Wall clock time and date at job start Wed Apr 1 2020 04:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.46860 * 2 1 4 4 C 1.42906 * 114.00003 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.30447 * 27.82458 * 4 3 2 6 6 C 1.54381 * 110.34414 * 265.53442 * 4 3 2 7 7 N 1.48142 * 104.62087 * 217.25942 * 6 4 3 8 8 C 1.34770 * 127.84256 * 219.58665 * 7 6 4 9 9 O 1.21519 * 120.00185 * 174.62425 * 8 7 6 10 10 C 1.48174 * 119.99992 * 354.61744 * 8 7 6 11 11 N 1.32746 * 119.72063 * 353.89671 * 10 8 7 12 12 C 1.31495 * 121.64121 * 179.70531 * 11 10 8 13 13 C 1.38603 * 120.90099 * 0.56916 * 12 11 10 14 14 C 1.38587 * 119.35067 * 359.71935 * 13 12 11 15 15 C 1.38634 * 118.48450 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.46292 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47575 * 260.50953 * 16 15 14 18 18 C 1.48150 * 104.31870 * 39.58644 * 7 6 4 19 19 C 1.54284 * 110.34389 * 149.99581 * 4 3 2 20 20 H 1.09003 * 110.34143 * 359.89416 * 19 4 3 21 21 C 1.53006 * 110.34430 * 237.74401 * 19 4 3 22 22 N 1.46495 * 109.47216 * 175.00107 * 21 19 4 23 23 C 1.36938 * 120.00355 * 180.02562 * 22 21 19 24 24 H 1.08003 * 119.99153 * 359.97438 * 23 22 21 25 25 C 1.38801 * 120.00266 * 180.02562 * 23 22 21 26 26 N 1.31621 * 120.00452 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00095 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47334 * 59.99489 * 27 25 23 29 29 H 1.48500 * 109.47569 * 179.97438 * 27 25 23 30 30 H 1.48506 * 109.47091 * 299.99863 * 27 25 23 31 31 H 1.08991 * 109.46753 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47218 * 300.00142 * 1 2 3 33 33 H 1.08999 * 109.46863 * 60.00168 * 1 2 3 34 34 H 1.08999 * 109.47218 * 239.99858 * 2 1 3 35 35 H 1.09004 * 109.47353 * 119.99063 * 2 1 3 36 36 H 1.09005 * 110.40651 * 336.04675 * 6 4 3 37 37 H 1.09002 * 110.40734 * 98.47390 * 6 4 3 38 38 H 1.08004 * 119.54919 * 180.30599 * 12 11 10 39 39 H 1.07995 * 120.32417 * 179.74198 * 13 12 11 40 40 H 1.07992 * 120.75367 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47710 * 20.51280 * 16 15 14 42 42 H 1.09004 * 109.47020 * 140.51384 * 16 15 14 43 43 H 1.09001 * 109.47096 * 60.00241 * 17 16 15 44 44 H 1.08999 * 109.47804 * 180.02562 * 17 16 15 45 45 H 1.08996 * 109.46966 * 300.00591 * 17 16 15 46 46 H 1.09009 * 110.40356 * 201.63027 * 18 7 6 47 47 H 1.08999 * 110.40800 * 79.20296 * 18 7 6 48 48 H 1.08995 * 109.46853 * 295.00038 * 21 19 4 49 49 H 1.08994 * 109.47048 * 54.99993 * 21 19 4 50 50 H 0.97004 * 120.00057 * 359.97438 * 22 21 19 51 51 H 0.96996 * 120.00541 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8796 0.5888 -0.4763 6 6 3.9564 1.6152 1.4439 7 7 5.0844 2.5689 1.3308 8 6 6.2668 2.5314 1.9764 9 8 7.1342 3.3373 1.7031 10 6 6.5091 1.5074 3.0197 11 7 5.5195 0.7085 3.4001 12 6 5.6940 -0.2166 4.3181 13 6 6.9238 -0.3845 4.9348 14 6 7.9830 0.4322 4.5717 15 6 7.7716 1.3947 3.5965 16 6 8.8921 2.3063 3.1672 17 6 8.7493 3.6568 3.8718 18 6 4.6177 3.5733 0.3468 19 6 3.8669 2.7513 -0.7228 20 1 2.9946 3.2985 -1.0802 21 6 4.7995 2.4185 -1.8893 22 7 5.1059 3.6422 -2.6341 23 6 5.9276 3.5902 -3.7283 24 1 6.3501 2.6470 -4.0419 25 6 6.2183 4.7498 -4.4336 26 7 5.7039 5.8993 -4.0511 27 14 7.3398 4.6790 -5.9258 28 1 6.7491 3.7766 -6.9467 29 1 7.4899 6.0413 -6.4974 30 1 8.6717 4.1625 -5.5200 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8901 36 1 3.1783 2.0216 2.0901 37 1 4.3064 0.6562 1.8260 38 1 4.8665 -0.8515 4.5985 39 1 7.0556 -1.1445 5.6906 40 1 8.9510 0.3209 5.0371 41 1 9.8487 1.8568 3.4336 42 1 8.8477 2.4532 2.0880 43 1 8.7937 3.5100 4.9510 44 1 9.5595 4.3164 3.5610 45 1 7.7928 4.1064 3.6054 46 1 5.4667 4.0917 -0.0989 47 1 3.9430 4.2856 0.8217 48 1 5.7231 1.9866 -1.5042 49 1 4.3121 1.7027 -2.5512 50 1 4.7261 4.4893 -2.3526 51 1 5.9068 6.7096 -4.5442 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691323792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:49 Heat of formation + Delta-G solvation = -40.888569 kcal Electronic energy + Delta-G solvation = -31541.660479 eV Core-core repulsion = 27441.040637 eV Total energy + Delta-G solvation = -4100.619841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98628 -40.68447 -39.37581 -37.79524 -36.51316 -35.44899 -33.94896 -33.11980 -32.40887 -31.26996 -30.61700 -29.31957 -27.57783 -25.98266 -25.17019 -24.80208 -23.88030 -23.12200 -22.50318 -21.38983 -20.89840 -19.31612 -18.58541 -18.10080 -17.74625 -17.04418 -16.84472 -16.59951 -16.57564 -16.25503 -15.67275 -15.57591 -15.44514 -15.19729 -14.85708 -14.78200 -14.62461 -14.46047 -14.13279 -14.03555 -13.85798 -13.70509 -13.22430 -13.12888 -13.03447 -12.98557 -12.84857 -12.72734 -12.42970 -12.29207 -12.25785 -12.20515 -12.01087 -11.93090 -11.74337 -11.62994 -11.03012 -10.97629 -10.76819 -10.65904 -10.18376 -10.09676 -9.67145 -9.05148 -7.97344 -5.27394 -0.34591 0.25234 1.43585 1.47986 1.53941 1.69324 1.75959 2.51364 2.68226 2.83452 3.04009 3.34966 3.46119 3.57162 3.66257 3.81685 3.83630 3.92130 4.02659 4.05923 4.22632 4.28776 4.30855 4.35265 4.42261 4.43248 4.49858 4.52189 4.55535 4.58201 4.65527 4.76885 4.78471 4.79140 4.85803 4.95626 4.99003 5.04166 5.05989 5.11793 5.13040 5.14071 5.25717 5.34476 5.37621 5.43452 5.44497 5.69867 6.23558 6.30239 6.44602 6.72022 7.06924 7.30101 8.02870 8.28233 9.25934 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007760 B = 0.003719 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3607.188377 B = 7527.318513 C =10408.809430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.388 6.388 4 C 0.093 3.907 5 H 0.079 0.921 6 C 0.098 3.902 7 N -0.603 5.603 8 C 0.572 3.428 9 O -0.554 6.554 10 C 0.053 3.947 11 N -0.468 5.468 12 C 0.083 3.917 13 C -0.127 4.127 14 C -0.082 4.082 15 C -0.082 4.082 16 C -0.085 4.085 17 C -0.129 4.129 18 C 0.116 3.884 19 C -0.099 4.099 20 H 0.094 0.906 21 C 0.171 3.829 22 N -0.741 5.741 23 C -0.252 4.252 24 H 0.072 0.928 25 C -0.072 4.072 26 N -0.967 5.967 27 Si 0.976 3.024 28 H -0.274 1.274 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.197 0.803 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.033 0.967 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.006 0.994 49 H 0.025 0.975 50 H 0.375 0.625 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.168 -19.192 23.795 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.307 6.307 4 C 0.033 3.967 5 H 0.097 0.903 6 C -0.025 4.025 7 N -0.335 5.335 8 C 0.361 3.639 9 O -0.433 6.433 10 C -0.083 4.083 11 N -0.180 5.180 12 C -0.077 4.077 13 C -0.147 4.147 14 C -0.108 4.108 15 C -0.085 4.085 16 C -0.123 4.123 17 C -0.187 4.187 18 C -0.007 4.007 19 C -0.118 4.118 20 H 0.112 0.888 21 C 0.044 3.956 22 N -0.384 5.384 23 C -0.383 4.383 24 H 0.090 0.910 25 C -0.265 4.265 26 N -0.617 5.617 27 Si 0.804 3.196 28 H -0.200 1.200 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.139 0.861 38 H 0.214 0.786 39 H 0.200 0.800 40 H 0.189 0.811 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.101 0.899 48 H 0.024 0.976 49 H 0.043 0.957 50 H 0.207 0.793 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.462 -18.556 23.151 29.871 hybrid contribution 1.324 0.731 -0.867 1.743 sum -2.138 -17.825 22.284 28.616 Atomic orbital electron populations 1.21754 0.92678 1.03418 1.02630 1.22795 0.96483 0.82679 1.01061 1.87949 1.19425 1.28400 1.94904 1.22872 0.81851 0.97006 0.94977 0.90332 1.23156 0.87799 0.95519 0.95995 1.48703 1.15095 1.28016 1.41735 1.18128 0.80324 0.84207 0.81220 1.90779 1.43176 1.42482 1.66842 1.20593 0.91880 0.97405 0.98378 1.67613 1.32124 1.04609 1.13647 1.23545 0.98733 0.94272 0.91166 1.22846 0.92662 0.99287 0.99880 1.21938 1.01812 0.92688 0.94341 1.21045 0.94537 0.97100 0.95804 1.20641 0.95591 0.94591 1.01436 1.21557 1.01469 0.95982 0.99650 1.22302 0.98166 0.91416 0.88789 1.22244 0.98258 0.96931 0.94383 0.88790 1.20660 0.94740 0.89051 0.91102 1.42488 1.57692 1.05836 1.32341 1.19552 1.20802 0.94060 1.03910 0.90996 1.25590 1.02861 0.95093 1.02919 1.69812 1.50019 0.98560 1.43329 0.85192 0.78703 0.76441 0.79294 1.19973 1.21758 1.20692 0.88914 0.91825 0.92958 0.93199 0.91448 0.89759 0.86134 0.78627 0.79974 0.81140 0.88965 0.91728 0.91634 0.92386 0.94743 0.92250 0.89929 0.97574 0.95721 0.79271 0.93869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.28 71.98 0.74 -1.60 16 2 C 0.05 0.88 6.50 71.98 0.47 1.34 16 3 O -0.39 -10.32 9.95 -148.98 -1.48 -11.80 16 4 C 0.09 2.62 3.20 31.50 0.10 2.73 16 5 H 0.08 2.15 7.38 -2.39 -0.02 2.13 16 6 C 0.10 2.59 6.02 86.53 0.52 3.12 16 7 N -0.60 -20.31 3.32 -810.99 -2.69 -23.00 16 8 C 0.57 20.33 7.74 86.88 0.67 21.00 16 9 O -0.55 -23.29 11.71 -3.77 -0.04 -23.33 16 10 C 0.05 1.46 6.70 41.89 0.28 1.74 16 11 N -0.47 -10.21 6.82 -184.91 -1.26 -11.47 16 12 C 0.08 1.07 11.18 84.83 0.95 2.02 16 13 C -0.13 -1.18 10.11 22.44 0.23 -0.95 16 14 C -0.08 -1.11 9.82 22.45 0.22 -0.89 16 15 C -0.08 -1.86 5.18 -19.52 -0.10 -1.96 16 16 C -0.08 -2.11 5.34 29.85 0.16 -1.95 16 17 C -0.13 -3.27 9.39 71.98 0.68 -2.60 16 18 C 0.12 4.35 6.49 86.53 0.56 4.91 16 19 C -0.10 -3.56 2.90 -9.89 -0.03 -3.59 16 20 H 0.09 3.53 7.98 -2.39 -0.02 3.51 16 21 C 0.17 7.56 5.37 86.38 0.46 8.03 16 22 N -0.74 -40.64 5.21 -343.47 -1.79 -42.43 16 23 C -0.25 -15.02 9.99 84.03 0.84 -14.18 16 24 H 0.07 4.14 7.83 -2.91 -0.02 4.11 16 25 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 26 N -0.97 -61.89 13.06 21.65 0.28 -61.61 16 27 Si 0.98 48.35 29.55 68.60 2.03 50.38 16 28 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 29 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 30 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.94 8.10 -2.39 -0.02 0.93 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.08 2.12 8.08 -2.38 -0.02 2.11 16 37 H 0.12 2.86 5.66 -2.39 -0.01 2.85 16 38 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 40 H 0.17 1.21 8.06 -2.91 -0.02 1.18 16 41 H 0.09 1.68 8.04 -2.38 -0.02 1.66 16 42 H 0.06 2.13 6.07 -2.38 -0.01 2.11 16 43 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.03 1.08 6.39 -2.39 -0.02 1.07 16 46 H 0.06 2.75 7.27 -2.38 -0.02 2.73 16 47 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 48 H 0.01 0.30 8.13 -2.39 -0.02 0.28 16 49 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.38 21.69 7.61 -92.71 -0.71 20.99 16 51 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -79.15 408.83 2.48 -76.67 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 0.22 Total: 33.33 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 7.22 Total: 13.26 kcal Atomic # 7 Polarization: -133.06 SS G_CDS: -5.45 Total: -138.51 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.53 Total: -35.13 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -79.15 2.48 -76.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691323792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.781 kcal (2) G-P(sol) polarization free energy of solvation -79.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds