Wall clock time and date at job start Wed Apr 1 2020 04:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47223 * 2 1 4 4 C 1.38362 * 120.27057 * 270.25274 * 3 2 1 5 5 N 1.31875 * 121.17992 * 180.28794 * 4 3 2 6 6 C 1.32231 * 121.80558 * 359.71714 * 5 4 3 7 7 O 1.35422 * 119.80345 * 179.97438 * 6 5 4 8 8 C 1.40280 * 120.40093 * 0.02562 * 6 5 4 9 9 C 1.47524 * 120.60037 * 179.97438 * 8 6 5 10 10 O 1.21586 * 120.00104 * 306.86053 * 9 8 6 11 11 N 1.34782 * 119.99692 * 126.85691 * 9 8 6 12 12 C 1.46923 * 120.63348 * 3.62794 * 11 9 8 13 13 C 1.52766 * 109.00650 * 233.58702 * 12 11 9 14 14 C 1.53038 * 109.37981 * 305.58508 * 13 12 11 15 15 C 1.53036 * 109.54177 * 61.23939 * 14 13 12 16 16 H 1.09005 * 109.51915 * 58.60269 * 15 14 13 17 17 C 1.52998 * 109.50276 * 178.68110 * 15 14 13 18 18 C 1.52994 * 109.47560 * 184.84055 * 17 15 14 19 19 N 1.46500 * 109.47461 * 180.02562 * 18 17 15 20 20 C 1.36932 * 120.00406 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99768 * 359.97438 * 20 19 18 22 22 C 1.38808 * 120.00477 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99712 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00410 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46845 * 359.97438 * 24 22 20 26 26 H 1.48489 * 109.47241 * 119.99674 * 24 22 20 27 27 H 1.48504 * 109.46873 * 240.00093 * 24 22 20 28 28 C 1.46929 * 120.62612 * 183.90689 * 11 9 8 29 29 C 1.38332 * 120.26829 * 89.99860 * 3 2 1 30 30 H 1.08998 * 109.46843 * 60.00150 * 1 2 3 31 31 H 1.09007 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46809 * 299.99894 * 1 2 3 33 33 H 1.09000 * 109.47000 * 239.99598 * 2 1 3 34 34 H 1.09003 * 109.47370 * 120.00330 * 2 1 3 35 35 H 1.08003 * 119.40662 * 0.02562 * 4 3 2 36 36 H 0.96701 * 114.00706 * 270.02062 * 7 6 5 37 37 H 1.09004 * 109.58638 * 353.41598 * 12 11 9 38 38 H 1.08993 * 109.59012 * 113.83923 * 12 11 9 39 39 H 1.08998 * 109.56175 * 185.55319 * 13 12 11 40 40 H 1.08997 * 109.39155 * 65.51030 * 13 12 11 41 41 H 1.09005 * 109.45956 * 301.21824 * 14 13 12 42 42 H 1.09000 * 109.46188 * 181.26653 * 14 13 12 43 43 H 1.09001 * 109.46836 * 304.84755 * 17 15 14 44 44 H 1.09007 * 109.46835 * 64.83742 * 17 15 14 45 45 H 1.09000 * 109.47189 * 300.00543 * 18 17 15 46 46 H 1.09002 * 109.47057 * 60.00380 * 18 17 15 47 47 H 0.97000 * 119.99550 * 359.97438 * 19 18 17 48 48 H 0.96997 * 119.99557 * 179.97438 * 23 22 20 49 49 H 1.09008 * 109.58181 * 246.15258 * 28 11 9 50 50 H 1.08996 * 109.58711 * 6.58086 * 28 11 9 51 51 H 1.07997 * 120.82680 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2599 2.0801 -1.1950 5 7 2.7047 3.3214 -1.2159 6 6 2.9479 3.9935 -0.1034 7 8 3.4046 5.2665 -0.1722 8 6 2.7368 3.3953 1.1478 9 6 3.0072 4.1408 2.3918 10 8 4.0906 4.6655 2.5628 11 7 2.0532 4.2404 3.3386 12 6 0.7678 3.5462 3.1821 13 6 -0.3663 4.5568 3.3442 14 6 -0.2060 5.2905 4.6777 15 6 1.1236 6.0481 4.6885 16 1 1.1473 6.7540 3.8582 17 6 1.2679 6.8077 6.0087 18 6 2.5380 7.6598 5.9707 19 7 2.6765 8.3867 7.2351 20 6 3.7455 9.2193 7.4328 21 1 4.4868 9.3398 6.6567 22 6 3.8770 9.9076 8.6310 23 7 2.9738 9.7603 9.5771 24 14 5.3357 11.0428 8.9009 25 1 6.2007 11.0328 7.6938 26 1 4.8491 12.4234 9.1502 27 1 6.1174 10.5741 10.0734 28 6 2.2767 5.0500 4.5442 29 6 2.2648 2.0782 1.1947 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0739 1.5676 -2.1272 36 1 4.3687 5.3380 -0.1941 37 1 0.7144 3.0951 2.1913 38 1 0.6754 2.7721 3.9438 39 1 -1.3239 4.0365 3.3281 40 1 -0.3294 5.2764 2.5264 41 1 -0.2188 4.5678 5.4936 42 1 -1.0271 5.9960 4.8050 43 1 0.4015 7.4532 6.1531 44 1 1.3321 6.0963 6.8321 45 1 3.4044 7.0143 5.8263 46 1 2.4738 8.3713 5.1474 47 1 2.0105 8.2787 7.9320 48 1 3.0660 10.2410 10.4145 49 1 2.3098 4.4009 5.4193 50 1 3.2186 5.5907 4.4518 51 1 2.0911 1.5859 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698682758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:55 Heat of formation + Delta-G solvation = -42.060297 kcal Electronic energy + Delta-G solvation = -30821.926071 eV Core-core repulsion = 26721.255419 eV Total energy + Delta-G solvation = -4100.670651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43239 -39.88518 -37.99784 -37.51095 -35.39367 -34.73617 -33.77250 -32.50692 -32.21739 -30.59955 -29.59566 -27.52791 -26.27861 -24.68689 -24.37598 -24.14396 -22.58043 -22.34453 -20.91138 -20.30682 -19.54264 -18.98009 -17.73825 -17.39363 -16.93743 -16.50846 -16.19925 -15.46087 -15.28739 -14.78775 -14.69855 -14.52473 -14.44670 -14.09981 -13.82724 -13.78269 -13.64448 -13.53274 -13.32505 -13.05267 -12.97872 -12.74777 -12.57358 -12.28743 -12.19081 -11.86099 -11.58503 -11.46587 -11.16088 -11.12858 -11.04289 -10.83305 -10.60589 -10.45951 -10.42418 -10.23416 -10.12149 -9.87960 -9.70427 -9.59958 -9.21716 -8.81210 -8.78184 -6.85504 -5.71227 -2.99238 0.28114 0.61256 2.38509 2.72954 3.03531 3.37079 3.47679 3.53402 3.56038 3.94936 4.13502 4.24803 4.32326 4.46914 4.50788 4.65325 4.69965 4.76547 4.77256 4.83911 4.91611 4.96248 5.09224 5.13215 5.19659 5.29460 5.32608 5.39122 5.41633 5.56996 5.59872 5.61159 5.65255 5.67134 5.69717 5.78145 5.88588 5.94307 5.98129 6.03938 6.21240 6.23712 6.34644 6.45770 6.49509 6.92482 6.95625 7.12224 7.17449 7.43295 7.77340 7.92612 8.48304 9.59212 10.17810 10.52547 11.51986 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.002197 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.993984 B =12739.078934 C =13739.043135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.151 4.151 4 C 0.144 3.856 5 N -0.499 5.499 6 C 0.355 3.645 7 O -0.472 6.472 8 C -0.187 4.187 9 C 0.570 3.430 10 O -0.524 6.524 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.135 4.135 14 C -0.115 4.115 15 C -0.096 4.096 16 H 0.075 0.925 17 C -0.118 4.118 18 C 0.150 3.850 19 N -0.734 5.734 20 C -0.235 4.235 21 H 0.071 0.929 22 C -0.017 4.017 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.115 3.885 29 C -0.032 4.032 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.164 0.836 36 H 0.411 0.589 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.021 0.979 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.071 0.929 50 H 0.101 0.899 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 -24.602 -21.815 34.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.153 4.153 4 C -0.014 4.014 5 N -0.217 5.217 6 C 0.176 3.824 7 O -0.281 6.281 8 C -0.194 4.194 9 C 0.357 3.643 10 O -0.400 6.400 11 N -0.333 5.333 12 C -0.024 4.024 13 C -0.173 4.173 14 C -0.153 4.153 15 C -0.116 4.116 16 H 0.093 0.907 17 C -0.156 4.156 18 C 0.023 3.977 19 N -0.378 5.378 20 C -0.366 4.366 21 H 0.089 0.911 22 C -0.213 4.213 23 N -0.585 5.585 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.006 4.006 29 C -0.058 4.058 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.181 0.819 36 H 0.271 0.729 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.038 0.962 46 H 0.035 0.965 47 H 0.216 0.784 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.120 0.880 51 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.497 -23.582 -22.505 33.686 hybrid contribution 0.809 0.235 1.217 1.480 sum -7.688 -23.347 -21.288 32.517 Atomic orbital electron populations 1.21790 0.94215 1.02249 1.02466 1.20474 0.96433 0.91037 1.03687 1.20857 1.02398 0.98513 0.93552 1.22630 0.92229 0.88698 0.97885 1.67312 1.14333 1.08827 1.31227 1.19062 0.92641 0.84511 0.86223 1.84665 1.28526 1.19516 1.95387 1.21073 1.07290 0.96173 0.94825 1.17835 0.84275 0.80034 0.82195 1.90825 1.23310 1.47172 1.78740 1.48047 1.15095 1.49308 1.20892 1.21895 0.83021 0.95114 1.02344 1.21847 0.97730 0.98692 0.99045 1.21595 0.97672 0.99389 0.96605 1.21469 0.93956 0.96705 0.99472 0.90685 1.21726 0.99801 0.98693 0.95401 1.20715 0.93961 0.93066 0.89980 1.42380 1.28826 1.52466 1.14144 1.19310 1.00733 1.17369 0.99213 0.91126 1.24746 0.98840 1.01050 0.96656 1.69677 1.35792 1.46543 1.06455 0.86108 0.82054 0.80457 0.77590 1.20516 1.21905 1.21894 1.21891 1.00570 0.92933 0.85195 1.21596 0.92914 0.92142 0.99131 0.92325 0.91899 0.92401 0.90259 0.90477 0.81906 0.72897 0.89853 0.90959 0.90673 0.91459 0.91594 0.91289 0.91478 0.91747 0.96171 0.96475 0.78373 0.93657 0.91050 0.88037 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.89 37.16 0.37 -0.10 16 2 C -0.08 -0.27 6.08 -27.88 -0.17 -0.44 16 3 C -0.15 -0.92 5.14 -104.54 -0.54 -1.46 16 4 C 0.14 1.04 10.84 -17.49 -0.19 0.85 16 5 N -0.50 -5.29 10.37 -12.98 -0.13 -5.43 16 6 C 0.36 4.15 7.76 -16.61 -0.13 4.02 16 7 O -0.47 -5.81 12.74 -21.87 -0.28 -6.09 16 8 C -0.19 -2.03 4.92 -104.69 -0.52 -2.55 16 9 C 0.57 7.69 6.90 -12.47 -0.09 7.60 16 10 O -0.52 -8.97 16.16 1.38 0.02 -8.95 16 11 N -0.60 -7.10 2.98 -174.26 -0.52 -7.62 16 12 C 0.10 0.82 5.50 -3.93 -0.02 0.80 16 13 C -0.13 -1.14 6.07 -26.83 -0.16 -1.30 16 14 C -0.11 -1.16 5.17 -26.69 -0.14 -1.30 16 15 C -0.10 -1.26 2.34 -90.51 -0.21 -1.47 16 16 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 17 C -0.12 -1.90 4.80 -26.73 -0.13 -2.03 16 18 C 0.15 3.16 6.02 -4.04 -0.02 3.14 16 19 N -0.73 -19.43 5.60 -59.91 -0.34 -19.76 16 20 C -0.23 -6.88 9.99 -15.06 -0.15 -7.03 16 21 H 0.07 2.03 7.83 -52.48 -0.41 1.62 16 22 C -0.02 -0.52 5.50 -17.43 -0.10 -0.62 16 23 N -0.94 -29.05 13.06 55.49 0.72 -28.33 16 24 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 C 0.12 1.56 5.32 -3.71 -0.02 1.54 16 29 C -0.03 -0.24 7.22 -38.89 -0.28 -0.52 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.15 8.14 -51.92 -0.42 -0.28 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 34 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 35 H 0.16 0.69 8.06 -52.48 -0.42 0.27 16 36 H 0.41 3.62 9.06 45.56 0.41 4.03 16 37 H 0.08 0.61 4.71 -51.93 -0.24 0.36 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 45 H 0.02 0.44 6.70 -51.93 -0.35 0.09 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.38 10.50 7.67 -40.82 -0.31 10.18 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 50 H 0.10 1.66 5.74 -51.93 -0.30 1.36 16 51 H 0.14 0.82 7.36 -52.49 -0.39 0.43 16 LS Contribution 408.71 15.07 6.16 6.16 Total: -1.00 -36.41 408.71 -9.36 -45.77 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.48 Total: 6.93 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.49 Total: -0.86 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -0.26 Total: -61.13 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.26 Total: -15.04 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.41 -9.36 -45.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698682758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.710 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds