2.0357 3.8259 14 6 5.5438 2.6282 5.2328 15 1 4.8863 2.0818 5.9090 16 6 6.9885 2.5136 5.7232 17 6 5.1314 4.1017 5.2011 18 6 3.6737 4.2100 4.7427 19 1 3.0223 3.7462 5.4834 20 6 3.2970 5.6835 4.5750 21 7 1.8502 5.7979 4.3755 22 6 1.2823 7.0271 4.1711 23 1 1.9010 7.9122 4.1574 24 6 -0.0887 7.1356 3.9825 25 7 -0.6346 8.3172 3.7866 26 14 -1.1588 5.6048 4.0070 27 1 -1.6208 5.3459 5.3943 28 1 -2.3350 5.8089 3.1236 29 1 -0.3716 4.4426 3.5224 30 6 2.2648 2.0783 1.1947 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0835 1.5640 -2.1272 37 1 4.3455 5.3547 -0.1943 38 1 3.3538 1.4865 3.9793 39 1 3.9116 1.7910 2.3154 40 1 5.7506 0.9927 3.8449 41 1 6.0729 2.5971 3.1437 42 1 7.6462 3.0596 5.0469 43 1 7.0665 2.9352 6.7254 44 1 7.2820 1.4642 5.7471 45 1 5.7726 4.6440 4.5062 46 1 5.2319 4.5291 6.1987 47 1 3.5854 6.2363 5.4691 48 1 3.8167 6.0952 3.7099 49 1 1.2945 5.0030 4.3881 50 1 -1.5925 8.3930 3.6545 51 1 2.0901 1.5864 2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689103798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:35 Heat of formation + Delta-G solvation = 12.891407 kcal Electronic energy + Delta-G solvation = -32959.163496 eV Core-core repulsion = 28860.875729 eV Total energy + Delta-G solvation = -4098.287767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09638 -39.78170 -37.59637 -37.06610 -34.83681 -34.38947 -33.93003 -32.51226 -31.43898 -30.24519 -29.23417 -28.34110 -25.74735 -24.78751 -24.30335 -23.20364 -22.80456 -22.01915 -21.10343 -20.14369 -19.30049 -18.58724 -17.48591 -17.13857 -16.67288 -16.06820 -15.60315 -15.07496 -14.99400 -14.61956 -14.47693 -14.24934 -14.16538 -14.01737 -13.72809 -13.54657 -13.40184 -13.18470 -13.01250 -12.88256 -12.56541 -12.31264 -12.20208 -12.03012 -11.92843 -11.85960 -11.76485 -11.45043 -11.29753 -11.27081 -11.08155 -10.87146 -10.75495 -10.60146 -10.22802 -9.99912 -9.73133 -9.59611 -9.37229 -8.84982 -8.77451 -8.38508 -8.21741 -6.82643 -5.52942 -2.79716 0.69418 1.01116 3.11470 3.13897 3.48213 3.50383 3.54651 3.56852 3.75982 4.41771 4.47259 4.56002 4.62994 4.64440 4.65872 4.77216 4.79532 4.89500 5.00367 5.06988 5.13993 5.17583 5.28396 5.32529 5.42601 5.45084 5.48462 5.57430 5.58132 5.59637 5.63999 5.65872 5.76020 5.78979 5.80240 5.89644 5.94862 5.96875 5.98416 6.03213 6.05104 6.16163 6.34096 6.34640 6.55130 6.82378 7.17097 7.55541 7.73976 7.84672 8.22201 8.64544 8.74860 9.44819 10.17894 10.37661 11.67166 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006915 B = 0.005869 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4048.472857 B = 4770.032412 C = 7047.993860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.074 4.074 3 C -0.157 4.157 4 C 0.137 3.863 5 N -0.503 5.503 6 C 0.353 3.647 7 O -0.455 6.455 8 C -0.177 4.177 9 C 0.518 3.482 10 O -0.415 6.415 11 N -0.613 5.613 12 C 0.100 3.900 13 C -0.127 4.127 14 C -0.092 4.092 15 H 0.070 0.930 16 C -0.145 4.145 17 C -0.121 4.121 18 C 0.141 3.859 19 H 0.067 0.933 20 C 0.162 3.838 21 N -0.726 5.726 22 C -0.202 4.202 23 H 0.087 0.913 24 C -0.004 4.004 25 N -0.942 5.942 26 Si 0.882 3.118 27 H -0.289 1.289 28 H -0.295 1.295 29 H -0.284 1.284 30 C -0.039 4.039 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.160 0.840 37 H 0.396 0.604 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.021 0.979 48 H 0.057 0.943 49 H 0.354 0.646 50 H 0.255 0.745 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.362 -22.861 -3.819 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.159 4.159 4 C -0.021 4.021 5 N -0.221 5.221 6 C 0.174 3.826 7 O -0.261 6.261 8 C -0.184 4.184 9 C 0.302 3.698 10 O -0.282 6.282 11 N -0.352 5.352 12 C -0.023 4.023 13 C -0.166 4.166 14 C -0.111 4.111 15 H 0.089 0.911 16 C -0.202 4.202 17 C -0.159 4.159 18 C 0.038 3.962 19 H 0.085 0.915 20 C 0.035 3.965 21 N -0.370 5.370 22 C -0.333 4.333 23 H 0.105 0.895 24 C -0.198 4.198 25 N -0.593 5.593 26 Si 0.714 3.286 27 H -0.217 1.217 28 H -0.221 1.221 29 H -0.211 1.211 30 C -0.065 4.065 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.177 0.823 37 H 0.254 0.746 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.186 0.814 50 H 0.065 0.935 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.760 -21.246 -4.580 25.724 hybrid contribution -0.696 -1.676 0.657 1.930 sum 13.064 -22.922 -3.924 26.674 Atomic orbital electron populations 1.21799 0.94458 1.01912 1.02697 1.20425 0.96333 0.91291 1.03188 1.20822 1.02766 0.98584 0.93774 1.22510 0.93121 0.88919 0.97594 1.67274 1.14762 1.08543 1.31555 1.19147 0.92879 0.84253 0.86320 1.84905 1.27008 1.18838 1.95344 1.21359 1.06409 0.95016 0.95631 1.17922 0.81300 0.87923 0.82702 1.91264 1.44860 1.12629 1.79412 1.47789 1.63864 1.12657 1.10889 1.21975 0.94946 0.83429 1.01973 1.21978 0.96535 1.01017 0.97035 1.21120 0.97057 0.96523 0.96366 0.91137 1.21811 0.95967 1.01315 1.01133 1.21966 0.96072 0.95853 1.02057 1.21559 0.95598 0.95237 0.83815 0.91465 1.20952 0.87102 0.90021 0.98459 1.42612 1.01913 1.05824 1.86625 1.18971 0.91061 0.85112 1.38123 0.89521 1.24547 0.96429 0.95632 1.03145 1.69686 1.10532 1.21291 1.57753 0.86554 0.80734 0.84281 0.77034 1.21671 1.22147 1.21097 1.21725 0.93573 0.92412 0.98813 0.92395 0.92338 0.92096 0.90516 0.90754 0.82331 0.74579 0.91898 0.89599 0.91142 0.91563 0.92738 0.92579 0.92918 0.91312 0.90636 0.96189 0.92531 0.81421 0.93537 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.90 37.16 0.37 -0.84 16 2 C -0.07 -0.54 6.08 -27.88 -0.17 -0.71 16 3 C -0.16 -1.66 5.14 -104.54 -0.54 -2.20 16 4 C 0.14 1.59 10.84 -17.48 -0.19 1.40 16 5 N -0.50 -7.61 10.37 -12.98 -0.13 -7.75 16 6 C 0.35 5.88 7.74 -16.61 -0.13 5.75 16 7 O -0.46 -7.90 12.28 -34.66 -0.43 -8.32 16 8 C -0.18 -2.84 5.22 -104.69 -0.55 -3.39 16 9 C 0.52 9.46 6.79 -12.48 -0.08 9.37 16 10 O -0.41 -9.73 9.76 -11.38 -0.11 -9.84 16 11 N -0.61 -9.01 2.97 -166.45 -0.49 -9.50 16 12 C 0.10 1.03 4.86 -3.71 -0.02 1.01 16 13 C -0.13 -1.09 5.36 -26.61 -0.14 -1.23 16 14 C -0.09 -0.83 2.68 -90.58 -0.24 -1.08 16 15 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 16 C -0.14 -1.11 9.19 37.16 0.34 -0.77 16 17 C -0.12 -1.40 4.63 -26.61 -0.12 -1.52 16 18 C 0.14 2.16 2.91 -67.60 -0.20 1.97 16 19 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 20 C 0.16 3.32 4.87 -4.04 -0.02 3.30 16 21 N -0.73 -18.52 3.14 -59.91 -0.19 -18.71 16 22 C -0.20 -6.18 9.91 -15.06 -0.15 -6.33 16 23 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 24 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 25 N -0.94 -31.87 13.97 55.49 0.78 -31.10 16 26 Si 0.88 24.32 27.74 -169.99 -4.71 19.61 16 27 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 28 H -0.29 -8.27 7.11 56.52 0.40 -7.87 16 29 H -0.28 -7.55 6.52 56.52 0.37 -7.18 16 30 C -0.04 -0.49 7.16 -38.89 -0.28 -0.77 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 36 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.40 4.68 9.06 45.56 0.41 5.09 16 38 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.09 0.82 4.62 -51.93 -0.24 0.58 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.02 0.42 8.11 -51.93 -0.42 0.00 16 48 H 0.06 1.27 6.17 -51.93 -0.32 0.95 16 49 H 0.35 9.03 5.33 -40.82 -0.22 8.81 16 50 H 0.25 8.24 8.31 -40.82 -0.34 7.90 16 51 H 0.14 1.55 6.42 -52.49 -0.34 1.21 16 LS Contribution 395.89 15.07 5.97 5.97 Total: -1.00 -39.29 395.89 -9.01 -48.30 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.47 Total: 7.60 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: -2.21 Total: 3.75 kcal Atomic # 7 Polarization: -67.02 SS G_CDS: -0.04 Total: -67.06 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.54 Total: -18.17 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -4.71 Total: 19.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.29 -9.01 -48.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689103798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.193 kcal (2) G-P(sol) polarization free energy of solvation -39.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds