Wall clock time and date at job start Wed Apr 1 2020 04:59:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50700 * 109.47624 * 2 1
4 4 C 1.38360 * 120.26968 * 89.99443 * 3 2 1
5 5 N 1.31874 * 121.18214 * 179.97438 * 4 3 2
6 6 C 1.32234 * 121.80624 * 0.02616 * 5 4 3
7 7 O 1.35424 * 119.80393 * 179.97438 * 6 5 4
8 8 C 1.40283 * 120.39803 * 0.02562 * 6 5 4
9 9 C 1.47527 * 120.59634 * 179.97438 * 8 6 5
10 10 O 1.21590 * 119.99973 * 0.02562 * 9 8 6
11 11 N 1.34774 * 119.99844 * 179.97438 * 9 8 6
12 12 C 1.46503 * 119.99795 * 180.02562 * 11 9 8
13 13 C 1.53004 * 109.46989 * 180.02562 * 12 11 9
14 14 C 1.52999 * 109.47123 * 179.97438 * 13 12 11
15 15 C 1.53000 * 109.46927 * 177.30235 * 14 13 12
16 16 H 1.09000 * 109.87573 * 306.77166 * 15 14 13
17 17 C 1.54325 * 109.88139 * 185.75457 * 15 14 13
18 18 C 1.55152 * 102.94151 * 218.39424 * 17 15 14
19 19 C 1.54908 * 101.58545 * 35.50327 * 18 17 15
20 20 N 1.47026 * 109.87978 * 67.79016 * 15 14 13
21 21 C 1.36938 * 125.64766 * 298.30862 * 20 15 14
22 22 H 1.08001 * 119.99818 * 343.50002 * 21 20 15
23 23 C 1.38811 * 119.99790 * 163.49677 * 21 20 15
24 24 N 1.31622 * 119.99807 * 161.45131 * 23 21 20
25 25 Si 1.86800 * 120.00219 * 341.45087 * 23 21 20
26 26 H 1.48505 * 109.46777 * 84.79809 * 25 23 21
27 27 H 1.48499 * 109.47169 * 204.79737 * 25 23 21
28 28 H 1.48503 * 109.47218 * 324.80042 * 25 23 21
29 29 C 1.38338 * 120.27190 * 269.72949 * 3 2 1
30 30 H 1.08997 * 109.47377 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46990 * 59.99920 * 1 2 3
32 32 H 1.08998 * 109.46787 * 299.99939 * 1 2 3
33 33 H 1.08998 * 109.47625 * 120.00772 * 2 1 3
34 34 H 1.09009 * 109.47111 * 240.00411 * 2 1 3
35 35 H 1.08001 * 119.40762 * 0.02562 * 4 3 2
36 36 H 0.96706 * 114.00286 * 90.00154 * 7 6 5
37 37 H 0.97000 * 120.00082 * 0.02562 * 11 9 8
38 38 H 1.09002 * 109.46797 * 300.00193 * 12 11 9
39 39 H 1.08995 * 109.46983 * 60.00270 * 12 11 9
40 40 H 1.08998 * 109.47106 * 300.00364 * 13 12 11
41 41 H 1.09005 * 109.46721 * 59.99962 * 13 12 11
42 42 H 1.08993 * 109.47023 * 297.30741 * 14 13 12
43 43 H 1.09004 * 109.46751 * 57.30452 * 14 13 12
44 44 H 1.09004 * 110.71791 * 336.75468 * 17 15 14
45 45 H 1.08999 * 110.72198 * 100.02689 * 17 15 14
46 46 H 1.08999 * 111.00300 * 153.57781 * 18 17 15
47 47 H 1.09001 * 111.00570 * 277.38781 * 18 17 15
48 48 H 1.08996 * 110.36998 * 81.82780 * 19 18 17
49 49 H 1.09001 * 110.36694 * 204.15562 * 19 18 17
50 50 H 0.97003 * 119.99561 * 179.97438 * 24 23 21
51 51 H 1.07998 * 120.82451 * 359.97438 * 29 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2649 2.0783 1.1950
5 7 2.7050 3.3213 1.2160
6 6 2.9434 3.9951 0.1034
7 8 3.3943 5.2702 0.1723
8 6 2.7310 3.3974 -1.1478
9 6 2.9950 4.1453 -2.3917
10 8 3.4009 5.2902 -2.3383
11 7 2.7873 3.5591 -3.5874
12 6 3.0500 4.3016 -4.8227
13 6 2.7348 3.4137 -6.0283
14 6 3.0086 4.1893 -7.3183
15 6 2.7578 3.2800 -8.5230
16 1 3.3291 2.3578 -8.4165
17 6 3.1684 4.0048 -9.8221
18 6 2.0714 3.5647 -10.8272
19 6 0.8224 3.4948 -9.9135
20 7 1.3241 2.9710 -8.6263
21 6 0.5807 2.3087 -7.6860
22 1 1.0728 1.7372 -6.9130
23 6 -0.8054 2.3721 -7.7265
24 7 -1.5242 1.4766 -7.0833
25 14 -1.6506 3.7284 -8.6938
26 1 -1.7653 3.3230 -10.1178
27 1 -3.0063 3.9637 -8.1353
28 1 -0.8519 4.9767 -8.5973
29 6 2.2703 2.0764 -1.1947
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 0.5138 0.8900
33 1 1.8934 -0.5139 0.8899
34 1 1.8933 -0.5138 -0.8901
35 1 2.0834 1.5642 2.1272
36 1 4.3582 5.3460 0.1924
37 1 2.4638 2.6456 -3.6301
38 1 2.4209 5.1912 -4.8527
39 1 4.0987 4.5970 -4.8530
40 1 3.3636 2.5238 -5.9984
41 1 1.6859 3.1186 -5.9977
42 1 2.3457 5.0529 -7.3707
43 1 4.0453 4.5259 -7.3268
44 1 3.1521 5.0857 -9.6823
45 1 4.1518 3.6726 -10.1547
46 1 1.9397 4.3091 -11.6125
47 1 2.3003 2.5876 -11.2524
48 1 0.3944 4.4881 -9.7792
49 1 0.0816 2.8153 -10.3350
50 1 -2.4928 1.5211 -7.1113
51 1 2.1008 1.5826 -2.1402
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713441772.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:59:11
Heat of formation + Delta-G solvation = -26.803424 kcal
Electronic energy + Delta-G solvation = -30653.284355 eV
Core-core repulsion = 26553.275291 eV
Total energy + Delta-G solvation = -4100.009064 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.04593 -39.10660 -38.19414 -37.48363 -35.28199 -34.47339 -33.14477 -32.63771
-31.96311 -29.94921 -29.36022 -28.48416 -25.46343 -24.60015 -24.24517 -23.89516
-22.11033 -21.56102 -20.66870 -20.20254 -19.21809 -18.99286 -17.40540 -17.39240
-16.81241 -16.21353 -15.95485 -15.47079 -15.26445 -15.06806 -14.97746 -14.33625
-14.14849 -14.01318 -13.57741 -13.36691 -13.28292 -13.23699 -13.04172 -12.83096
-12.48214 -12.29169 -12.10885 -11.97813 -11.96547 -11.62605 -11.35700 -11.26567
-11.18170 -11.02184 -10.86069 -10.46348 -10.34473 -10.25465 -10.11254 -10.01989
-9.89043 -9.73153 -9.48260 -9.24971 -9.06993 -8.85435 -8.73893 -7.06171
-5.97134 -3.26684 0.38264 0.83844 2.78549 3.14975 3.32098 3.36109
3.45945 3.47389 3.63968 4.28348 4.39706 4.50539 4.51567 4.57684
4.88575 4.91118 5.03108 5.09085 5.15597 5.21341 5.25693 5.30833
5.41072 5.49533 5.51541 5.53700 5.60347 5.61341 5.70954 5.78666
5.94384 5.96386 6.00323 6.01318 6.09888 6.13531 6.17369 6.23322
6.28289 6.38969 6.42752 6.55646 6.65481 6.67230 6.79236 7.00970
7.06247 7.34182 7.55105 7.63550 7.68453 8.24531 8.26328 8.78615
9.66217 10.17909 11.18496
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011489 B = 0.002739 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2436.451099 B =10219.363066 C =11631.593726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.079 4.079
3 C -0.151 4.151
4 C 0.147 3.853
5 N -0.506 5.506
6 C 0.361 3.639
7 O -0.459 6.459
8 C -0.197 4.197
9 C 0.559 3.441
10 O -0.526 6.526
11 N -0.718 5.718
12 C 0.123 3.877
13 C -0.143 4.143
14 C -0.116 4.116
15 C 0.162 3.838
16 H 0.042 0.958
17 C -0.127 4.127
18 C -0.132 4.132
19 C 0.101 3.899
20 N -0.605 5.605
21 C -0.234 4.234
22 H 0.098 0.902
23 C 0.018 3.982
24 N -0.914 5.914
25 Si 0.887 3.113
26 H -0.288 1.288
27 H -0.306 1.306
28 H -0.274 1.274
29 C -0.026 4.026
30 H 0.063 0.937
31 H 0.061 0.939
32 H 0.055 0.945
33 H 0.077 0.923
34 H 0.079 0.921
35 H 0.163 0.837
36 H 0.403 0.597
37 H 0.401 0.599
38 H 0.065 0.935
39 H 0.060 0.940
40 H 0.056 0.944
41 H 0.113 0.887
42 H 0.060 0.940
43 H 0.048 0.952
44 H 0.064 0.936
45 H 0.064 0.936
46 H 0.062 0.938
47 H 0.067 0.933
48 H 0.030 0.970
49 H 0.058 0.942
50 H 0.262 0.738
51 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.705 -1.908 10.470 15.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.117 4.117
3 C -0.153 4.153
4 C -0.011 4.011
5 N -0.224 5.224
6 C 0.181 3.819
7 O -0.267 6.267
8 C -0.203 4.203
9 C 0.344 3.656
10 O -0.403 6.403
11 N -0.370 5.370
12 C 0.000 4.000
13 C -0.181 4.181
14 C -0.156 4.156
15 C 0.055 3.945
16 H 0.060 0.940
17 C -0.165 4.165
18 C -0.170 4.170
19 C -0.024 4.024
20 N -0.331 5.331
21 C -0.361 4.361
22 H 0.116 0.884
23 C -0.180 4.180
24 N -0.559 5.559
25 Si 0.719 3.281
26 H -0.215 1.215
27 H -0.235 1.235
28 H -0.200 1.200
29 C -0.052 4.052
30 H 0.082 0.918
31 H 0.080 0.920
32 H 0.074 0.926
33 H 0.096 0.904
34 H 0.098 0.902
35 H 0.181 0.819
36 H 0.262 0.738
37 H 0.236 0.764
38 H 0.084 0.916
39 H 0.078 0.922
40 H 0.075 0.925
41 H 0.131 0.869
42 H 0.078 0.922
43 H 0.067 0.933
44 H 0.083 0.917
45 H 0.082 0.918
46 H 0.080 0.920
47 H 0.085 0.915
48 H 0.047 0.953
49 H 0.076 0.924
50 H 0.072 0.928
51 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 10.376 -0.542 11.355 15.392
hybrid contribution -0.551 -0.071 -1.287 1.401
sum 9.826 -0.612 10.069 14.082
Atomic orbital electron populations
1.21798 0.94085 1.02373 1.02639 1.20487 0.96621 0.90916 1.03627
1.20895 1.02030 0.98814 0.93558 1.22635 0.91892 0.88687 0.97875
1.67320 1.14974 1.08748 1.31401 1.19168 0.92068 0.84345 0.86323
1.84734 1.27664 1.18934 1.95330 1.21196 1.08572 0.95626 0.94934
1.17810 0.78528 0.86236 0.83012 1.90799 1.45429 1.16923 1.87138
1.45987 1.67387 1.17887 1.05705 1.21515 1.00433 0.95558 0.82522
1.22169 1.06155 0.97519 0.92230 1.21882 0.99366 0.99151 0.95174
1.20977 0.86560 0.94970 0.92005 0.94027 1.22607 0.98014 1.00035
0.95875 1.22706 0.96454 1.00752 0.97087 1.22125 0.95635 0.97529
0.87116 1.44947 1.04971 1.66611 1.16584 1.18630 0.88068 1.22060
1.07329 0.88412 1.24919 0.96010 0.98488 0.98576 1.69782 1.05651
1.34124 1.46309 0.87005 0.77983 0.84067 0.79056 1.21518 1.23467
1.20011 1.21731 0.92078 0.92174 0.99256 0.91829 0.91977 0.92550
0.90441 0.90241 0.81948 0.73764 0.76400 0.91642 0.92211 0.92480
0.86881 0.92155 0.93347 0.91695 0.91764 0.91960 0.91450 0.95276
0.92415 0.92816 0.83683
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.17 9.90 37.16 0.37 -0.80 16
2 C -0.08 -0.55 6.08 -27.88 -0.17 -0.72 16
3 C -0.15 -1.39 5.14 -104.54 -0.54 -1.93 16
4 C 0.15 1.42 10.84 -17.49 -0.19 1.23 16
5 N -0.51 -6.37 10.37 -12.98 -0.13 -6.51 16
6 C 0.36 4.93 7.77 -16.61 -0.13 4.80 16
7 O -0.46 -6.32 11.66 -39.74 -0.46 -6.78 16
8 C -0.20 -2.60 5.90 -104.69 -0.62 -3.22 16
9 C 0.56 8.58 7.77 -12.47 -0.10 8.49 16
10 O -0.53 -9.59 15.19 -16.48 -0.25 -9.84 16
11 N -0.72 -10.21 5.51 -61.35 -0.34 -10.55 16
12 C 0.12 1.87 5.67 -4.04 -0.02 1.84 16
13 C -0.14 -2.33 4.64 -26.73 -0.12 -2.45 16
14 C -0.12 -1.90 4.72 -26.73 -0.13 -2.03 16
15 C 0.16 2.91 3.22 -66.95 -0.22 2.69 16
16 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
17 C -0.13 -1.93 6.48 -24.90 -0.16 -2.09 16
18 C -0.13 -2.14 7.08 -24.59 -0.17 -2.31 16
19 C 0.10 2.12 4.67 -2.35 -0.01 2.10 16
20 N -0.61 -13.49 2.99 -162.31 -0.48 -13.97 16
21 C -0.23 -6.01 8.39 -15.06 -0.13 -6.13 16
22 H 0.10 2.58 6.63 -52.49 -0.35 2.23 16
23 C 0.02 0.50 5.47 -17.43 -0.10 0.40 16
24 N -0.91 -26.73 13.97 55.49 0.78 -25.95 16
25 Si 0.89 22.20 24.24 -169.99 -4.12 18.08 16
26 H -0.29 -7.02 6.43 56.52 0.36 -6.66 16
27 H -0.31 -7.90 7.11 56.52 0.40 -7.50 16
28 H -0.27 -6.77 6.21 56.52 0.35 -6.42 16
29 C -0.03 -0.28 9.31 -38.89 -0.36 -0.64 16
30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16
33 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16
34 H 0.08 0.53 8.09 -51.92 -0.42 0.11 16
35 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16
36 H 0.40 3.75 9.06 45.56 0.41 4.16 16
37 H 0.40 4.98 6.57 -40.82 -0.27 4.71 16
38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16
39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
40 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
41 H 0.11 2.25 4.92 -51.93 -0.26 2.00 16
42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
44 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16
45 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16
47 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16
48 H 0.03 0.65 5.44 -51.93 -0.28 0.36 16
49 H 0.06 1.31 6.13 -51.93 -0.32 0.99 16
50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16
51 H 0.15 1.32 6.52 -52.49 -0.34 0.98 16
LS Contribution 400.10 15.07 6.03 6.03
Total: -1.00 -33.45 400.10 -9.15 -42.60
By element:
Atomic # 1 Polarization: 15.02 SS G_CDS: -7.37 Total: 7.65 kcal
Atomic # 6 Polarization: 2.03 SS G_CDS: -2.79 Total: -0.77 kcal
Atomic # 7 Polarization: -56.80 SS G_CDS: -0.18 Total: -56.98 kcal
Atomic # 8 Polarization: -15.91 SS G_CDS: -0.71 Total: -16.62 kcal
Atomic # 14 Polarization: 22.20 SS G_CDS: -4.12 Total: 18.08 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -33.45 -9.15 -42.60 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713441772.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.798 kcal
(2) G-P(sol) polarization free energy of solvation -33.452 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.803 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.90 seconds