Wall clock time and date at job start Wed Apr 1 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.47161 * 2 1 4 4 C 1.38630 * 120.75285 * 89.99712 * 3 2 1 5 5 C 1.38556 * 119.35081 * 179.97438 * 4 3 2 6 6 N 1.31519 * 120.90637 * 0.02562 * 5 4 3 7 7 C 1.32717 * 121.64068 * 359.97438 * 6 5 4 8 8 C 1.48174 * 119.72575 * 179.97438 * 7 6 5 9 9 O 1.21508 * 120.00127 * 170.40069 * 8 7 6 10 10 N 1.34778 * 119.99540 * 350.40966 * 8 7 6 11 11 C 1.46921 * 120.63354 * 350.47446 * 10 8 7 12 12 C 1.53188 * 108.77622 * 233.58894 * 11 10 8 13 13 C 1.53037 * 109.34328 * 305.38192 * 12 11 10 14 14 C 1.53039 * 109.53851 * 61.31508 * 13 12 11 15 15 H 1.09003 * 109.49497 * 58.65054 * 14 13 12 16 16 N 1.46492 * 109.49750 * 178.71517 * 14 13 12 17 17 C 1.36936 * 119.99886 * 54.95680 * 16 14 13 18 18 H 1.07993 * 120.00361 * 31.80487 * 17 16 14 19 19 C 1.38815 * 119.99699 * 212.08827 * 17 16 14 20 20 N 1.31616 * 120.00235 * 23.80095 * 19 17 16 21 21 Si 1.86801 * 119.99936 * 203.80653 * 19 17 16 22 22 H 1.48500 * 109.47183 * 89.99747 * 21 19 17 23 23 H 1.48506 * 109.47153 * 209.99911 * 21 19 17 24 24 H 1.48507 * 109.47015 * 329.99653 * 21 19 17 25 25 C 1.46506 * 120.00243 * 234.94776 * 16 14 13 26 26 C 1.52994 * 109.47302 * 270.00265 * 25 16 14 27 27 O 1.42903 * 109.47150 * 65.00039 * 26 25 16 28 28 C 1.46928 * 120.62748 * 170.46042 * 10 8 7 29 29 C 1.38589 * 120.75739 * 270.27394 * 3 2 1 30 30 H 1.09002 * 109.46490 * 59.99495 * 1 2 3 31 31 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46695 * 299.99995 * 1 2 3 33 33 H 1.08993 * 109.46963 * 240.00253 * 2 1 3 34 34 H 1.09004 * 109.46598 * 119.99964 * 2 1 3 35 35 H 1.08000 * 120.32598 * 359.97438 * 4 3 2 36 36 H 1.08007 * 119.54967 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.58361 * 353.38131 * 11 10 8 38 38 H 1.09000 * 109.58763 * 113.80160 * 11 10 8 39 39 H 1.09002 * 109.49430 * 65.32260 * 12 11 10 40 40 H 1.09006 * 109.49724 * 185.37960 * 12 11 10 41 41 H 1.09000 * 109.42960 * 301.31410 * 13 12 11 42 42 H 1.08999 * 109.48391 * 181.35061 * 13 12 11 43 43 H 0.96999 * 120.00233 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.46537 * 30.00517 * 25 16 14 45 45 H 1.08997 * 109.46779 * 149.99792 * 25 16 14 46 46 H 1.08996 * 109.47039 * 184.99682 * 26 25 16 47 47 H 1.08997 * 109.47645 * 304.99985 * 26 25 16 48 48 H 0.96703 * 114.00129 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.58784 * 6.61929 * 28 10 8 50 50 H 1.09003 * 109.70004 * 246.26836 * 28 10 8 51 51 H 1.07994 * 120.47164 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2687 2.0891 1.1914 5 6 2.7309 3.3949 1.1575 6 7 2.9469 4.0055 0.0128 7 6 2.7334 3.4017 -1.1496 8 6 2.9904 4.1301 -2.4140 9 8 2.9664 3.5355 -3.4734 10 7 3.2511 5.4522 -2.3890 11 6 3.0809 6.2255 -1.1514 12 6 2.1687 7.4220 -1.4392 13 6 2.7409 8.2260 -2.6089 14 6 2.7918 7.3449 -3.8592 15 1 1.7887 6.9890 -4.0945 16 7 3.3109 8.1243 -4.9857 17 6 4.5187 8.7608 -4.8791 18 1 5.3014 8.3351 -4.2689 19 6 4.7348 9.9562 -5.5507 20 7 3.7139 10.7148 -5.8892 21 14 6.4747 10.4882 -5.9743 22 1 6.8428 9.9577 -7.3116 23 1 6.5482 11.9713 -5.9927 24 1 7.4162 9.9586 -4.9552 25 6 2.5381 8.2225 -6.2265 26 6 2.9336 7.0812 -7.1654 27 8 2.5557 5.8323 -6.5826 28 6 3.7111 6.1475 -3.5989 29 6 2.2633 2.0909 -1.1909 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0941 1.5969 2.1367 36 1 2.9164 3.9185 2.0837 37 1 2.6270 5.5955 -0.3865 38 1 4.0518 6.5809 -0.8062 39 1 1.1713 7.0654 -1.6967 40 1 2.1110 8.0565 -0.5547 41 1 3.7476 8.5617 -2.3600 42 1 2.1064 9.0914 -2.8001 43 1 3.8650 11.5503 -6.3582 44 1 1.4745 8.1535 -5.9984 45 1 2.7450 9.1779 -6.7086 46 1 2.4251 7.2045 -8.1215 47 1 4.0120 7.0971 -7.3227 48 1 2.7761 5.0625 -7.1248 49 1 3.6730 5.4660 -4.4488 50 1 4.7338 6.4963 -3.4558 51 1 2.0854 1.6025 -2.1375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707214762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:30 Heat of formation + Delta-G solvation = -15.800706 kcal Electronic energy + Delta-G solvation = -31843.229606 eV Core-core repulsion = 27743.697656 eV Total energy + Delta-G solvation = -4099.531950 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.90097 -39.14245 -37.31725 -36.13066 -35.38963 -34.50597 -32.20922 -31.45600 -31.14286 -30.67859 -29.43366 -27.14244 -25.69693 -24.72284 -24.21585 -23.50017 -22.16675 -22.00399 -20.60741 -19.81500 -18.84962 -17.23489 -16.76124 -16.62211 -16.27091 -16.11274 -15.52207 -15.25497 -14.92980 -14.72036 -14.34437 -14.18256 -14.05937 -13.97201 -13.55694 -13.39927 -13.36652 -12.90029 -12.82183 -12.72668 -12.45355 -12.21244 -12.12608 -11.99787 -11.65840 -11.40362 -11.32420 -11.08926 -10.77836 -10.63726 -10.59379 -10.27590 -10.12270 -9.95320 -9.90793 -9.83903 -9.76228 -9.42611 -9.35333 -9.02122 -8.84634 -8.50593 -8.05967 -6.57803 -5.76595 -3.27490 0.55927 0.97047 2.86601 3.30328 3.37567 3.45638 3.47230 3.77107 4.08766 4.27418 4.43024 4.51001 4.74536 4.81706 4.88803 4.94244 5.06696 5.23119 5.26596 5.29118 5.40952 5.44673 5.50080 5.58203 5.62099 5.66980 5.74425 5.82401 5.82616 6.02219 6.06492 6.14606 6.24411 6.26365 6.35110 6.43296 6.49758 6.53806 6.63238 6.69271 6.76119 6.89082 7.06164 7.12396 7.27087 7.35086 7.56378 7.68077 7.84324 7.90585 8.47015 8.49275 8.52280 9.21315 9.86004 10.42862 11.23466 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.002809 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.847786 B = 9966.555610 C =10688.700249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.046 4.046 4 C -0.157 4.157 5 C 0.093 3.907 6 N -0.451 5.451 7 C 0.093 3.907 8 C 0.560 3.440 9 O -0.537 6.537 10 N -0.580 5.580 11 C 0.081 3.919 12 C -0.135 4.135 13 C -0.123 4.123 14 C 0.178 3.822 15 H 0.052 0.948 16 N -0.571 5.571 17 C -0.246 4.246 18 H 0.063 0.937 19 C 0.004 3.996 20 N -0.890 5.890 21 Si 0.895 3.105 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.278 1.278 25 C 0.143 3.857 26 C 0.054 3.946 27 O -0.565 6.565 28 C 0.099 3.901 29 C -0.113 4.113 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.162 0.838 37 H 0.132 0.868 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.254 0.746 44 H 0.027 0.973 45 H 0.116 0.884 46 H 0.020 0.980 47 H 0.040 0.960 48 H 0.357 0.643 49 H 0.096 0.904 50 H 0.063 0.937 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 -17.505 13.617 22.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.124 4.124 3 C -0.053 4.053 4 C -0.177 4.177 5 C -0.065 4.065 6 N -0.163 5.163 7 C -0.044 4.044 8 C 0.345 3.655 9 O -0.414 6.414 10 N -0.310 5.310 11 C -0.041 4.041 12 C -0.173 4.173 13 C -0.162 4.162 14 C 0.070 3.930 15 H 0.070 0.930 16 N -0.290 5.290 17 C -0.375 4.375 18 H 0.081 0.919 19 C -0.195 4.195 20 N -0.534 5.534 21 Si 0.725 3.275 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.204 1.204 25 C 0.016 3.984 26 C -0.026 4.026 27 O -0.368 6.368 28 C -0.024 4.024 29 C -0.134 4.134 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.154 0.846 36 H 0.180 0.820 37 H 0.149 0.851 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.046 0.954 45 H 0.133 0.867 46 H 0.039 0.961 47 H 0.058 0.942 48 H 0.201 0.799 49 H 0.115 0.885 50 H 0.082 0.918 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.371 -16.337 13.400 21.802 hybrid contribution 0.949 -0.631 -0.708 1.341 sum -4.423 -16.968 12.692 21.646 Atomic orbital electron populations 1.21759 0.94052 1.02192 1.02569 1.20597 0.96657 0.91489 1.03623 1.20347 0.95621 0.96697 0.92681 1.22192 1.00467 0.96304 0.98688 1.22964 0.94941 0.92180 0.96406 1.67776 1.15120 1.35235 0.98160 1.21434 0.97958 0.92528 0.92489 1.17872 0.78225 0.82424 0.86935 1.90764 1.52535 1.67767 1.30335 1.48072 1.63348 1.06776 1.12817 1.22780 1.00341 0.93943 0.87069 1.22006 0.98974 0.97038 0.99332 1.21938 1.01485 0.98383 0.94417 1.20488 0.94783 0.89830 0.87911 0.92986 1.43750 1.21069 1.55794 1.08413 1.19038 0.89317 1.00714 1.28475 0.91921 1.24991 0.96817 0.94995 1.02709 1.69941 1.29244 1.11574 1.42641 0.86403 0.85125 0.77297 0.78699 1.21522 1.21889 1.20371 1.21230 0.92773 0.97028 0.87325 1.23139 0.98085 0.85628 0.95700 1.86622 1.84975 1.15629 1.49535 1.22445 0.98438 0.95634 0.85850 1.22005 0.97530 0.94329 0.99527 0.92172 0.91924 0.92413 0.90223 0.90387 0.84569 0.82046 0.85110 0.92096 0.92765 0.91697 0.91617 0.92183 0.93597 0.95426 0.86701 0.96142 0.94194 0.79950 0.88522 0.91850 0.83582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16 2 C -0.09 -0.56 6.11 -27.88 -0.17 -0.73 16 3 C -0.05 -0.41 5.17 -104.35 -0.54 -0.95 16 4 C -0.16 -1.23 9.82 -39.32 -0.39 -1.62 16 5 C 0.09 0.86 11.18 -17.57 -0.20 0.66 16 6 N -0.45 -5.74 6.19 -9.80 -0.06 -5.80 16 7 C 0.09 1.36 6.56 -83.00 -0.54 0.81 16 8 C 0.56 10.21 7.64 -12.18 -0.09 10.12 16 9 O -0.54 -11.18 15.81 5.36 0.08 -11.09 16 10 N -0.58 -10.68 2.97 -173.76 -0.52 -11.20 16 11 C 0.08 1.29 5.83 -3.72 -0.02 1.27 16 12 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 13 C -0.12 -2.51 5.03 -26.69 -0.13 -2.64 16 14 C 0.18 3.95 2.39 -67.82 -0.16 3.78 16 15 H 0.05 1.22 7.77 -51.93 -0.40 0.81 16 16 N -0.57 -14.12 2.37 -165.53 -0.39 -14.51 16 17 C -0.25 -6.51 8.12 -15.06 -0.12 -6.63 16 18 H 0.06 1.68 6.99 -52.49 -0.37 1.31 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 20 N -0.89 -24.95 11.24 55.49 0.62 -24.32 16 21 Si 0.89 21.39 29.62 -169.99 -5.03 16.36 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.14 3.44 5.69 -4.04 -0.02 3.42 16 26 C 0.05 1.14 7.39 37.15 0.27 1.42 16 27 O -0.56 -11.47 12.04 -35.23 -0.42 -11.90 16 28 C 0.10 2.10 5.83 -3.71 -0.02 2.08 16 29 C -0.11 -1.38 9.34 -39.05 -0.36 -1.74 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 37 H 0.13 1.88 4.16 -77.73 -0.32 1.56 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.43 7.61 -51.93 -0.39 1.03 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.03 0.66 7.88 -51.93 -0.41 0.25 16 45 H 0.12 3.04 5.21 -51.93 -0.27 2.77 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.36 5.68 9.12 45.56 0.42 6.09 16 49 H 0.10 2.23 5.80 -51.93 -0.30 1.92 16 50 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 51 H 0.15 1.78 7.68 -52.49 -0.40 1.38 16 LS Contribution 401.71 15.07 6.05 6.05 Total: -1.00 -31.71 401.71 -9.50 -41.21 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.45 Total: 8.81 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -2.38 Total: 6.38 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.35 Total: -55.83 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.34 Total: -22.99 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.71 -9.50 -41.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707214762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.413 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds