Wall clock time and date at job start Wed Apr 1 2020 04:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50707 * 109.46934 * 2 1 4 4 C 1.38362 * 120.27021 * 269.97428 * 3 2 1 5 5 N 1.31875 * 121.18393 * 179.74465 * 4 3 2 6 6 C 1.32235 * 121.80335 * 0.56897 * 5 4 3 7 7 O 1.35423 * 119.80537 * 179.70965 * 6 5 4 8 8 C 1.40284 * 120.39838 * 359.43728 * 6 5 4 9 9 C 1.47520 * 120.59916 * 180.29614 * 8 6 5 10 10 O 1.21592 * 120.00278 * 359.97438 * 9 8 6 11 11 N 1.34774 * 120.00282 * 180.02562 * 9 8 6 12 12 C 1.46505 * 120.00257 * 174.65738 * 11 9 8 13 13 C 1.52998 * 109.46729 * 303.96479 * 12 11 9 14 14 N 1.46503 * 109.47293 * 305.41914 * 13 12 11 15 15 C 1.36931 * 119.99805 * 175.04092 * 14 13 12 16 16 H 1.08002 * 120.00320 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99905 * 180.02562 * 15 14 13 18 18 N 1.31621 * 119.99918 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00022 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47316 * 89.99915 * 19 17 15 21 21 H 1.48502 * 109.46857 * 209.99955 * 19 17 15 22 22 H 1.48503 * 109.46971 * 329.99718 * 19 17 15 23 23 C 1.53001 * 109.47144 * 183.96598 * 12 11 9 24 24 C 1.53006 * 109.47024 * 299.99994 * 23 12 11 25 25 C 1.53003 * 109.46707 * 300.00047 * 24 23 12 26 26 C 1.53000 * 109.47090 * 60.00386 * 25 24 23 27 27 C 1.52992 * 109.46922 * 299.99409 * 26 25 24 28 28 C 1.38333 * 120.27085 * 90.00062 * 3 2 1 29 29 H 1.09000 * 109.46900 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47741 * 300.00112 * 1 2 3 31 31 H 1.09004 * 109.47084 * 60.00286 * 1 2 3 32 32 H 1.08999 * 109.47741 * 239.99888 * 2 1 3 33 33 H 1.08997 * 109.47440 * 119.99647 * 2 1 3 34 34 H 1.07999 * 119.40320 * 0.02628 * 4 3 2 35 35 H 0.96704 * 114.00346 * 269.73264 * 7 6 5 36 36 H 0.96999 * 119.99906 * 354.65675 * 11 9 8 37 37 H 1.08998 * 109.47352 * 65.42326 * 13 12 11 38 38 H 1.09007 * 109.46571 * 185.42191 * 13 12 11 39 39 H 0.96998 * 119.99670 * 355.04169 * 14 13 12 40 40 H 0.97001 * 119.99645 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.46982 * 59.99591 * 23 12 11 42 42 H 1.08993 * 109.46909 * 180.02562 * 23 12 11 43 43 H 1.08997 * 109.47189 * 180.02562 * 24 23 12 44 44 H 1.08996 * 109.46916 * 59.99841 * 24 23 12 45 45 H 1.08996 * 109.47265 * 299.99580 * 25 24 23 46 46 H 1.09005 * 109.46405 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.46655 * 180.02562 * 26 25 24 48 48 H 1.08999 * 109.47258 * 60.00064 * 26 25 24 49 49 H 1.08999 * 109.47689 * 300.00391 * 27 26 25 50 50 H 1.09006 * 109.47206 * 180.02562 * 27 26 25 51 51 H 1.07995 * 120.82509 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2652 2.0783 -1.1950 5 7 2.7000 3.3231 -1.2160 6 6 2.9433 3.9952 -0.1035 7 8 3.3945 5.2702 -0.1723 8 6 2.7314 3.3973 1.1478 9 6 2.9952 4.1452 2.3917 10 8 3.4005 5.2903 2.3383 11 7 2.7880 3.5589 3.5874 12 6 3.1598 4.2577 4.8202 13 6 4.6407 4.6379 4.7640 14 7 5.4424 3.4411 4.4971 15 6 6.7932 3.5516 4.3017 16 1 7.2677 4.5208 4.3448 17 6 7.5528 2.4177 4.0483 18 7 6.9747 1.2363 3.9964 19 14 9.3957 2.5682 3.7825 20 1 10.0958 2.4428 5.0861 21 1 9.8537 1.4906 2.8690 22 1 9.7027 3.8908 3.1809 23 6 2.9138 3.3408 6.0201 24 6 1.4328 2.9605 6.0762 25 6 0.5862 4.2269 6.2198 26 6 0.8322 5.1436 5.0198 27 6 2.3131 5.5239 4.9638 28 6 2.2647 2.0783 1.1947 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.0834 1.5642 -2.1272 35 1 4.3584 5.3458 -0.1922 36 1 2.3927 2.6742 3.6317 37 1 4.7989 5.3661 3.9686 38 1 4.9409 5.0711 5.7182 39 1 5.0163 2.5706 4.4588 40 1 7.5056 0.4440 3.8196 41 1 3.5169 2.4387 5.9177 42 1 3.1899 3.8609 6.9373 43 1 1.2574 2.3077 6.9313 44 1 1.1562 2.4407 5.1590 45 1 0.8627 4.7467 7.1370 46 1 -0.4688 3.9558 6.2602 47 1 0.2294 6.0460 5.1224 48 1 0.5555 4.6237 4.1026 49 1 2.5897 6.0438 5.8810 50 1 2.4883 6.1774 4.1091 51 1 2.0903 1.5863 2.1401 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700515877.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:44 Heat of formation + Delta-G solvation = -44.856510 kcal Electronic energy + Delta-G solvation = -32678.224825 eV Core-core repulsion = 28577.432920 eV Total energy + Delta-G solvation = -4100.791904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.90684 -39.87103 -37.61613 -37.00857 -34.63112 -34.30085 -33.39319 -32.36151 -30.90997 -30.63250 -29.30414 -28.96719 -25.27229 -24.76718 -24.05805 -23.00636 -22.52599 -22.06541 -20.69410 -20.27690 -18.90085 -18.60075 -17.35828 -17.19327 -16.97598 -15.94496 -15.28966 -15.08795 -14.97135 -14.62832 -14.41057 -14.18320 -14.10699 -13.78618 -13.59113 -13.35165 -13.24343 -13.22432 -13.03657 -12.89630 -12.26781 -12.17328 -12.11484 -11.99007 -11.81638 -11.69754 -11.42773 -11.26745 -11.18393 -10.97211 -10.87560 -10.79578 -10.50941 -10.19039 -10.08429 -9.96892 -9.81939 -9.64355 -9.61393 -9.09999 -8.79632 -8.71688 -8.46689 -6.84611 -5.74805 -3.00350 0.69056 1.10520 3.12041 3.38995 3.44288 3.49913 3.51493 3.71671 3.97995 4.48421 4.61176 4.61542 4.73058 4.77089 4.86490 4.90183 4.93952 5.07893 5.14455 5.21924 5.32186 5.35476 5.40512 5.55824 5.61153 5.62770 5.65461 5.66915 5.71387 5.73328 5.79660 5.82435 5.87535 5.98520 6.11286 6.13652 6.14865 6.22688 6.31084 6.33656 6.42212 6.43089 6.53162 6.60599 6.68818 6.93468 7.13875 7.63598 7.74250 7.87108 7.95156 8.45050 8.66184 9.56643 10.14935 10.50868 11.48378 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006947 B = 0.005013 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4029.809809 B = 5583.657396 C = 7441.966823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.079 4.079 3 C -0.154 4.154 4 C 0.143 3.857 5 N -0.508 5.508 6 C 0.362 3.638 7 O -0.462 6.462 8 C -0.187 4.187 9 C 0.573 3.427 10 O -0.512 6.512 11 N -0.704 5.704 12 C 0.180 3.820 13 C 0.139 3.861 14 N -0.724 5.724 15 C -0.228 4.228 16 H 0.068 0.932 17 C -0.016 4.016 18 N -0.936 5.936 19 Si 0.903 3.097 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.283 1.283 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.113 4.113 27 C -0.128 4.128 28 C -0.024 4.024 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.160 0.840 35 H 0.407 0.593 36 H 0.391 0.609 37 H 0.049 0.951 38 H 0.019 0.981 39 H 0.381 0.619 40 H 0.252 0.748 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.066 0.934 50 H 0.084 0.916 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.988 -1.355 -3.142 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.157 4.157 4 C -0.015 4.015 5 N -0.226 5.226 6 C 0.183 3.817 7 O -0.270 6.270 8 C -0.193 4.193 9 C 0.359 3.641 10 O -0.388 6.388 11 N -0.356 5.356 12 C 0.094 3.906 13 C 0.011 3.989 14 N -0.368 5.368 15 C -0.359 4.359 16 H 0.086 0.914 17 C -0.211 4.211 18 N -0.586 5.586 19 Si 0.735 3.265 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.209 1.209 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.167 4.167 28 C -0.051 4.051 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.267 0.733 36 H 0.226 0.774 37 H 0.067 0.933 38 H 0.037 0.963 39 H 0.215 0.785 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.103 0.897 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.910 0.205 -3.941 17.364 hybrid contribution 1.252 -1.303 0.631 1.914 sum -15.658 -1.098 -3.310 16.042 Atomic orbital electron populations 1.21773 0.94592 1.01900 1.02224 1.20456 0.96048 0.91395 1.03756 1.20796 1.02774 0.98382 0.93701 1.22547 0.92458 0.88825 0.97671 1.67288 1.14869 1.08821 1.31606 1.19150 0.91838 0.84419 0.86328 1.84648 1.28111 1.18959 1.95311 1.21258 1.07200 0.95596 0.95274 1.17533 0.77873 0.86127 0.82604 1.90733 1.44364 1.16915 1.86776 1.45768 1.64063 1.20537 1.05251 1.20557 0.95442 0.91770 0.82841 1.21112 0.87276 0.91838 0.98679 1.42213 1.04692 1.03813 1.86125 1.19233 0.84013 0.93193 1.39502 0.91407 1.24655 0.97763 0.95395 1.03278 1.69643 1.34439 0.97344 1.57184 0.86234 0.85924 0.76854 0.77512 1.21836 1.21937 1.20861 1.21796 0.95805 1.00621 0.97590 1.21557 0.95395 0.97327 1.01379 1.21550 0.98983 0.96403 0.98626 1.21450 0.96601 0.98897 0.98131 1.21908 0.94037 0.97592 1.03130 1.21593 0.92501 0.92190 0.98767 0.92131 0.92546 0.92556 0.90445 0.90317 0.82280 0.73301 0.77387 0.93279 0.96288 0.78516 0.93790 0.90235 0.90495 0.91939 0.92493 0.92065 0.92603 0.92535 0.92336 0.91486 0.89738 0.84323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.89 37.15 0.37 -0.69 16 2 C -0.08 -0.66 6.08 -27.88 -0.17 -0.83 16 3 C -0.15 -1.76 5.14 -104.54 -0.54 -2.30 16 4 C 0.14 1.74 10.84 -17.49 -0.19 1.55 16 5 N -0.51 -7.79 10.37 -12.98 -0.13 -7.93 16 6 C 0.36 6.04 7.77 -16.61 -0.13 5.91 16 7 O -0.46 -7.78 11.66 -39.73 -0.46 -8.25 16 8 C -0.19 -3.01 5.90 -104.69 -0.62 -3.63 16 9 C 0.57 10.15 7.18 -12.48 -0.09 10.06 16 10 O -0.51 -10.40 11.49 -16.49 -0.19 -10.59 16 11 N -0.70 -10.94 3.53 -48.64 -0.17 -11.12 16 12 C 0.18 2.87 0.32 -131.82 -0.04 2.83 16 13 C 0.14 2.89 4.79 -4.04 -0.02 2.87 16 14 N -0.72 -17.89 5.18 -59.91 -0.31 -18.20 16 15 C -0.23 -6.40 9.99 -15.06 -0.15 -6.55 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.94 -27.67 13.06 55.49 0.72 -26.94 16 19 Si 0.90 22.67 29.55 -169.99 -5.02 17.64 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 C -0.12 -1.71 4.67 -26.73 -0.12 -1.83 16 24 C -0.12 -1.32 5.75 -26.73 -0.15 -1.48 16 25 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 26 C -0.11 -1.36 5.77 -26.73 -0.15 -1.52 16 27 C -0.13 -1.86 4.58 -26.74 -0.12 -1.98 16 28 C -0.02 -0.32 9.31 -38.89 -0.36 -0.68 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 34 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.41 5.70 9.06 45.56 0.41 6.12 16 36 H 0.39 5.26 5.32 -40.82 -0.22 5.04 16 37 H 0.05 1.14 6.25 -51.93 -0.32 0.82 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.38 9.64 6.46 -40.82 -0.26 9.37 16 40 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.08 1.30 7.11 -51.93 -0.37 0.93 16 42 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.60 6.78 -51.93 -0.35 0.25 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.74 7.60 -51.93 -0.39 0.35 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.08 1.43 6.28 -51.93 -0.33 1.10 16 51 H 0.14 1.53 6.53 -52.49 -0.34 1.19 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -33.80 398.76 -9.52 -43.32 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -7.21 Total: 16.25 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.75 Total: -0.20 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: 0.11 Total: -64.19 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.65 Total: -18.84 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.80 -9.52 -43.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700515877.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.534 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds