Wall clock time and date at job start Wed Apr 1 2020 05:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47160 * 2 1 4 4 N 1.46507 * 109.45721 * 300.66499 * 3 2 1 5 5 C 1.36938 * 119.99828 * 304.79721 * 4 3 2 6 6 H 1.08000 * 120.00102 * 354.96841 * 5 4 3 7 7 C 1.38803 * 119.99755 * 174.97366 * 5 4 3 8 8 N 1.31618 * 120.00249 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99818 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47444 * 59.99573 * 9 7 5 11 11 H 1.48500 * 109.47080 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47242 * 299.99571 * 9 7 5 13 13 C 1.53038 * 109.46360 * 180.69189 * 3 2 1 14 14 C 1.53190 * 109.31514 * 178.60100 * 13 3 2 15 15 N 1.46924 * 108.76466 * 54.65001 * 14 13 3 16 16 C 1.34780 * 120.62815 * 126.40651 * 15 14 13 17 17 O 1.21613 * 120.00023 * 6.23229 * 16 15 14 18 18 C 1.47418 * 120.00219 * 186.22921 * 16 15 14 19 19 C 1.36097 * 126.45238 * 187.09490 * 18 16 15 20 20 O 1.34250 * 106.94856 * 180.02562 * 19 18 16 21 21 C 1.34054 * 108.23373 * 0.02562 * 20 19 18 22 22 C 1.50698 * 125.38203 * 179.97438 * 21 20 19 23 23 C 1.52999 * 109.47118 * 269.97789 * 22 21 20 24 24 C 1.53002 * 117.49570 * 243.74706 * 23 22 21 25 25 C 1.53001 * 117.49587 * 175.08965 * 23 22 21 26 26 N 1.29934 * 109.23460 * 359.72158 * 21 20 19 27 27 C 1.46921 * 118.74397 * 306.38535 * 15 14 13 28 28 C 1.53046 * 109.46141 * 60.63445 * 3 2 1 29 29 H 1.09005 * 109.47417 * 64.75910 * 1 2 3 30 30 H 1.09005 * 109.47220 * 184.75691 * 1 2 3 31 31 H 1.09003 * 109.47402 * 304.75335 * 1 2 3 32 32 H 1.08992 * 109.47740 * 239.99854 * 2 1 3 33 33 H 1.09001 * 109.46818 * 119.99527 * 2 1 3 34 34 H 0.97001 * 119.99716 * 124.80140 * 4 3 2 35 35 H 0.97004 * 119.99664 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.49622 * 298.56257 * 13 3 2 37 37 H 1.09000 * 109.49679 * 58.65572 * 13 3 2 38 38 H 1.08999 * 109.59772 * 294.86676 * 14 13 3 39 39 H 1.08999 * 109.58950 * 174.43575 * 14 13 3 40 40 H 1.07994 * 126.51819 * 0.03257 * 19 18 16 41 41 H 1.08997 * 109.47249 * 29.97785 * 22 21 20 42 42 H 1.08999 * 109.47002 * 149.97710 * 22 21 20 43 43 H 1.08998 * 115.55124 * 29.41335 * 23 22 21 44 44 H 1.09004 * 117.50126 * 0.02562 * 24 23 22 45 45 H 1.09000 * 117.49626 * 145.02083 * 24 23 22 46 46 H 1.09005 * 117.49522 * 214.97526 * 25 23 22 47 47 H 1.08992 * 117.50085 * 359.97038 * 25 23 22 48 48 H 1.08996 * 109.58967 * 293.82284 * 27 15 14 49 49 H 1.08997 * 109.58871 * 173.39233 * 27 15 14 50 50 H 1.09000 * 109.49275 * 301.33863 * 28 3 2 51 51 H 1.08995 * 109.49916 * 61.43260 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5384 2.1375 -1.1882 5 6 1.7727 1.6197 -2.4341 6 1 2.3953 0.7445 -2.5469 7 6 1.2100 2.2198 -3.5521 8 7 0.4508 3.2862 -3.4147 9 14 1.5289 1.5131 -5.2516 10 1 1.0329 0.1144 -5.3073 11 1 0.8196 2.3302 -6.2686 12 1 2.9875 1.5324 -5.5300 13 6 3.5702 1.4423 -0.0174 14 6 4.0767 2.8876 -0.0527 15 7 3.4864 3.6229 1.0740 16 6 4.2694 4.2946 1.9414 17 8 5.4637 4.3912 1.7333 18 6 3.6781 4.9123 3.1423 19 6 4.3129 5.7276 4.0281 20 8 3.4128 6.0622 4.9663 21 6 2.2509 5.4657 4.6645 22 6 0.9782 5.5796 5.4636 23 6 0.9347 4.4684 6.5144 24 6 -0.1813 3.4283 6.3967 25 6 -0.2292 4.4805 7.5075 26 7 2.3939 4.7781 3.5714 27 6 2.0263 3.6126 1.2371 28 6 1.5428 2.1591 1.2576 29 1 -0.3634 0.4382 -0.9296 30 1 -0.3634 -1.0242 0.0852 31 1 -0.3634 0.5858 0.8443 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.0404 2.9644 -1.0924 35 1 0.0573 3.7053 -4.1960 36 1 3.9442 0.9474 0.8789 37 1 3.9239 0.9113 -0.9012 38 1 3.7795 3.3564 -0.9908 39 1 5.1632 2.8964 0.0344 40 1 5.3442 6.0449 3.9844 41 1 0.9460 6.5498 5.9592 42 1 0.1210 5.4834 4.7972 43 1 1.9038 4.1277 6.8788 44 1 -0.8842 3.5355 5.5705 45 1 0.0536 2.4035 6.6842 46 1 -0.0258 4.1474 8.5253 47 1 -0.9635 5.2804 7.4125 48 1 1.5618 4.1404 0.4042 49 1 1.7598 4.0995 2.1751 50 1 0.4532 2.1384 1.2813 51 1 1.9359 1.6574 2.1417 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700222165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:10 Heat of formation + Delta-G solvation = 34.439450 kcal Electronic energy + Delta-G solvation = -31991.868007 eV Core-core repulsion = 27894.514634 eV Total energy + Delta-G solvation = -4097.353373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.61013 -39.80962 -37.99160 -37.85734 -35.24387 -34.49882 -32.51404 -32.08299 -30.67570 -29.95680 -29.01462 -28.14778 -25.44778 -23.95350 -23.39719 -22.84949 -22.69808 -22.13679 -21.35208 -20.78003 -19.57804 -18.31574 -17.37369 -17.00508 -16.94037 -16.68307 -16.06565 -15.60851 -15.02665 -14.62447 -14.49934 -14.40413 -14.00091 -13.85375 -13.77294 -13.58235 -13.26012 -13.15185 -13.13056 -12.74029 -12.45365 -12.13104 -11.94822 -11.84046 -11.54617 -11.37809 -11.27938 -11.12061 -10.83230 -10.76194 -10.73759 -10.57706 -10.45699 -10.38897 -10.20321 -10.10199 -9.96043 -9.73290 -9.51107 -9.16031 -9.07971 -8.81362 -8.11094 -6.87870 -5.72254 -2.99649 1.02765 1.88365 2.36800 3.22421 3.40404 3.44072 3.45850 3.51070 3.51533 3.68979 4.33564 4.50688 4.53550 4.62634 4.67583 4.72698 4.89959 5.14426 5.22043 5.32493 5.36933 5.42951 5.45664 5.48970 5.52400 5.59403 5.63979 5.71744 5.77762 5.80259 5.82953 5.90352 5.97447 6.05769 6.15466 6.23320 6.28498 6.39755 6.51598 6.60887 6.64604 6.71628 6.77282 6.90945 6.97106 7.04802 7.20936 7.25335 7.36730 7.76510 7.82556 8.38174 8.46876 9.58234 10.16213 10.52160 11.50242 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012635 B = 0.003129 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.520246 B = 8945.272484 C =10005.280067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.200 3.800 4 N -0.712 5.712 5 C -0.227 4.227 6 H 0.068 0.932 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.900 3.100 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.288 1.288 13 C -0.135 4.135 14 C 0.121 3.879 15 N -0.576 5.576 16 C 0.592 3.408 17 O -0.553 6.553 18 C -0.057 4.057 19 C 0.004 3.996 20 O -0.196 6.196 21 C 0.199 3.801 22 C 0.006 3.994 23 C -0.156 4.156 24 C -0.171 4.171 25 C -0.175 4.175 26 N -0.445 5.445 27 C 0.068 3.932 28 C -0.123 4.123 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.230 0.770 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.141 0.859 50 H 0.075 0.925 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 3.836 22.371 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.108 3.892 4 N -0.354 5.354 5 C -0.358 4.358 6 H 0.086 0.914 7 C -0.208 4.208 8 N -0.582 5.582 9 Si 0.731 3.269 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.215 1.215 13 C -0.175 4.175 14 C -0.001 4.001 15 N -0.305 5.305 16 C 0.378 3.622 17 O -0.433 6.433 18 C -0.176 4.176 19 C -0.069 4.069 20 O -0.083 6.083 21 C -0.009 4.009 22 C -0.032 4.032 23 C -0.175 4.175 24 C -0.207 4.207 25 C -0.212 4.212 26 N -0.175 5.175 27 C -0.055 4.055 28 C -0.161 4.161 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.218 0.782 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.246 0.754 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.086 0.914 49 H 0.157 0.843 50 H 0.093 0.907 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.437 3.456 21.800 22.076 hybrid contribution 0.604 0.084 -0.945 1.124 sum 1.041 3.541 20.855 21.179 Atomic orbital electron populations 1.21656 0.96135 0.99153 1.02700 1.21838 0.96319 0.97948 0.99884 1.19582 0.90824 0.91304 0.87463 1.42455 1.65595 1.27230 1.00114 1.19053 1.23859 1.09083 0.83831 0.91392 1.24667 1.00254 0.98341 0.97523 1.69643 1.37352 1.22356 1.28806 0.86383 0.77479 0.78102 0.84914 1.21481 1.21927 1.21454 1.22336 0.99096 0.95314 1.00791 1.21639 0.97569 0.92211 0.88673 1.47932 1.08030 1.48109 1.26432 1.16828 0.85503 0.78797 0.81062 1.90778 1.14601 1.61839 1.76052 1.21940 0.90589 1.04642 1.00470 1.25227 0.95754 0.98293 0.87634 1.84371 1.20054 1.58199 1.45632 1.26360 0.88062 0.92940 0.93540 1.19733 0.88515 0.99895 0.95015 1.22129 0.95495 0.99801 1.00093 1.23116 1.00966 0.95512 1.01156 1.23027 1.00326 1.02384 0.95417 1.70486 1.16590 1.20724 1.09718 1.22870 0.78130 0.98410 1.06040 1.22036 1.01050 0.95329 0.97712 0.90839 0.94993 0.93846 0.92113 0.94312 0.78199 0.93662 0.93545 0.90828 0.89522 0.90631 0.75409 0.88271 0.87042 0.87535 0.87998 0.88573 0.88560 0.88361 0.91369 0.84288 0.90652 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.47 37.15 0.35 -2.13 16 2 C -0.12 -2.19 4.73 -26.73 -0.13 -2.31 16 3 C 0.20 3.78 0.44 -131.77 -0.06 3.72 16 4 N -0.71 -16.35 3.48 -47.19 -0.16 -16.51 16 5 C -0.23 -5.86 8.57 -15.06 -0.13 -5.99 16 6 H 0.07 1.74 6.73 -52.49 -0.35 1.39 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.21 13.06 55.49 0.72 -26.48 16 9 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C -0.13 -2.49 4.78 -26.61 -0.13 -2.62 16 14 C 0.12 2.30 6.16 -3.71 -0.02 2.28 16 15 N -0.58 -10.34 2.97 -174.05 -0.52 -10.86 16 16 C 0.59 10.42 7.68 -12.52 -0.10 10.33 16 17 O -0.55 -10.83 16.34 5.27 0.09 -10.75 16 18 C -0.06 -0.82 6.72 -83.02 -0.56 -1.38 16 19 C 0.00 0.05 11.95 29.96 0.36 0.41 16 20 O -0.20 -2.08 10.73 6.52 0.07 -2.01 16 21 C 0.20 2.10 7.51 -13.08 -0.10 2.00 16 22 C 0.01 0.04 6.12 -27.88 -0.17 -0.13 16 23 C -0.16 -1.07 5.72 -90.62 -0.52 -1.59 16 24 C -0.17 -1.15 10.18 -26.69 -0.27 -1.43 16 25 C -0.17 -0.95 10.25 -26.69 -0.27 -1.22 16 26 N -0.45 -5.92 7.75 -7.65 -0.06 -5.98 16 27 C 0.07 1.16 6.05 -3.71 -0.02 1.13 16 28 C -0.12 -2.06 4.68 -26.61 -0.12 -2.18 16 29 H 0.07 1.56 7.63 -51.93 -0.40 1.16 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.71 6.18 -51.93 -0.32 0.39 16 32 H 0.06 1.20 7.14 -51.93 -0.37 0.82 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.38 9.56 6.34 -40.82 -0.26 9.30 16 35 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.42 7.49 -51.93 -0.39 1.03 16 38 H 0.09 1.88 7.74 -51.93 -0.40 1.48 16 39 H 0.08 1.43 7.05 -51.93 -0.37 1.06 16 40 H 0.23 1.95 8.06 -52.49 -0.42 1.53 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.11 0.72 7.88 -51.93 -0.41 0.31 16 43 H 0.11 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.10 0.68 8.03 -51.93 -0.42 0.27 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.07 1.31 6.85 -51.93 -0.36 0.95 16 49 H 0.14 2.19 3.68 -76.12 -0.28 1.91 16 50 H 0.08 1.24 6.27 -51.93 -0.33 0.92 16 51 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -30.96 400.27 -8.84 -39.80 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -8.00 Total: 11.20 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -1.98 Total: -1.53 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.02 Total: -59.83 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.16 Total: -12.76 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.96 -8.84 -39.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700222165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.236 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds