Wall clock time and date at job start Wed Apr 1 2020 04:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47624 * 2 1 4 4 C 1.38360 * 120.26968 * 89.99443 * 3 2 1 5 5 N 1.31874 * 121.18214 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.80624 * 0.02616 * 5 4 3 7 7 O 1.35424 * 119.80393 * 179.97438 * 6 5 4 8 8 C 1.40283 * 120.39803 * 0.02562 * 6 5 4 9 9 C 1.47527 * 120.59634 * 179.97438 * 8 6 5 10 10 O 1.21590 * 119.99973 * 0.02562 * 9 8 6 11 11 N 1.34774 * 119.99844 * 179.97438 * 9 8 6 12 12 C 1.46503 * 119.99795 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46989 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47123 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46927 * 177.30235 * 14 13 12 16 16 H 1.09000 * 109.87573 * 306.77166 * 15 14 13 17 17 C 1.54325 * 109.88139 * 185.75457 * 15 14 13 18 18 C 1.55152 * 102.94151 * 218.39424 * 17 15 14 19 19 C 1.54908 * 101.58545 * 35.50327 * 18 17 15 20 20 N 1.47026 * 109.87978 * 67.79016 * 15 14 13 21 21 C 1.36938 * 125.64766 * 298.30862 * 20 15 14 22 22 H 1.08001 * 119.99818 * 343.50002 * 21 20 15 23 23 C 1.38811 * 119.99790 * 163.49677 * 21 20 15 24 24 N 1.31622 * 119.99807 * 161.45131 * 23 21 20 25 25 Si 1.86800 * 120.00219 * 341.45087 * 23 21 20 26 26 H 1.48505 * 109.46777 * 84.79809 * 25 23 21 27 27 H 1.48499 * 109.47169 * 204.79737 * 25 23 21 28 28 H 1.48503 * 109.47218 * 324.80042 * 25 23 21 29 29 C 1.38338 * 120.27190 * 269.72949 * 3 2 1 30 30 H 1.08997 * 109.47377 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46990 * 59.99920 * 1 2 3 32 32 H 1.08998 * 109.46787 * 299.99939 * 1 2 3 33 33 H 1.08998 * 109.47625 * 120.00772 * 2 1 3 34 34 H 1.09009 * 109.47111 * 240.00411 * 2 1 3 35 35 H 1.08001 * 119.40762 * 0.02562 * 4 3 2 36 36 H 0.96706 * 114.00286 * 90.00154 * 7 6 5 37 37 H 0.97000 * 120.00082 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.46797 * 300.00193 * 12 11 9 39 39 H 1.08995 * 109.46983 * 60.00270 * 12 11 9 40 40 H 1.08998 * 109.47106 * 300.00364 * 13 12 11 41 41 H 1.09005 * 109.46721 * 59.99962 * 13 12 11 42 42 H 1.08993 * 109.47023 * 297.30741 * 14 13 12 43 43 H 1.09004 * 109.46751 * 57.30452 * 14 13 12 44 44 H 1.09004 * 110.71791 * 336.75468 * 17 15 14 45 45 H 1.08999 * 110.72198 * 100.02689 * 17 15 14 46 46 H 1.08999 * 111.00300 * 153.57781 * 18 17 15 47 47 H 1.09001 * 111.00570 * 277.38781 * 18 17 15 48 48 H 1.08996 * 110.36998 * 81.82780 * 19 18 17 49 49 H 1.09001 * 110.36694 * 204.15562 * 19 18 17 50 50 H 0.97003 * 119.99561 * 179.97438 * 24 23 21 51 51 H 1.07998 * 120.82451 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2649 2.0783 1.1950 5 7 2.7050 3.3213 1.2160 6 6 2.9434 3.9951 0.1034 7 8 3.3943 5.2702 0.1723 8 6 2.7310 3.3974 -1.1478 9 6 2.9950 4.1453 -2.3917 10 8 3.4009 5.2902 -2.3383 11 7 2.7873 3.5591 -3.5874 12 6 3.0500 4.3016 -4.8227 13 6 2.7348 3.4137 -6.0283 14 6 3.0086 4.1893 -7.3183 15 6 2.7578 3.2800 -8.5230 16 1 3.3291 2.3578 -8.4165 17 6 3.1684 4.0048 -9.8221 18 6 2.0714 3.5647 -10.8272 19 6 0.8224 3.4948 -9.9135 20 7 1.3241 2.9710 -8.6263 21 6 0.5807 2.3087 -7.6860 22 1 1.0728 1.7372 -6.9130 23 6 -0.8054 2.3721 -7.7265 24 7 -1.5242 1.4766 -7.0833 25 14 -1.6506 3.7284 -8.6938 26 1 -1.7653 3.3230 -10.1178 27 1 -3.0063 3.9637 -8.1353 28 1 -0.8519 4.9767 -8.5973 29 6 2.2703 2.0764 -1.1947 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 2.0834 1.5642 2.1272 36 1 4.3582 5.3460 0.1924 37 1 2.4638 2.6456 -3.6301 38 1 2.4209 5.1912 -4.8527 39 1 4.0987 4.5970 -4.8530 40 1 3.3636 2.5238 -5.9984 41 1 1.6859 3.1186 -5.9977 42 1 2.3457 5.0529 -7.3707 43 1 4.0453 4.5259 -7.3268 44 1 3.1521 5.0857 -9.6823 45 1 4.1518 3.6726 -10.1547 46 1 1.9397 4.3091 -11.6125 47 1 2.3003 2.5876 -11.2524 48 1 0.3944 4.4881 -9.7792 49 1 0.0816 2.8153 -10.3350 50 1 -2.4928 1.5211 -7.1113 51 1 2.1008 1.5826 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713441772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:11 Heat of formation + Delta-G solvation = -26.803424 kcal Electronic energy + Delta-G solvation = -30653.284355 eV Core-core repulsion = 26553.275291 eV Total energy + Delta-G solvation = -4100.009064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.04593 -39.10660 -38.19414 -37.48363 -35.28199 -34.47339 -33.14477 -32.63771 -31.96311 -29.94921 -29.36022 -28.48416 -25.46343 -24.60015 -24.24517 -23.89516 -22.11033 -21.56102 -20.66870 -20.20254 -19.21809 -18.99286 -17.40540 -17.39240 -16.81241 -16.21353 -15.95485 -15.47079 -15.26445 -15.06806 -14.97746 -14.33625 -14.14849 -14.01318 -13.57741 -13.36691 -13.28292 -13.23699 -13.04172 -12.83096 -12.48214 -12.29169 -12.10885 -11.97813 -11.96547 -11.62605 -11.35700 -11.26567 -11.18170 -11.02184 -10.86069 -10.46348 -10.34473 -10.25465 -10.11254 -10.01989 -9.89043 -9.73153 -9.48260 -9.24971 -9.06993 -8.85435 -8.73893 -7.06171 -5.97134 -3.26684 0.38264 0.83844 2.78549 3.14975 3.32098 3.36109 3.45945 3.47389 3.63968 4.28348 4.39706 4.50539 4.51567 4.57684 4.88575 4.91118 5.03108 5.09085 5.15597 5.21341 5.25693 5.30833 5.41072 5.49533 5.51541 5.53700 5.60347 5.61341 5.70954 5.78666 5.94384 5.96386 6.00323 6.01318 6.09888 6.13531 6.17369 6.23322 6.28289 6.38969 6.42752 6.55646 6.65481 6.67230 6.79236 7.00970 7.06247 7.34182 7.55105 7.63550 7.68453 8.24531 8.26328 8.78615 9.66217 10.17909 11.18496 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.002739 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.451099 B =10219.363066 C =11631.593726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.079 4.079 3 C -0.151 4.151 4 C 0.147 3.853 5 N -0.506 5.506 6 C 0.361 3.639 7 O -0.459 6.459 8 C -0.197 4.197 9 C 0.559 3.441 10 O -0.526 6.526 11 N -0.718 5.718 12 C 0.123 3.877 13 C -0.143 4.143 14 C -0.116 4.116 15 C 0.162 3.838 16 H 0.042 0.958 17 C -0.127 4.127 18 C -0.132 4.132 19 C 0.101 3.899 20 N -0.605 5.605 21 C -0.234 4.234 22 H 0.098 0.902 23 C 0.018 3.982 24 N -0.914 5.914 25 Si 0.887 3.113 26 H -0.288 1.288 27 H -0.306 1.306 28 H -0.274 1.274 29 C -0.026 4.026 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.163 0.837 36 H 0.403 0.597 37 H 0.401 0.599 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.048 0.952 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.030 0.970 49 H 0.058 0.942 50 H 0.262 0.738 51 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.705 -1.908 10.470 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.153 4.153 4 C -0.011 4.011 5 N -0.224 5.224 6 C 0.181 3.819 7 O -0.267 6.267 8 C -0.203 4.203 9 C 0.344 3.656 10 O -0.403 6.403 11 N -0.370 5.370 12 C 0.000 4.000 13 C -0.181 4.181 14 C -0.156 4.156 15 C 0.055 3.945 16 H 0.060 0.940 17 C -0.165 4.165 18 C -0.170 4.170 19 C -0.024 4.024 20 N -0.331 5.331 21 C -0.361 4.361 22 H 0.116 0.884 23 C -0.180 4.180 24 N -0.559 5.559 25 Si 0.719 3.281 26 H -0.215 1.215 27 H -0.235 1.235 28 H -0.200 1.200 29 C -0.052 4.052 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.181 0.819 36 H 0.262 0.738 37 H 0.236 0.764 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.047 0.953 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.376 -0.542 11.355 15.392 hybrid contribution -0.551 -0.071 -1.287 1.401 sum 9.826 -0.612 10.069 14.082 Atomic orbital electron populations 1.21798 0.94085 1.02373 1.02639 1.20487 0.96621 0.90916 1.03627 1.20895 1.02030 0.98814 0.93558 1.22635 0.91892 0.88687 0.97875 1.67320 1.14974 1.08748 1.31401 1.19168 0.92068 0.84345 0.86323 1.84734 1.27664 1.18934 1.95330 1.21196 1.08572 0.95626 0.94934 1.17810 0.78528 0.86236 0.83012 1.90799 1.45429 1.16923 1.87138 1.45987 1.67387 1.17887 1.05705 1.21515 1.00433 0.95558 0.82522 1.22169 1.06155 0.97519 0.92230 1.21882 0.99366 0.99151 0.95174 1.20977 0.86560 0.94970 0.92005 0.94027 1.22607 0.98014 1.00035 0.95875 1.22706 0.96454 1.00752 0.97087 1.22125 0.95635 0.97529 0.87116 1.44947 1.04971 1.66611 1.16584 1.18630 0.88068 1.22060 1.07329 0.88412 1.24919 0.96010 0.98488 0.98576 1.69782 1.05651 1.34124 1.46309 0.87005 0.77983 0.84067 0.79056 1.21518 1.23467 1.20011 1.21731 0.92078 0.92174 0.99256 0.91829 0.91977 0.92550 0.90441 0.90241 0.81948 0.73764 0.76400 0.91642 0.92211 0.92480 0.86881 0.92155 0.93347 0.91695 0.91764 0.91960 0.91450 0.95276 0.92415 0.92816 0.83683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 37.16 0.37 -0.80 16 2 C -0.08 -0.55 6.08 -27.88 -0.17 -0.72 16 3 C -0.15 -1.39 5.14 -104.54 -0.54 -1.93 16 4 C 0.15 1.42 10.84 -17.49 -0.19 1.23 16 5 N -0.51 -6.37 10.37 -12.98 -0.13 -6.51 16 6 C 0.36 4.93 7.77 -16.61 -0.13 4.80 16 7 O -0.46 -6.32 11.66 -39.74 -0.46 -6.78 16 8 C -0.20 -2.60 5.90 -104.69 -0.62 -3.22 16 9 C 0.56 8.58 7.77 -12.47 -0.10 8.49 16 10 O -0.53 -9.59 15.19 -16.48 -0.25 -9.84 16 11 N -0.72 -10.21 5.51 -61.35 -0.34 -10.55 16 12 C 0.12 1.87 5.67 -4.04 -0.02 1.84 16 13 C -0.14 -2.33 4.64 -26.73 -0.12 -2.45 16 14 C -0.12 -1.90 4.72 -26.73 -0.13 -2.03 16 15 C 0.16 2.91 3.22 -66.95 -0.22 2.69 16 16 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 17 C -0.13 -1.93 6.48 -24.90 -0.16 -2.09 16 18 C -0.13 -2.14 7.08 -24.59 -0.17 -2.31 16 19 C 0.10 2.12 4.67 -2.35 -0.01 2.10 16 20 N -0.61 -13.49 2.99 -162.31 -0.48 -13.97 16 21 C -0.23 -6.01 8.39 -15.06 -0.13 -6.13 16 22 H 0.10 2.58 6.63 -52.49 -0.35 2.23 16 23 C 0.02 0.50 5.47 -17.43 -0.10 0.40 16 24 N -0.91 -26.73 13.97 55.49 0.78 -25.95 16 25 Si 0.89 22.20 24.24 -169.99 -4.12 18.08 16 26 H -0.29 -7.02 6.43 56.52 0.36 -6.66 16 27 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16 28 H -0.27 -6.77 6.21 56.52 0.35 -6.42 16 29 C -0.03 -0.28 9.31 -38.89 -0.36 -0.64 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 34 H 0.08 0.53 8.09 -51.92 -0.42 0.11 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.40 3.75 9.06 45.56 0.41 4.16 16 37 H 0.40 4.98 6.57 -40.82 -0.27 4.71 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.11 2.25 4.92 -51.93 -0.26 2.00 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 48 H 0.03 0.65 5.44 -51.93 -0.28 0.36 16 49 H 0.06 1.31 6.13 -51.93 -0.32 0.99 16 50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.15 1.32 6.52 -52.49 -0.34 0.98 16 LS Contribution 400.10 15.07 6.03 6.03 Total: -1.00 -33.45 400.10 -9.15 -42.60 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -7.37 Total: 7.65 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -2.79 Total: -0.77 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.18 Total: -56.98 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.71 Total: -16.62 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.12 Total: 18.08 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.45 -9.15 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713441772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.798 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds