Wall clock time and date at job start Wed Apr 1 2020 05:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.47161 * 2 1 4 4 C 1.38630 * 120.75285 * 89.99712 * 3 2 1 5 5 C 1.38556 * 119.35081 * 179.97438 * 4 3 2 6 6 N 1.31519 * 120.90637 * 0.02562 * 5 4 3 7 7 C 1.32717 * 121.64068 * 359.97438 * 6 5 4 8 8 C 1.48174 * 119.72575 * 179.97438 * 7 6 5 9 9 O 1.21508 * 120.00127 * 170.40069 * 8 7 6 10 10 N 1.34778 * 119.99540 * 350.40966 * 8 7 6 11 11 C 1.46921 * 120.63354 * 350.47446 * 10 8 7 12 12 C 1.53188 * 108.77622 * 233.58894 * 11 10 8 13 13 C 1.53037 * 109.34328 * 305.38192 * 12 11 10 14 14 C 1.53039 * 109.53851 * 61.31508 * 13 12 11 15 15 H 1.09003 * 109.49497 * 58.65054 * 14 13 12 16 16 N 1.46492 * 109.49750 * 178.71517 * 14 13 12 17 17 C 1.36936 * 119.99886 * 54.95680 * 16 14 13 18 18 H 1.07993 * 120.00361 * 31.80487 * 17 16 14 19 19 C 1.38815 * 119.99699 * 212.08827 * 17 16 14 20 20 N 1.31616 * 120.00235 * 23.80095 * 19 17 16 21 21 Si 1.86801 * 119.99936 * 203.80653 * 19 17 16 22 22 H 1.48500 * 109.47183 * 89.99747 * 21 19 17 23 23 H 1.48506 * 109.47153 * 209.99911 * 21 19 17 24 24 H 1.48507 * 109.47015 * 329.99653 * 21 19 17 25 25 C 1.46506 * 120.00243 * 234.94776 * 16 14 13 26 26 C 1.52994 * 109.47302 * 270.00265 * 25 16 14 27 27 O 1.42903 * 109.47150 * 65.00039 * 26 25 16 28 28 C 1.46928 * 120.62748 * 170.46042 * 10 8 7 29 29 C 1.38589 * 120.75739 * 270.27394 * 3 2 1 30 30 H 1.09002 * 109.46490 * 59.99495 * 1 2 3 31 31 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46695 * 299.99995 * 1 2 3 33 33 H 1.08993 * 109.46963 * 240.00253 * 2 1 3 34 34 H 1.09004 * 109.46598 * 119.99964 * 2 1 3 35 35 H 1.08000 * 120.32598 * 359.97438 * 4 3 2 36 36 H 1.08007 * 119.54967 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.58361 * 353.38131 * 11 10 8 38 38 H 1.09000 * 109.58763 * 113.80160 * 11 10 8 39 39 H 1.09002 * 109.49430 * 65.32260 * 12 11 10 40 40 H 1.09006 * 109.49724 * 185.37960 * 12 11 10 41 41 H 1.09000 * 109.42960 * 301.31410 * 13 12 11 42 42 H 1.08999 * 109.48391 * 181.35061 * 13 12 11 43 43 H 0.96999 * 120.00233 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.46537 * 30.00517 * 25 16 14 45 45 H 1.08997 * 109.46779 * 149.99792 * 25 16 14 46 46 H 1.08996 * 109.47039 * 184.99682 * 26 25 16 47 47 H 1.08997 * 109.47645 * 304.99985 * 26 25 16 48 48 H 0.96703 * 114.00129 * 179.97438 * 27 26 25 49 49 H 1.09000 * 109.58784 * 6.61929 * 28 10 8 50 50 H 1.09003 * 109.70004 * 246.26836 * 28 10 8 51 51 H 1.07994 * 120.47164 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2687 2.0891 1.1914 5 6 2.7309 3.3949 1.1575 6 7 2.9469 4.0055 0.0128 7 6 2.7334 3.4017 -1.1496 8 6 2.9904 4.1301 -2.4140 9 8 2.9664 3.5355 -3.4734 10 7 3.2511 5.4522 -2.3890 11 6 3.0809 6.2255 -1.1514 12 6 2.1687 7.4220 -1.4392 13 6 2.7409 8.2260 -2.6089 14 6 2.7918 7.3449 -3.8592 15 1 1.7887 6.9890 -4.0945 16 7 3.3109 8.1243 -4.9857 17 6 4.5187 8.7608 -4.8791 18 1 5.3014 8.3351 -4.2689 19 6 4.7348 9.9562 -5.5507 20 7 3.7139 10.7148 -5.8892 21 14 6.4747 10.4882 -5.9743 22 1 6.8428 9.9577 -7.3116 23 1 6.5482 11.9713 -5.9927 24 1 7.4162 9.9586 -4.9552 25 6 2.5381 8.2225 -6.2265 26 6 2.9336 7.0812 -7.1654 27 8 2.5557 5.8323 -6.5826 28 6 3.7111 6.1475 -3.5989 29 6 2.2633 2.0909 -1.1909 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.0941 1.5969 2.1367 36 1 2.9164 3.9185 2.0837 37 1 2.6270 5.5955 -0.3865 38 1 4.0518 6.5809 -0.8062 39 1 1.1713 7.0654 -1.6967 40 1 2.1110 8.0565 -0.5547 41 1 3.7476 8.5617 -2.3600 42 1 2.1064 9.0914 -2.8001 43 1 3.8650 11.5503 -6.3582 44 1 1.4745 8.1535 -5.9984 45 1 2.7450 9.1779 -6.7086 46 1 2.4251 7.2045 -8.1215 47 1 4.0120 7.0971 -7.3227 48 1 2.7761 5.0625 -7.1248 49 1 3.6730 5.4660 -4.4488 50 1 4.7338 6.4963 -3.4558 51 1 2.0854 1.6025 -2.1375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707214762.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:29 Heat of formation + Delta-G solvation = -36.048533 kcal Electronic energy + Delta-G solvation = -31844.107618 eV Core-core repulsion = 27743.697656 eV Total energy + Delta-G solvation = -4100.409962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.93647 -40.42644 -38.97184 -37.75733 -36.45537 -35.91579 -33.85520 -32.90629 -32.43824 -31.48650 -30.99637 -29.00093 -27.00324 -26.10889 -25.42876 -24.64823 -23.59096 -22.99824 -22.26623 -21.45446 -20.22030 -18.50373 -18.31585 -18.06652 -17.71790 -17.03956 -16.99518 -16.62882 -16.36308 -16.09325 -15.84777 -15.50270 -15.34597 -14.95916 -14.90556 -14.61783 -14.54478 -14.51542 -14.29040 -14.02154 -13.81459 -13.43698 -13.31260 -13.21484 -13.04436 -12.92784 -12.69201 -12.43879 -12.35234 -12.12373 -11.98918 -11.90592 -11.84425 -11.69320 -11.62026 -11.31093 -11.22760 -10.72110 -10.55431 -10.53441 -10.21539 -9.93595 -9.61182 -8.58617 -7.81639 -5.36496 -0.34884 0.21088 1.45368 1.48713 1.56095 1.70276 1.95474 2.52232 2.80287 3.08642 3.22359 3.51659 3.59309 3.73707 3.74078 4.00228 4.04616 4.09478 4.16033 4.23067 4.31392 4.38542 4.45592 4.46441 4.50390 4.54003 4.60925 4.63144 4.76527 4.80117 4.82639 4.87462 4.96407 4.97846 5.01733 5.08632 5.11011 5.17113 5.24308 5.26030 5.37746 5.39709 5.47178 5.55866 5.59674 5.65096 5.75657 5.82036 6.43856 6.44898 6.73663 7.02187 7.10456 7.16291 7.85493 8.39825 9.15748 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.002809 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.847786 B = 9966.555610 C =10688.700249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.044 4.044 4 C -0.134 4.134 5 C 0.094 3.906 6 N -0.470 5.470 7 C 0.065 3.935 8 C 0.554 3.446 9 O -0.576 6.576 10 N -0.586 5.586 11 C 0.084 3.916 12 C -0.124 4.124 13 C -0.113 4.113 14 C 0.182 3.818 15 H 0.035 0.965 16 N -0.583 5.583 17 C -0.247 4.247 18 H 0.056 0.944 19 C -0.039 4.039 20 N -0.917 5.917 21 Si 0.953 3.047 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.140 3.860 26 C 0.068 3.932 27 O -0.577 6.577 28 C 0.117 3.883 29 C -0.122 4.122 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.180 0.820 36 H 0.200 0.800 37 H 0.157 0.843 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.037 0.963 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.095 0.905 46 H 0.048 0.952 47 H 0.027 0.973 48 H 0.378 0.622 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.587 -19.583 16.975 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.052 4.052 4 C -0.154 4.154 5 C -0.064 4.064 6 N -0.183 5.183 7 C -0.071 4.071 8 C 0.342 3.658 9 O -0.456 6.456 10 N -0.316 5.316 11 C -0.037 4.037 12 C -0.163 4.163 13 C -0.153 4.153 14 C 0.074 3.926 15 H 0.053 0.947 16 N -0.303 5.303 17 C -0.377 4.377 18 H 0.073 0.927 19 C -0.235 4.235 20 N -0.562 5.562 21 Si 0.782 3.218 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.014 3.986 26 C -0.012 4.012 27 O -0.383 6.383 28 C -0.007 4.007 29 C -0.143 4.143 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.123 0.877 35 H 0.198 0.802 36 H 0.217 0.783 37 H 0.173 0.827 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.112 0.888 46 H 0.066 0.934 47 H 0.045 0.955 48 H 0.225 0.775 49 H 0.092 0.908 50 H 0.066 0.934 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.502 -18.445 16.770 25.529 hybrid contribution 0.921 -0.132 -1.635 1.881 sum -4.582 -18.577 15.135 24.396 Atomic orbital electron populations 1.21759 0.93711 1.02991 1.02022 1.20679 0.96791 0.89838 1.04843 1.20681 0.94703 0.97846 0.91922 1.22684 0.97340 0.95549 0.99794 1.23642 0.93578 0.93051 0.96174 1.67486 1.16014 1.36258 0.98522 1.20822 1.01531 0.93197 0.91527 1.18545 0.76941 0.82113 0.88219 1.90717 1.54118 1.68446 1.32299 1.48134 1.63605 1.07322 1.12558 1.23001 1.00537 0.93726 0.86450 1.21959 0.98639 0.97107 0.98570 1.21793 1.00349 0.97806 0.95337 1.20492 0.93851 0.90209 0.88036 0.94711 1.43915 1.20915 1.56040 1.09448 1.19119 0.89794 1.00611 1.28209 0.92673 1.25598 0.99821 0.95102 1.03012 1.70059 1.30805 1.11856 1.43492 0.85486 0.81430 0.76570 0.78314 1.21408 1.22020 1.19834 1.21143 0.92286 0.97461 0.87711 1.22814 0.97428 0.85085 0.95823 1.86571 1.84968 1.16204 1.50560 1.21951 0.97301 0.94738 0.86747 1.22013 0.97986 0.93712 1.00593 0.93989 0.90516 0.91690 0.90511 0.87731 0.80238 0.78315 0.82730 0.91884 0.92788 0.88616 0.93140 0.94378 0.93846 0.96191 0.88811 0.93397 0.95467 0.77527 0.90792 0.93383 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.90 71.98 0.71 -0.65 16 2 C -0.08 -0.81 6.11 29.85 0.18 -0.63 16 3 C -0.04 -0.66 5.17 -19.69 -0.10 -0.76 16 4 C -0.13 -1.45 9.82 22.44 0.22 -1.23 16 5 C 0.09 1.33 11.18 84.82 0.95 2.27 16 6 N -0.47 -10.95 6.19 -184.90 -1.15 -12.10 16 7 C 0.06 1.86 6.56 41.91 0.27 2.13 16 8 C 0.55 20.90 7.64 86.88 0.66 21.56 16 9 O -0.58 -25.31 15.81 -3.74 -0.06 -25.37 16 10 N -0.59 -22.21 2.97 -821.96 -2.44 -24.65 16 11 C 0.08 2.61 5.83 86.36 0.50 3.12 16 12 C -0.12 -3.98 6.08 30.67 0.19 -3.79 16 13 C -0.11 -4.77 5.03 30.62 0.15 -4.62 16 14 C 0.18 8.43 2.39 45.07 0.11 8.54 16 15 H 0.03 1.71 7.77 -2.39 -0.02 1.69 16 16 N -0.58 -30.11 2.37 -677.63 -1.61 -31.72 16 17 C -0.25 -13.54 8.12 84.03 0.68 -12.85 16 18 H 0.06 3.06 6.99 -2.91 -0.02 3.04 16 19 C -0.04 -2.14 4.95 84.86 0.42 -1.72 16 20 N -0.92 -52.85 11.24 21.65 0.24 -52.60 16 21 Si 0.95 44.79 29.62 68.60 2.03 46.82 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 C 0.14 7.04 5.69 86.38 0.49 7.53 16 26 C 0.07 2.93 7.39 71.98 0.53 3.46 16 27 O -0.58 -23.99 12.04 -148.98 -1.79 -25.79 16 28 C 0.12 5.19 5.83 86.36 0.50 5.69 16 29 C -0.12 -2.90 9.34 22.61 0.21 -2.68 16 30 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 0.80 8.10 -2.39 -0.02 0.79 16 34 H 0.10 0.50 8.10 -2.39 -0.02 0.48 16 35 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 36 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.16 4.18 4.16 -53.32 -0.22 3.95 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.05 2.25 7.61 -2.39 -0.02 2.23 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 44 H 0.02 0.99 7.88 -2.39 -0.02 0.97 16 45 H 0.09 5.17 5.21 -2.39 -0.01 5.16 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.38 12.12 9.12 -74.06 -0.68 11.44 16 49 H 0.07 3.60 5.80 -2.39 -0.01 3.59 16 50 H 0.05 2.24 7.02 -2.39 -0.02 2.22 16 51 H 0.13 3.40 7.68 -2.91 -0.02 3.37 16 Total: -1.00 -73.32 401.71 1.97 -71.35 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.05 Total: 28.69 kcal Atomic # 6 Polarization: 18.68 SS G_CDS: 6.69 Total: 25.37 kcal Atomic # 7 Polarization: -116.12 SS G_CDS: -4.95 Total: -121.07 kcal Atomic # 8 Polarization: -49.31 SS G_CDS: -1.85 Total: -51.16 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -73.32 1.97 -71.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707214762.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.301 kcal (2) G-P(sol) polarization free energy of solvation -73.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds