Wall clock time and date at job start Wed Apr 1 2020 04:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.46833 * 2 1 4 4 C 1.38362 * 120.26587 * 269.97130 * 3 2 1 5 5 N 1.31884 * 121.18180 * 180.02562 * 4 3 2 6 6 C 1.32236 * 121.79896 * 359.65552 * 5 4 3 7 7 O 1.35434 * 119.79826 * 180.33672 * 6 5 4 8 8 C 1.40281 * 120.40181 * 0.63327 * 6 5 4 9 9 C 1.47523 * 120.59949 * 179.67823 * 8 6 5 10 10 O 1.21588 * 119.99929 * 37.48479 * 9 8 6 11 11 N 1.34776 * 120.00456 * 217.48649 * 9 8 6 12 12 C 1.46929 * 120.62793 * 6.19129 * 11 9 8 13 13 C 1.53189 * 108.77837 * 126.36593 * 12 11 9 14 14 C 1.53045 * 109.30792 * 54.63421 * 13 12 11 15 15 H 1.08999 * 109.46010 * 58.64408 * 14 13 12 16 16 C 1.53003 * 109.45721 * 178.61155 * 14 13 12 17 17 C 1.53036 * 109.54053 * 298.63626 * 14 13 12 18 18 C 1.46918 * 120.63494 * 186.16827 * 11 9 8 19 19 H 1.08999 * 109.58686 * 113.84251 * 18 11 9 20 20 C 1.53004 * 109.58699 * 353.41614 * 18 11 9 21 21 N 1.46501 * 109.46816 * 70.88139 * 20 18 11 22 22 C 1.36934 * 119.99853 * 181.48801 * 21 20 18 23 23 H 1.08001 * 120.00260 * 359.97438 * 22 21 20 24 24 C 1.38820 * 120.00152 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00185 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 119.99659 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47242 * 90.00441 * 26 24 22 28 28 H 1.48501 * 109.47040 * 210.00462 * 26 24 22 29 29 H 1.48502 * 109.47509 * 330.00476 * 26 24 22 30 30 C 1.38333 * 120.27563 * 90.00414 * 3 2 1 31 31 H 1.09007 * 109.47163 * 300.00310 * 1 2 3 32 32 H 1.08996 * 109.46972 * 59.99896 * 1 2 3 33 33 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46655 * 239.99667 * 2 1 3 35 35 H 1.09000 * 109.47147 * 119.99626 * 2 1 3 36 36 H 1.07997 * 119.40713 * 0.03274 * 4 3 2 37 37 H 0.96697 * 113.99788 * 270.29622 * 7 6 5 38 38 H 1.09001 * 109.58731 * 246.15902 * 12 11 9 39 39 H 1.09003 * 109.58675 * 6.43896 * 12 11 9 40 40 H 1.08999 * 109.49992 * 174.58270 * 13 12 11 41 41 H 1.09001 * 109.50334 * 294.65615 * 13 12 11 42 42 H 1.08995 * 109.46867 * 60.00910 * 16 14 13 43 43 H 1.09000 * 109.46926 * 180.02562 * 16 14 13 44 44 H 1.08997 * 109.47602 * 299.99793 * 16 14 13 45 45 H 1.09004 * 109.49479 * 301.41131 * 17 14 13 46 46 H 1.08999 * 109.49650 * 181.31968 * 17 14 13 47 47 H 1.08996 * 109.47320 * 190.88357 * 20 18 11 48 48 H 1.08996 * 109.47130 * 310.88608 * 20 18 11 49 49 H 0.96998 * 119.99916 * 1.48274 * 21 20 18 50 50 H 0.96998 * 120.00259 * 179.97438 * 25 24 22 51 51 H 1.08001 * 120.82075 * 359.94796 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2653 2.0781 -1.1950 5 7 2.7053 3.3212 -1.2161 6 6 2.9371 3.9973 -0.1035 7 8 3.3821 5.2746 -0.1725 8 6 2.7307 3.3975 1.1477 9 6 2.9947 4.1454 2.3916 10 8 2.7296 5.3303 2.4565 11 7 3.5296 3.5153 3.4562 12 6 3.9802 2.1207 3.3521 13 6 5.4345 2.0357 3.8259 14 6 5.5438 2.6282 5.2328 15 1 4.8863 2.0818 5.9090 16 6 6.9885 2.5136 5.7232 17 6 5.1314 4.1017 5.2011 18 6 3.6737 4.2100 4.7427 19 1 3.0223 3.7462 5.4834 20 6 3.2970 5.6835 4.5750 21 7 1.8502 5.7979 4.3755 22 6 1.2823 7.0271 4.1711 23 1 1.9010 7.9122 4.1574 24 6 -0.0887 7.1356 3.9825 25 7 -0.6346 8.3172 3.7866 26 14 -1.1588 5.6048 4.0070 27 1 -1.6208 5.3459 5.3943 28 1 -2.3350 5.8089 3.1236 29 1 -0.3716 4.4426 3.5224 30 6 2.2648 2.0783 1.1947 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0835 1.5640 -2.1272 37 1 4.3455 5.3547 -0.1943 38 1 3.3538 1.4865 3.9793 39 1 3.9116 1.7910 2.3154 40 1 5.7506 0.9927 3.8449 41 1 6.0729 2.5971 3.1437 42 1 7.6462 3.0596 5.0469 43 1 7.0665 2.9352 6.7254 44 1 7.2820 1.4642 5.7471 45 1 5.7726 4.6440 4.5062 46 1 5.2319 4.5291 6.1987 47 1 3.5854 6.2363 5.4691 48 1 3.8167 6.0952 3.7099 49 1 1.2945 5.0030 4.3881 50 1 -1.5925 8.3930 3.6545 51 1 2.0901 1.5864 2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689103798.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:34 Heat of formation + Delta-G solvation = -17.325183 kcal Electronic energy + Delta-G solvation = -32960.473785 eV Core-core repulsion = 28860.875729 eV Total energy + Delta-G solvation = -4099.598056 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.23817 -40.92072 -38.72355 -38.21592 -36.64326 -35.27508 -34.97670 -34.16384 -32.84908 -31.85792 -30.12378 -29.27450 -27.34336 -25.88138 -25.18161 -24.21648 -24.04665 -23.56913 -22.29584 -21.13759 -20.48980 -19.80448 -19.42821 -18.26211 -17.88027 -17.18717 -16.77513 -16.70195 -16.04020 -15.91276 -15.65898 -15.44427 -15.42318 -14.86605 -14.81182 -14.74884 -14.62494 -14.37964 -14.20144 -14.06628 -13.84999 -13.73092 -13.52247 -13.06063 -12.93387 -12.88722 -12.85627 -12.71222 -12.55897 -12.29776 -12.25576 -12.06322 -11.86632 -11.84541 -11.75177 -11.38864 -11.27796 -10.98149 -10.76128 -10.67661 -9.95936 -9.77742 -9.54459 -8.95439 -7.96756 -5.20442 -0.36553 0.01104 1.22955 1.31523 1.36592 1.89523 1.97418 2.47903 2.48662 2.66955 3.34284 3.39741 3.58416 3.63365 3.71604 3.80557 3.83358 3.87161 4.01605 4.13185 4.24891 4.25949 4.28502 4.31732 4.48545 4.50054 4.53092 4.62167 4.71917 4.77964 4.80763 4.84546 4.90482 4.92245 4.92911 5.00367 5.11563 5.12013 5.13025 5.22202 5.31777 5.32557 5.37343 5.43082 5.49597 5.56738 5.75923 5.80732 6.25950 6.44895 6.55896 6.80357 7.14501 7.42618 7.92563 8.10865 9.27400 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006915 B = 0.005869 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4048.472857 B = 4770.032412 C = 7047.993860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 C -0.140 4.140 4 C 0.138 3.862 5 N -0.526 5.526 6 C 0.328 3.672 7 O -0.486 6.486 8 C -0.202 4.202 9 C 0.521 3.479 10 O -0.488 6.488 11 N -0.607 5.607 12 C 0.093 3.907 13 C -0.121 4.121 14 C -0.087 4.087 15 H 0.082 0.918 16 C -0.141 4.141 17 C -0.113 4.113 18 C 0.147 3.853 19 H 0.076 0.924 20 C 0.162 3.838 21 N -0.724 5.724 22 C -0.185 4.185 23 H 0.044 0.956 24 C -0.079 4.079 25 N -0.996 5.996 26 Si 0.957 3.043 27 H -0.271 1.271 28 H -0.302 1.302 29 H -0.270 1.270 30 C -0.036 4.036 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.196 0.804 37 H 0.410 0.590 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.082 0.918 47 H 0.017 0.983 48 H 0.032 0.968 49 H 0.355 0.645 50 H 0.252 0.748 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.132 -29.081 -3.576 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 C -0.142 4.142 4 C -0.020 4.020 5 N -0.245 5.245 6 C 0.150 3.850 7 O -0.294 6.294 8 C -0.208 4.208 9 C 0.306 3.694 10 O -0.361 6.361 11 N -0.343 5.343 12 C -0.028 4.028 13 C -0.159 4.159 14 C -0.105 4.105 15 H 0.100 0.900 16 C -0.198 4.198 17 C -0.152 4.152 18 C 0.044 3.956 19 H 0.094 0.906 20 C 0.036 3.964 21 N -0.368 5.368 22 C -0.316 4.316 23 H 0.062 0.938 24 C -0.268 4.268 25 N -0.650 5.650 26 Si 0.786 3.214 27 H -0.197 1.197 28 H -0.230 1.230 29 H -0.196 1.196 30 C -0.061 4.061 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.213 0.787 37 H 0.270 0.730 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.100 0.900 47 H 0.035 0.965 48 H 0.050 0.950 49 H 0.188 0.812 50 H 0.060 0.940 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 14.621 -27.565 -4.306 31.499 hybrid contribution -0.778 0.175 0.456 0.918 sum 13.843 -27.391 -3.850 30.931 Atomic orbital electron populations 1.21825 0.94947 1.02912 1.01426 1.20551 0.95586 0.88868 1.05708 1.21225 1.00446 1.00118 0.92437 1.23264 0.91184 0.87783 0.99745 1.67294 1.15881 1.10194 1.31121 1.19349 0.94272 0.84155 0.87264 1.84845 1.28592 1.20461 1.95530 1.21245 1.08851 0.96590 0.94151 1.18401 0.79822 0.87342 0.83792 1.91242 1.48363 1.15487 1.80963 1.47924 1.62412 1.14411 1.09602 1.22349 0.96485 0.80643 1.03367 1.21966 0.94969 1.02808 0.96199 1.21107 0.98240 0.94040 0.97131 0.89975 1.21769 0.94654 1.02452 1.00960 1.21924 0.92984 0.98441 1.01864 1.21443 0.98171 0.91517 0.84470 0.90582 1.20977 0.84284 0.94260 0.96867 1.42478 1.03843 1.03802 1.86630 1.18885 0.90802 0.85920 1.36041 0.93832 1.25356 0.98025 0.99182 1.04278 1.69892 1.10603 1.24003 1.60489 0.85348 0.78083 0.80317 0.77624 1.19682 1.22980 1.19557 1.21994 0.92591 0.90858 1.00675 0.94275 0.93079 0.90020 0.87748 0.88608 0.78701 0.73030 0.89450 0.88637 0.87847 0.92568 0.93210 0.92492 0.91116 0.92450 0.89954 0.96484 0.95009 0.81221 0.93974 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.90 71.98 0.71 -1.10 16 2 C -0.07 -0.63 6.08 29.85 0.18 -0.45 16 3 C -0.14 -2.44 5.14 -19.81 -0.10 -2.54 16 4 C 0.14 2.81 10.84 84.71 0.92 3.73 16 5 N -0.53 -15.60 10.37 -307.98 -3.19 -18.80 16 6 C 0.33 11.18 7.74 85.13 0.66 11.84 16 7 O -0.49 -18.23 12.28 -71.37 -0.88 -19.10 16 8 C -0.20 -6.38 5.22 -19.91 -0.10 -6.49 16 9 C 0.52 19.31 6.79 86.69 0.59 19.90 16 10 O -0.49 -24.24 9.76 11.94 0.12 -24.12 16 11 N -0.61 -17.07 2.97 -798.78 -2.37 -19.44 16 12 C 0.09 1.56 4.86 86.36 0.42 1.98 16 13 C -0.12 -1.59 5.36 30.67 0.16 -1.43 16 14 C -0.09 -1.26 2.68 -10.77 -0.03 -1.29 16 15 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 16 C -0.14 -1.66 9.19 71.98 0.66 -1.00 16 17 C -0.11 -2.47 4.63 30.67 0.14 -2.33 16 18 C 0.15 4.41 2.91 44.98 0.13 4.54 16 19 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 20 C 0.16 6.96 4.87 86.38 0.42 7.38 16 21 N -0.72 -38.23 3.14 -343.45 -1.08 -39.31 16 22 C -0.18 -11.92 9.91 84.04 0.83 -11.09 16 23 H 0.04 3.11 8.06 -2.91 -0.02 3.09 16 24 C -0.08 -5.25 5.50 84.86 0.47 -4.78 16 25 N -1.00 -70.85 13.97 21.65 0.30 -70.55 16 26 Si 0.96 51.81 27.74 68.60 1.90 53.72 16 27 H -0.27 -13.72 7.11 99.48 0.71 -13.02 16 28 H -0.30 -16.63 7.11 99.48 0.71 -15.93 16 29 H -0.27 -13.73 6.52 99.48 0.65 -13.08 16 30 C -0.04 -0.79 7.16 22.72 0.16 -0.63 16 31 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 0.47 8.09 -2.39 -0.02 0.45 16 35 H 0.10 0.55 8.09 -2.39 -0.02 0.53 16 36 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.41 10.99 9.06 -74.06 -0.67 10.32 16 38 H 0.09 1.13 8.09 -2.39 -0.02 1.11 16 39 H 0.10 1.46 4.62 -2.39 -0.01 1.45 16 40 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.02 0.75 8.11 -2.39 -0.02 0.73 16 48 H 0.03 1.55 6.17 -2.39 -0.01 1.54 16 49 H 0.36 18.22 5.33 -92.71 -0.49 17.73 16 50 H 0.25 17.06 8.31 -92.71 -0.77 16.29 16 51 H 0.16 2.85 6.42 -2.91 -0.02 2.83 16 Total: -1.00 -94.04 395.89 0.75 -93.29 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.28 Total: 28.06 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.23 Total: 16.26 kcal Atomic # 7 Polarization: -141.75 SS G_CDS: -6.35 Total: -148.10 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.76 Total: -43.23 kcal Atomic # 14 Polarization: 51.81 SS G_CDS: 1.90 Total: 53.72 kcal Total: -94.04 0.75 -93.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689103798.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.967 kcal (2) G-P(sol) polarization free energy of solvation -94.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds