Wall clock time and date at job start Wed Apr 1 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47177 * 2 1 4 4 N 1.46504 * 109.45658 * 300.38901 * 3 2 1 5 5 C 1.36928 * 120.00195 * 304.87921 * 4 3 2 6 6 H 1.08003 * 120.00305 * 354.98464 * 5 4 3 7 7 C 1.38816 * 120.00128 * 174.98203 * 5 4 3 8 8 N 1.31621 * 119.99689 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00077 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47011 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46840 * 120.00025 * 9 7 5 12 12 H 1.48500 * 109.46661 * 239.99796 * 9 7 5 13 13 C 1.53042 * 109.46398 * 180.42016 * 3 2 1 14 14 C 1.53190 * 109.31324 * 178.60351 * 13 3 2 15 15 N 1.46923 * 108.76904 * 54.65097 * 14 13 3 16 16 C 1.34771 * 120.62728 * 126.40644 * 15 14 13 17 17 O 1.21554 * 120.00283 * 7.99348 * 16 15 14 18 18 C 1.47837 * 119.99492 * 187.99146 * 16 15 14 19 19 N 1.32851 * 119.78500 * 7.91363 * 18 16 15 20 20 C 1.31380 * 121.69406 * 179.74705 * 19 18 16 21 21 C 1.38758 * 121.06944 * 0.53222 * 20 19 18 22 22 C 1.50694 * 120.28188 * 179.71755 * 21 20 19 23 23 C 1.38308 * 119.44495 * 359.73982 * 21 20 19 24 24 C 1.39345 * 118.43996 * 359.97438 * 23 21 20 25 25 O 1.35648 * 120.54419 * 180.02562 * 24 23 21 26 26 C 1.42895 * 116.99521 * 359.97438 * 25 24 23 27 27 C 1.46924 * 118.73834 * 306.38365 * 15 14 13 28 28 C 1.53043 * 109.46019 * 60.36091 * 3 2 1 29 29 H 1.09009 * 109.47017 * 184.85551 * 1 2 3 30 30 H 1.08993 * 109.47340 * 304.85785 * 1 2 3 31 31 H 1.08999 * 109.47083 * 64.86308 * 1 2 3 32 32 H 1.08997 * 109.47702 * 239.99878 * 2 1 3 33 33 H 1.09003 * 109.47508 * 119.99549 * 2 1 3 34 34 H 0.97004 * 119.99445 * 124.88320 * 4 3 2 35 35 H 0.96999 * 119.99809 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.49550 * 298.56535 * 13 3 2 37 37 H 1.08999 * 109.49815 * 58.65655 * 13 3 2 38 38 H 1.09002 * 109.59268 * 294.86088 * 14 13 3 39 39 H 1.09004 * 109.58277 * 174.43685 * 14 13 3 40 40 H 1.08001 * 119.46437 * 180.25010 * 20 19 18 41 41 H 1.09004 * 109.47041 * 270.02060 * 22 21 20 42 42 H 1.08999 * 109.47512 * 30.02162 * 22 21 20 43 43 H 1.09002 * 109.47544 * 150.02285 * 22 21 20 44 44 H 1.08006 * 120.78427 * 180.02562 * 23 21 20 45 45 H 1.09003 * 109.47310 * 60.00543 * 26 25 24 46 46 H 1.09007 * 109.46916 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.47704 * 300.00062 * 26 25 24 48 48 H 1.09004 * 109.58756 * 293.82217 * 27 15 14 49 49 H 1.08999 * 109.58665 * 173.39176 * 27 15 14 50 50 H 1.08993 * 109.49663 * 301.34276 * 28 3 2 51 51 H 1.09004 * 109.49335 * 61.44027 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5438 2.1355 -1.1916 5 6 1.7822 1.6149 -2.4354 6 1 2.4040 0.7386 -2.5440 7 6 1.2246 2.2135 -3.5569 8 7 0.4664 3.2812 -3.4246 9 14 1.5493 1.5029 -5.2537 10 1 2.4257 0.3104 -5.1315 11 1 0.2617 1.1095 -5.8803 12 1 2.2190 2.5245 -6.0982 13 6 3.5704 1.4423 -0.0106 14 6 4.0770 2.8876 -0.0458 15 7 3.4816 3.6247 1.0771 16 6 4.2608 4.2977 1.9468 17 8 5.4500 4.4212 1.7277 18 6 3.6690 4.8856 3.1673 19 7 2.4071 4.6169 3.4842 20 6 1.8451 5.1151 4.5622 21 6 2.5482 5.9561 5.4129 22 6 1.8841 6.5225 6.6413 23 6 3.8637 6.2705 5.1238 24 6 4.4399 5.7254 3.9781 25 8 5.7271 6.0049 3.6541 26 6 6.4440 6.8722 4.5349 27 6 2.0208 3.6145 1.2335 28 6 1.5371 2.1611 1.2542 29 1 -0.3633 -1.0241 0.0870 30 1 -0.3633 0.5873 0.8432 31 1 -0.3633 0.4365 -0.9303 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.0464 2.9632 -1.0993 35 1 0.0770 3.6997 -4.2083 36 1 3.9403 0.9487 0.8882 37 1 3.9280 0.9099 -0.8919 38 1 3.7840 3.3548 -0.9860 39 1 5.1631 2.8963 0.0461 40 1 0.8177 4.8696 4.7875 41 1 1.4099 7.4721 6.3928 42 1 1.1298 5.8231 7.0018 43 1 2.6321 6.6823 7.4179 44 1 4.4313 6.9226 5.7712 45 1 6.4822 6.4287 5.5299 46 1 7.4583 7.0122 4.1608 47 1 5.9389 7.8366 4.5860 48 1 1.5601 4.1411 0.3977 49 1 1.7501 4.1029 2.1696 50 1 0.4476 2.1404 1.2731 51 1 1.9265 1.6607 2.1409 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700220254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:08 Heat of formation + Delta-G solvation = -1.525325 kcal Electronic energy + Delta-G solvation = -32278.811084 eV Core-core repulsion = 28179.898161 eV Total energy + Delta-G solvation = -4098.912923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.24188 -39.43976 -38.46465 -37.69316 -34.70243 -33.95971 -32.45540 -31.21839 -30.65921 -29.85981 -28.99831 -28.32941 -27.41292 -24.96736 -23.70150 -23.65065 -22.70709 -22.50249 -21.34663 -19.88004 -18.25923 -17.79216 -17.54041 -16.93056 -16.88023 -16.18069 -15.66637 -15.00617 -14.90391 -14.58036 -14.42428 -14.32981 -14.06552 -13.88271 -13.70055 -13.40212 -13.36616 -13.18524 -12.93887 -12.85387 -12.58694 -12.43654 -12.15118 -11.84561 -11.70546 -11.67470 -11.34760 -11.13166 -11.04700 -10.82805 -10.58054 -10.49082 -10.28074 -10.13302 -9.86558 -9.83910 -9.77863 -9.57587 -9.38720 -8.77051 -8.62613 -8.54846 -7.91702 -6.81825 -5.67810 -2.94528 0.49095 0.97336 2.86978 2.91771 3.39719 3.48170 3.54731 3.56089 3.78839 4.11771 4.24437 4.44620 4.59861 4.65993 4.67357 4.77062 4.85074 5.07984 5.14493 5.17802 5.24528 5.46483 5.52648 5.55782 5.58652 5.60719 5.78640 5.79564 5.88398 5.93281 6.04857 6.08107 6.13264 6.23847 6.30961 6.37615 6.48815 6.60107 6.69681 6.75855 6.81892 6.84323 6.98811 7.01988 7.06636 7.14423 7.29997 7.35374 7.53893 7.82097 7.99984 8.51549 8.59665 9.62958 10.22037 10.57932 11.54948 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.003063 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.444800 B = 9139.959015 C = 9840.485027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.199 3.801 4 N -0.712 5.712 5 C -0.223 4.223 6 H 0.069 0.931 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.898 3.102 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.294 1.294 13 C -0.134 4.134 14 C 0.121 3.879 15 N -0.577 5.577 16 C 0.564 3.436 17 O -0.532 6.532 18 C 0.049 3.951 19 N -0.398 5.398 20 C 0.052 3.948 21 C -0.078 4.078 22 C -0.114 4.114 23 C -0.177 4.177 24 C 0.139 3.861 25 O -0.271 6.271 26 C 0.019 3.981 27 C 0.051 3.949 28 C -0.122 4.122 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.383 0.617 35 H 0.252 0.748 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.166 0.834 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.145 0.855 45 H 0.055 0.945 46 H 0.105 0.895 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.158 0.842 50 H 0.073 0.927 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.145 6.770 23.417 24.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.108 3.892 4 N -0.354 5.354 5 C -0.355 4.355 6 H 0.087 0.913 7 C -0.210 4.210 8 N -0.582 5.582 9 Si 0.730 3.270 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.222 1.222 13 C -0.175 4.175 14 C -0.001 4.001 15 N -0.308 5.308 16 C 0.350 3.650 17 O -0.409 6.409 18 C -0.089 4.089 19 N -0.109 5.109 20 C -0.108 4.108 21 C -0.080 4.080 22 C -0.171 4.171 23 C -0.203 4.203 24 C 0.089 3.911 25 O -0.180 6.180 26 C -0.076 4.076 27 C -0.072 4.072 28 C -0.160 4.160 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.218 0.782 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.183 0.817 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.162 0.838 45 H 0.074 0.926 46 H 0.123 0.877 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.173 0.827 50 H 0.091 0.909 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.520 6.120 22.386 23.644 hybrid contribution 0.335 0.484 -0.406 0.715 sum 4.856 6.604 21.981 23.459 Atomic orbital electron populations 1.21657 0.96190 0.99094 1.02699 1.21843 0.96262 0.98065 0.99839 1.19591 0.90860 0.91215 0.87548 1.42470 1.65663 1.27165 1.00090 1.19153 1.23599 1.08842 0.83864 0.91312 1.24669 1.00411 0.98401 0.97488 1.69666 1.37737 1.22413 1.28360 0.86237 0.77143 0.78111 0.85461 1.20722 1.22164 1.22171 1.22327 0.99071 0.95455 1.00614 1.21590 0.97400 0.92071 0.88992 1.47914 1.07931 1.48362 1.26560 1.17587 0.85918 0.79423 0.82083 1.90785 1.14885 1.59617 1.75628 1.20920 0.90006 1.00178 0.97794 1.67440 1.08300 1.20083 1.15032 1.22878 1.00991 0.96244 0.90659 1.20933 0.93610 0.95994 0.97447 1.20812 1.00850 1.01540 0.93941 1.21613 0.96523 1.04165 0.98012 1.19986 0.85357 0.93076 0.92715 1.86447 1.20068 1.62874 1.48630 1.23207 0.97396 0.92889 0.94128 1.23394 0.78262 0.98433 1.07078 1.22015 1.00819 0.95625 0.97541 0.95048 0.93808 0.90886 0.92177 0.94330 0.78184 0.93828 0.93616 0.91027 0.89783 0.90837 0.81685 0.90240 0.90484 0.91147 0.83784 0.92604 0.87664 0.92587 0.91943 0.82742 0.90859 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.46 37.16 0.35 -2.17 16 2 C -0.12 -2.24 4.73 -26.73 -0.13 -2.37 16 3 C 0.20 3.88 0.44 -131.77 -0.06 3.82 16 4 N -0.71 -16.74 3.49 -47.19 -0.16 -16.90 16 5 C -0.22 -5.87 8.59 -15.06 -0.13 -6.00 16 6 H 0.07 1.80 6.72 -52.48 -0.35 1.45 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 8 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 9 Si 0.90 22.45 29.55 -169.99 -5.02 17.42 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 C -0.13 -2.57 4.78 -26.61 -0.13 -2.69 16 14 C 0.12 2.42 6.15 -3.71 -0.02 2.39 16 15 N -0.58 -10.84 2.97 -173.88 -0.52 -11.36 16 16 C 0.56 10.63 7.64 -12.34 -0.09 10.54 16 17 O -0.53 -11.29 14.64 -16.48 -0.24 -11.53 16 18 C 0.05 0.76 6.64 -82.88 -0.55 0.21 16 19 N -0.40 -5.35 6.07 -9.71 -0.06 -5.40 16 20 C 0.05 0.51 10.85 -17.55 -0.19 0.32 16 21 C -0.08 -0.64 5.90 -104.41 -0.62 -1.25 16 22 C -0.11 -0.53 10.03 36.00 0.36 -0.16 16 23 C -0.18 -1.64 8.80 -39.14 -0.34 -1.98 16 24 C 0.14 1.84 6.70 -38.55 -0.26 1.58 16 25 O -0.27 -3.72 8.60 -40.44 -0.35 -4.06 16 26 C 0.02 0.15 9.83 101.05 0.99 1.14 16 27 C 0.05 0.89 5.93 -3.71 -0.02 0.86 16 28 C -0.12 -2.08 4.68 -26.61 -0.12 -2.21 16 29 H 0.03 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.04 0.73 6.16 -51.93 -0.32 0.41 16 31 H 0.07 1.57 7.65 -51.93 -0.40 1.17 16 32 H 0.06 1.21 7.13 -51.93 -0.37 0.84 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.38 9.78 6.34 -40.82 -0.26 9.52 16 35 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.43 7.50 -51.93 -0.39 1.04 16 38 H 0.08 1.90 7.74 -51.93 -0.40 1.50 16 39 H 0.07 1.46 7.06 -51.93 -0.37 1.10 16 40 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 43 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 44 H 0.14 0.89 6.46 -52.48 -0.34 0.55 16 45 H 0.06 0.33 7.70 -51.93 -0.40 -0.07 16 46 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 48 H 0.06 1.23 6.84 -51.93 -0.36 0.88 16 49 H 0.16 2.44 3.43 -101.11 -0.35 2.10 16 50 H 0.07 1.23 6.26 -51.93 -0.33 0.90 16 51 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -33.09 392.47 -8.72 -41.81 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -7.96 Total: 9.48 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.05 Total: 1.53 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.02 Total: -60.56 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.59 Total: -15.60 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.09 -8.72 -41.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700220254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.286 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds