Wall clock time and date at job start Wed Apr 1 2020 04:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47223 * 2 1 4 4 C 1.38362 * 120.27057 * 270.25274 * 3 2 1 5 5 N 1.31875 * 121.17992 * 180.28794 * 4 3 2 6 6 C 1.32231 * 121.80558 * 359.71714 * 5 4 3 7 7 O 1.35422 * 119.80345 * 179.97438 * 6 5 4 8 8 C 1.40280 * 120.40093 * 0.02562 * 6 5 4 9 9 C 1.47524 * 120.60037 * 179.97438 * 8 6 5 10 10 O 1.21586 * 120.00104 * 306.86053 * 9 8 6 11 11 N 1.34782 * 119.99692 * 126.85691 * 9 8 6 12 12 C 1.46923 * 120.63348 * 3.62794 * 11 9 8 13 13 C 1.52766 * 109.00650 * 233.58702 * 12 11 9 14 14 C 1.53038 * 109.37981 * 305.58508 * 13 12 11 15 15 C 1.53036 * 109.54177 * 61.23939 * 14 13 12 16 16 H 1.09005 * 109.51915 * 58.60269 * 15 14 13 17 17 C 1.52998 * 109.50276 * 178.68110 * 15 14 13 18 18 C 1.52994 * 109.47560 * 184.84055 * 17 15 14 19 19 N 1.46500 * 109.47461 * 180.02562 * 18 17 15 20 20 C 1.36932 * 120.00406 * 180.02562 * 19 18 17 21 21 H 1.08003 * 119.99768 * 359.97438 * 20 19 18 22 22 C 1.38808 * 120.00477 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99712 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00410 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46845 * 359.97438 * 24 22 20 26 26 H 1.48489 * 109.47241 * 119.99674 * 24 22 20 27 27 H 1.48504 * 109.46873 * 240.00093 * 24 22 20 28 28 C 1.46929 * 120.62612 * 183.90689 * 11 9 8 29 29 C 1.38332 * 120.26829 * 89.99860 * 3 2 1 30 30 H 1.08998 * 109.46843 * 60.00150 * 1 2 3 31 31 H 1.09007 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46809 * 299.99894 * 1 2 3 33 33 H 1.09000 * 109.47000 * 239.99598 * 2 1 3 34 34 H 1.09003 * 109.47370 * 120.00330 * 2 1 3 35 35 H 1.08003 * 119.40662 * 0.02562 * 4 3 2 36 36 H 0.96701 * 114.00706 * 270.02062 * 7 6 5 37 37 H 1.09004 * 109.58638 * 353.41598 * 12 11 9 38 38 H 1.08993 * 109.59012 * 113.83923 * 12 11 9 39 39 H 1.08998 * 109.56175 * 185.55319 * 13 12 11 40 40 H 1.08997 * 109.39155 * 65.51030 * 13 12 11 41 41 H 1.09005 * 109.45956 * 301.21824 * 14 13 12 42 42 H 1.09000 * 109.46188 * 181.26653 * 14 13 12 43 43 H 1.09001 * 109.46836 * 304.84755 * 17 15 14 44 44 H 1.09007 * 109.46835 * 64.83742 * 17 15 14 45 45 H 1.09000 * 109.47189 * 300.00543 * 18 17 15 46 46 H 1.09002 * 109.47057 * 60.00380 * 18 17 15 47 47 H 0.97000 * 119.99550 * 359.97438 * 19 18 17 48 48 H 0.96997 * 119.99557 * 179.97438 * 23 22 20 49 49 H 1.09008 * 109.58181 * 246.15258 * 28 11 9 50 50 H 1.08996 * 109.58711 * 6.58086 * 28 11 9 51 51 H 1.07997 * 120.82680 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2599 2.0801 -1.1950 5 7 2.7047 3.3214 -1.2159 6 6 2.9479 3.9935 -0.1034 7 8 3.4046 5.2665 -0.1722 8 6 2.7368 3.3953 1.1478 9 6 3.0072 4.1408 2.3918 10 8 4.0906 4.6655 2.5628 11 7 2.0532 4.2404 3.3386 12 6 0.7678 3.5462 3.1821 13 6 -0.3663 4.5568 3.3442 14 6 -0.2060 5.2905 4.6777 15 6 1.1236 6.0481 4.6885 16 1 1.1473 6.7540 3.8582 17 6 1.2679 6.8077 6.0087 18 6 2.5380 7.6598 5.9707 19 7 2.6765 8.3867 7.2351 20 6 3.7455 9.2193 7.4328 21 1 4.4868 9.3398 6.6567 22 6 3.8770 9.9076 8.6310 23 7 2.9738 9.7603 9.5771 24 14 5.3357 11.0428 8.9009 25 1 6.2007 11.0328 7.6938 26 1 4.8491 12.4234 9.1502 27 1 6.1174 10.5741 10.0734 28 6 2.2767 5.0500 4.5442 29 6 2.2648 2.0782 1.1947 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.0739 1.5676 -2.1272 36 1 4.3687 5.3380 -0.1941 37 1 0.7144 3.0951 2.1913 38 1 0.6754 2.7721 3.9438 39 1 -1.3239 4.0365 3.3281 40 1 -0.3294 5.2764 2.5264 41 1 -0.2188 4.5678 5.4936 42 1 -1.0271 5.9960 4.8050 43 1 0.4015 7.4532 6.1531 44 1 1.3321 6.0963 6.8321 45 1 3.4044 7.0143 5.8263 46 1 2.4738 8.3713 5.1474 47 1 2.0105 8.2787 7.9320 48 1 3.0660 10.2410 10.4145 49 1 2.3098 4.4009 5.4193 50 1 3.2186 5.5907 4.4518 51 1 2.0911 1.5859 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698682758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:54 Heat of formation + Delta-G solvation = -69.294868 kcal Electronic energy + Delta-G solvation = -30823.107050 eV Core-core repulsion = 26721.255419 eV Total energy + Delta-G solvation = -4101.851631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.21282 -40.76749 -38.96739 -38.39655 -37.00448 -35.29676 -35.12693 -33.66764 -33.14910 -32.27433 -30.11021 -29.05526 -27.16551 -25.96999 -25.16513 -25.03932 -24.03284 -22.95258 -22.22441 -21.38406 -20.41427 -19.75535 -19.18310 -18.48260 -18.16711 -17.39686 -17.02906 -16.73857 -16.25828 -16.19217 -15.60249 -15.50879 -15.35515 -15.27836 -14.87760 -14.75148 -14.63471 -14.42266 -14.30024 -14.22317 -13.98411 -13.81256 -13.44911 -13.09139 -13.00628 -12.89489 -12.86536 -12.61941 -12.38640 -12.29519 -12.12250 -12.01221 -11.94951 -11.81815 -11.77071 -11.61316 -11.33064 -11.24815 -10.96734 -10.79699 -10.47839 -9.88260 -9.72048 -9.04629 -7.99789 -5.29018 -0.41314 -0.01456 1.41868 1.43735 1.44861 1.55563 1.84787 2.34495 2.52344 2.67595 3.19432 3.33105 3.56403 3.65244 3.67889 3.78992 3.80375 3.84484 4.02063 4.03388 4.10842 4.23158 4.28873 4.38254 4.44592 4.49207 4.53060 4.56736 4.63416 4.68368 4.69286 4.79530 4.82214 4.83941 4.87820 4.93343 5.01250 5.07522 5.20149 5.21649 5.28868 5.33883 5.35047 5.38727 5.42628 5.45486 5.48501 5.53068 6.22715 6.23560 6.39338 6.75332 6.93924 7.29274 8.04013 8.29473 9.23795 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017628 B = 0.002197 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.993984 B =12739.078934 C =13739.043135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.133 4.133 4 C 0.142 3.858 5 N -0.522 5.522 6 C 0.330 3.670 7 O -0.495 6.495 8 C -0.201 4.201 9 C 0.564 3.436 10 O -0.576 6.576 11 N -0.598 5.598 12 C 0.094 3.906 13 C -0.130 4.130 14 C -0.110 4.110 15 C -0.086 4.086 16 H 0.056 0.944 17 C -0.103 4.103 18 C 0.150 3.850 19 N -0.746 5.746 20 C -0.250 4.250 21 H 0.068 0.932 22 C -0.075 4.075 23 N -0.967 5.967 24 Si 0.975 3.025 25 H -0.271 1.271 26 H -0.289 1.289 27 H -0.288 1.288 28 C 0.118 3.882 29 C -0.027 4.027 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.196 0.804 36 H 0.417 0.583 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.015 0.985 46 H 0.006 0.994 47 H 0.376 0.624 48 H 0.253 0.747 49 H 0.084 0.916 50 H 0.063 0.937 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.504 -27.614 -22.664 37.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.135 4.135 4 C -0.015 4.015 5 N -0.240 5.240 6 C 0.151 3.849 7 O -0.305 6.305 8 C -0.207 4.207 9 C 0.352 3.648 10 O -0.456 6.456 11 N -0.329 5.329 12 C -0.027 4.027 13 C -0.168 4.168 14 C -0.148 4.148 15 C -0.106 4.106 16 H 0.074 0.926 17 C -0.141 4.141 18 C 0.023 3.977 19 N -0.388 5.388 20 C -0.382 4.382 21 H 0.086 0.914 22 C -0.267 4.267 23 N -0.617 5.617 24 Si 0.803 3.197 25 H -0.195 1.195 26 H -0.215 1.215 27 H -0.215 1.215 28 C -0.004 4.004 29 C -0.052 4.052 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.212 0.788 36 H 0.278 0.722 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.033 0.967 46 H 0.024 0.976 47 H 0.208 0.792 48 H 0.062 0.938 49 H 0.102 0.898 50 H 0.081 0.919 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.189 -26.626 -23.387 36.874 hybrid contribution 1.290 1.078 1.395 2.184 sum -8.898 -25.549 -21.992 34.865 Atomic orbital electron populations 1.21800 0.93698 1.02941 1.02313 1.20571 0.96653 0.88911 1.05152 1.21174 1.00310 0.99615 0.92402 1.23282 0.90755 0.87654 0.99830 1.67326 1.15408 1.10376 1.30920 1.19223 0.94048 0.84569 0.87034 1.84614 1.29381 1.20940 1.95564 1.20884 1.09380 0.97454 0.93009 1.18324 0.83784 0.79623 0.83043 1.90786 1.25489 1.49497 1.79827 1.48132 1.16190 1.48732 1.19815 1.22225 0.80874 0.95409 1.04193 1.21838 0.99342 0.98414 0.97166 1.21571 0.95232 0.99597 0.98360 1.21339 0.96083 0.96336 0.96812 0.92555 1.21582 0.96899 0.98205 0.97441 1.20845 0.96496 0.92908 0.87421 1.42572 1.28026 1.52669 1.15582 1.19640 1.01420 1.17790 0.99328 0.91375 1.25591 1.01782 1.02862 0.96465 1.69816 1.37541 1.47591 1.06789 0.85057 0.78787 0.78200 0.77626 1.19546 1.21540 1.21507 1.21695 0.98924 0.93284 0.86540 1.21865 0.91924 0.90601 1.00845 0.92600 0.90827 0.92512 0.88582 0.89357 0.78763 0.72179 0.88473 0.88094 0.87311 0.93133 0.89999 0.90858 0.91400 0.91086 0.96727 0.97577 0.79191 0.93793 0.89818 0.91859 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.34 9.89 71.98 0.71 0.37 16 2 C -0.08 -0.20 6.08 29.85 0.18 -0.01 16 3 C -0.13 -1.22 5.14 -19.81 -0.10 -1.32 16 4 C 0.14 1.74 10.84 84.72 0.92 2.66 16 5 N -0.52 -10.84 10.37 -308.01 -3.19 -14.03 16 6 C 0.33 7.96 7.76 85.13 0.66 8.62 16 7 O -0.50 -13.32 12.74 -83.43 -1.06 -14.39 16 8 C -0.20 -4.34 4.92 -19.91 -0.10 -4.43 16 9 C 0.56 15.75 6.90 86.69 0.60 16.35 16 10 O -0.58 -21.26 16.16 -0.25 0.00 -21.27 16 11 N -0.60 -13.92 2.98 -823.50 -2.45 -16.37 16 12 C 0.09 1.30 5.50 86.22 0.47 1.77 16 13 C -0.13 -1.82 6.07 30.53 0.19 -1.64 16 14 C -0.11 -1.98 5.17 30.62 0.16 -1.82 16 15 C -0.09 -2.25 2.34 -10.72 -0.03 -2.28 16 16 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 17 C -0.10 -3.35 4.80 30.59 0.15 -3.20 16 18 C 0.15 6.57 6.02 86.38 0.52 7.09 16 19 N -0.75 -40.59 5.60 -343.46 -1.92 -42.52 16 20 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 21 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 22 C -0.07 -4.49 5.50 84.86 0.47 -4.02 16 23 N -0.97 -60.83 13.06 21.65 0.28 -60.55 16 24 Si 0.97 48.23 29.55 68.60 2.03 50.26 16 25 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 C 0.12 3.24 5.32 86.36 0.46 3.70 16 29 C -0.03 -0.34 7.22 22.72 0.16 -0.18 16 30 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.07 0.05 8.14 -2.38 -0.02 0.03 16 32 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.10 0.00 8.09 -2.39 -0.02 -0.02 16 34 H 0.09 0.11 8.09 -2.39 -0.02 0.09 16 35 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.42 8.65 9.06 -74.06 -0.67 7.98 16 37 H 0.10 1.11 4.71 -2.39 -0.01 1.10 16 38 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 45 H 0.01 0.67 6.70 -2.39 -0.02 0.65 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.38 21.15 7.67 -92.71 -0.71 20.44 16 48 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 49 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 50 H 0.06 2.24 5.74 -2.39 -0.01 2.22 16 51 H 0.17 1.31 7.36 -2.91 -0.02 1.29 16 Total: -1.00 -82.56 408.71 -0.50 -83.07 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.43 Total: 28.26 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.26 Total: 7.54 kcal Atomic # 7 Polarization: -126.18 SS G_CDS: -7.29 Total: -133.47 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.07 Total: -35.66 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -82.56 -0.50 -83.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698682758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.771 kcal (2) G-P(sol) polarization free energy of solvation -82.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds