Wall clock time and date at job start Wed Apr 1 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.46973 * 2 1 4 4 C 1.42899 * 113.99800 * 180.02562 * 3 2 1 5 5 H 1.09001 * 110.30797 * 27.82371 * 4 3 2 6 6 C 1.54390 * 110.34131 * 265.53415 * 4 3 2 7 7 N 1.48145 * 104.61749 * 264.99721 * 6 4 3 8 8 C 1.34780 * 127.83907 * 140.40780 * 7 6 4 9 9 O 1.21554 * 120.00014 * 353.87969 * 8 7 6 10 10 C 1.47837 * 119.99885 * 173.87368 * 8 7 6 11 11 C 1.39563 * 120.55897 * 159.13504 * 10 8 7 12 12 N 1.31669 * 120.56238 * 179.75198 * 11 10 8 13 13 C 1.31954 * 121.88411 * 0.53703 * 12 11 10 14 14 C 1.38314 * 121.07828 * 359.72102 * 13 12 11 15 15 C 1.50694 * 120.34465 * 179.97438 * 14 13 12 16 16 C 1.53010 * 109.47129 * 270.02281 * 15 14 13 17 17 C 1.38397 * 119.30496 * 0.02562 * 14 13 12 18 18 C 1.48316 * 104.39330 * 320.47325 * 7 6 4 19 19 C 1.54283 * 110.34128 * 149.99841 * 4 3 2 20 20 H 1.08996 * 110.34643 * 359.89288 * 19 4 3 21 21 C 1.52999 * 110.34327 * 237.73873 * 19 4 3 22 22 N 1.46497 * 109.47392 * 176.47517 * 21 19 4 23 23 C 1.36939 * 120.00047 * 180.02562 * 22 21 19 24 24 H 1.07997 * 119.99940 * 359.97438 * 23 22 21 25 25 C 1.38815 * 119.99700 * 180.27546 * 23 22 21 26 26 N 1.31614 * 120.00005 * 359.72416 * 25 23 22 27 27 Si 1.86801 * 119.99760 * 179.72323 * 25 23 22 28 28 H 1.48498 * 109.47187 * 59.99744 * 27 25 23 29 29 H 1.48502 * 109.46957 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47142 * 299.99625 * 27 25 23 31 31 H 1.08998 * 109.46835 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47062 * 300.00402 * 1 2 3 33 33 H 1.08999 * 109.46898 * 60.00331 * 1 2 3 34 34 H 1.08997 * 109.47208 * 240.00043 * 2 1 3 35 35 H 1.08999 * 109.46898 * 119.99669 * 2 1 3 36 36 H 1.08994 * 110.40765 * 23.78165 * 6 4 3 37 37 H 1.09001 * 110.40747 * 146.21642 * 6 4 3 38 38 H 1.07994 * 119.71460 * 0.02562 * 11 10 8 39 39 H 1.07995 * 119.45748 * 179.74817 * 13 12 11 40 40 H 1.08998 * 109.47640 * 30.02251 * 15 14 13 41 41 H 1.09006 * 109.47218 * 150.02723 * 15 14 13 42 42 H 1.08995 * 109.46820 * 180.02562 * 16 15 14 43 43 H 1.08998 * 109.46835 * 300.00463 * 16 15 14 44 44 H 1.08997 * 109.46809 * 59.99921 * 16 15 14 45 45 H 1.08000 * 120.85548 * 180.02562 * 17 14 13 46 46 H 1.08996 * 110.38195 * 280.73799 * 18 7 6 47 47 H 1.09000 * 110.50935 * 158.24855 * 18 7 6 48 48 H 1.08999 * 109.47025 * 56.47093 * 21 19 4 49 49 H 1.09005 * 109.47053 * 296.47709 * 21 19 4 50 50 H 0.97005 * 120.00198 * 0.02562 * 22 21 19 51 51 H 0.97007 * 119.99651 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8792 0.5888 -0.4780 6 6 3.9576 1.6147 1.4424 7 7 4.0898 3.0773 1.6376 8 6 3.7960 3.7941 2.7405 9 8 3.2632 3.2558 3.6912 10 6 4.1219 5.2351 2.7939 11 6 3.4681 6.0776 3.6942 12 7 3.7618 7.3601 3.7452 13 6 4.6670 7.9000 2.9513 14 6 5.3552 7.1336 2.0283 15 6 6.3853 7.7675 1.1293 16 6 5.7121 8.2489 -0.1576 17 6 5.0872 5.7788 1.9382 18 6 4.6173 3.5756 0.3441 19 6 3.8663 2.7515 -0.7239 20 1 2.9938 3.2988 -1.0804 21 6 4.7979 2.4190 -1.8912 22 7 5.1319 3.6482 -2.6149 23 6 5.9579 3.5974 -3.7059 24 1 6.3634 2.6513 -4.0327 25 6 6.2789 4.7629 -4.3882 26 7 5.7852 5.9160 -3.9896 27 14 7.4118 4.6947 -5.8719 28 1 6.8115 3.8231 -6.9135 29 1 7.5962 6.0636 -6.4172 30 1 8.7290 4.1434 -5.4640 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 3.2441 1.1993 2.1540 37 1 4.9274 1.1281 1.5472 38 1 2.7180 5.6732 4.3577 39 1 4.8741 8.9574 3.0238 40 1 6.8409 8.6157 1.6402 41 1 7.1544 7.0347 0.8848 42 1 6.4572 8.7069 -0.8080 43 1 5.2565 7.4006 -0.6685 44 1 4.9430 8.9815 0.0868 45 1 5.6101 5.1569 1.2267 46 1 5.6903 3.3963 0.2773 47 1 4.4003 4.6373 0.2267 48 1 4.2999 1.7235 -2.5668 49 1 5.7111 1.9629 -1.5087 50 1 4.7680 4.4981 -2.3212 51 1 6.0093 6.7304 -4.4667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707145795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:54 Heat of formation + Delta-G solvation = -28.642019 kcal Electronic energy + Delta-G solvation = -31601.085445 eV Core-core repulsion = 27500.996654 eV Total energy + Delta-G solvation = -4100.088791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.88495 -39.70254 -38.28392 -36.67339 -34.79941 -34.59425 -32.83823 -31.96331 -31.27562 -29.68016 -29.60371 -28.41171 -25.95489 -24.68645 -24.20568 -23.44516 -22.90523 -22.20777 -21.47919 -20.11696 -19.50246 -17.55346 -17.08742 -17.01687 -16.92493 -16.45736 -16.05712 -15.62739 -15.16902 -14.74545 -14.48105 -14.42965 -14.18116 -13.90862 -13.68509 -13.55457 -13.36461 -13.25205 -13.00672 -12.76973 -12.64752 -12.49674 -12.40823 -12.12556 -11.94622 -11.76479 -11.46061 -11.38075 -11.23999 -11.06494 -10.89638 -10.85496 -10.80554 -10.51962 -10.21651 -10.11258 -9.86371 -9.78818 -9.61364 -9.44835 -9.04672 -8.97387 -8.65485 -7.03989 -5.85638 -3.15087 0.62901 1.13918 2.76608 2.86572 3.37816 3.42969 3.43449 3.58375 3.76727 4.18854 4.42527 4.47205 4.58333 4.63257 4.70040 4.81488 4.86815 4.97147 5.02203 5.07654 5.12594 5.20697 5.27815 5.37054 5.39072 5.44204 5.47469 5.49325 5.50659 5.63648 5.65767 5.76074 5.78403 5.80349 5.83837 5.93170 5.94362 6.00922 6.05072 6.13867 6.15994 6.20050 6.29839 6.51082 6.55496 6.58459 6.64287 7.25245 7.46574 7.61243 7.81164 8.07865 8.32154 9.44311 9.98337 10.33716 11.36512 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006306 B = 0.004732 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4438.861040 B = 5915.241023 C = 9754.748457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.372 6.372 4 C 0.082 3.918 5 H 0.084 0.916 6 C 0.087 3.913 7 N -0.612 5.612 8 C 0.588 3.412 9 O -0.541 6.541 10 C -0.178 4.178 11 C 0.148 3.852 12 N -0.487 5.487 13 C 0.118 3.882 14 C -0.132 4.132 15 C -0.080 4.080 16 C -0.147 4.147 17 C -0.050 4.050 18 C 0.099 3.901 19 C -0.106 4.106 20 H 0.097 0.903 21 C 0.164 3.836 22 N -0.730 5.730 23 C -0.244 4.244 24 H 0.069 0.931 25 C -0.008 4.008 26 N -0.929 5.929 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.154 0.846 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.025 0.975 49 H 0.024 0.976 50 H 0.384 0.616 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.046 -4.004 11.881 12.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.291 6.291 4 C 0.022 3.978 5 H 0.102 0.898 6 C -0.036 4.036 7 N -0.345 5.345 8 C 0.377 3.623 9 O -0.419 6.419 10 C -0.183 4.183 11 C -0.010 4.010 12 N -0.194 5.194 13 C -0.038 4.038 14 C -0.134 4.134 15 C -0.118 4.118 16 C -0.204 4.204 17 C -0.076 4.076 18 C -0.023 4.023 19 C -0.125 4.125 20 H 0.115 0.885 21 C 0.036 3.964 22 N -0.375 5.375 23 C -0.375 4.375 24 H 0.087 0.913 25 C -0.204 4.204 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.182 0.818 39 H 0.175 0.825 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.171 0.829 46 H 0.104 0.896 47 H 0.110 0.890 48 H 0.043 0.957 49 H 0.041 0.959 50 H 0.218 0.782 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.809 -3.583 12.956 13.972 hybrid contribution 1.132 -0.498 -1.518 1.958 sum -2.677 -4.081 11.438 12.436 Atomic orbital electron populations 1.21730 0.93890 1.01999 1.03198 1.22524 0.95626 0.84121 0.99927 1.88019 1.20287 1.26100 1.94724 1.23052 0.81687 0.98959 0.94066 0.89826 1.22863 1.01618 0.81387 0.97747 1.48810 1.64189 1.08471 1.13030 1.17636 0.77914 0.85441 0.81297 1.90762 1.43256 1.71884 1.36044 1.20872 1.01708 0.94614 1.01152 1.22888 0.96035 0.88072 0.94044 1.67783 1.15388 1.12774 1.23468 1.22900 0.90472 1.00268 0.90185 1.20991 0.99765 0.94126 0.98512 1.20533 0.95695 1.00425 0.95159 1.21745 1.00740 1.02129 0.95836 1.22301 0.94706 0.95322 0.95251 1.22978 0.98589 0.99972 0.80728 1.22459 0.99898 0.94773 0.95389 0.88521 1.20700 0.94272 0.91088 0.90381 1.42298 1.58071 1.03857 1.33244 1.19133 1.20760 0.93461 1.04132 0.91259 1.24694 1.00775 0.95409 0.99539 1.69630 1.48268 0.97575 1.42249 0.86310 0.80660 0.76553 0.82879 1.21286 1.21667 1.21284 0.91299 0.91957 0.91762 0.93174 0.93571 0.89296 0.90085 0.81814 0.82456 0.90841 0.90371 0.91794 0.91103 0.93111 0.82882 0.89592 0.88987 0.95708 0.95858 0.78238 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.05 0.59 6.50 37.16 0.24 0.83 16 3 O -0.37 -5.22 9.95 -35.23 -0.35 -5.57 16 4 C 0.08 1.06 3.20 -25.33 -0.08 0.98 16 5 H 0.08 0.94 7.38 -51.93 -0.38 0.56 16 6 C 0.09 1.10 6.82 -2.41 -0.02 1.08 16 7 N -0.61 -8.76 3.32 -170.28 -0.56 -9.32 16 8 C 0.59 9.25 7.75 -12.33 -0.10 9.15 16 9 O -0.54 -9.80 16.81 5.32 0.09 -9.71 16 10 C -0.18 -2.56 5.78 -104.82 -0.61 -3.16 16 11 C 0.15 2.08 10.76 -17.13 -0.18 1.89 16 12 N -0.49 -6.68 10.35 -12.91 -0.13 -6.81 16 13 C 0.12 1.42 10.85 -17.47 -0.19 1.23 16 14 C -0.13 -1.61 5.15 -104.54 -0.54 -2.15 16 15 C -0.08 -0.89 6.08 -27.88 -0.17 -1.06 16 16 C -0.15 -1.89 9.90 37.16 0.37 -1.52 16 17 C -0.05 -0.66 7.81 -38.87 -0.30 -0.97 16 18 C 0.10 1.41 4.38 -2.31 -0.01 1.39 16 19 C -0.11 -1.59 2.92 -89.22 -0.26 -1.85 16 20 H 0.10 1.65 7.98 -51.93 -0.41 1.23 16 21 C 0.16 2.90 5.37 -4.04 -0.02 2.88 16 22 N -0.73 -16.60 5.46 -59.91 -0.33 -16.93 16 23 C -0.24 -6.30 9.99 -15.06 -0.15 -6.45 16 24 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 26 N -0.93 -25.82 13.06 55.49 0.72 -25.10 16 27 Si 0.91 21.18 29.55 -169.99 -5.02 16.16 16 28 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.49 8.10 -51.93 -0.42 0.07 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 1.19 7.78 -51.93 -0.40 0.79 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.16 2.15 7.80 -52.49 -0.41 1.74 16 39 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 41 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.15 1.98 4.84 -52.49 -0.25 1.72 16 46 H 0.09 1.19 7.51 -51.93 -0.39 0.80 16 47 H 0.09 1.35 5.64 -51.93 -0.29 1.06 16 48 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.02 0.40 8.02 -51.93 -0.42 -0.01 16 50 H 0.38 9.14 7.56 -40.82 -0.31 8.83 16 51 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 415.12 15.07 6.26 6.26 Total: -1.00 -30.96 415.12 -9.37 -40.33 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -8.31 Total: 9.80 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.73 Total: 0.91 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: -0.30 Total: -58.16 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.26 Total: -15.29 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.96 -9.37 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707145795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.687 kcal (2) G-P(sol) polarization free energy of solvation -30.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds