Wall clock time and date at job start Wed Apr 1 2020 04:59:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50700 * 109.47624 * 2 1
4 4 C 1.38360 * 120.26968 * 89.99443 * 3 2 1
5 5 N 1.31874 * 121.18214 * 179.97438 * 4 3 2
6 6 C 1.32234 * 121.80624 * 0.02616 * 5 4 3
7 7 O 1.35424 * 119.80393 * 179.97438 * 6 5 4
8 8 C 1.40283 * 120.39803 * 0.02562 * 6 5 4
9 9 C 1.47527 * 120.59634 * 179.97438 * 8 6 5
10 10 O 1.21590 * 119.99973 * 0.02562 * 9 8 6
11 11 N 1.34774 * 119.99844 * 179.97438 * 9 8 6
12 12 C 1.46503 * 119.99795 * 180.02562 * 11 9 8
13 13 C 1.53004 * 109.46989 * 180.02562 * 12 11 9
14 14 C 1.52999 * 109.47123 * 179.97438 * 13 12 11
15 15 C 1.53000 * 109.46927 * 177.30235 * 14 13 12
16 16 H 1.09000 * 109.87573 * 306.77166 * 15 14 13
17 17 C 1.54325 * 109.88139 * 185.75457 * 15 14 13
18 18 C 1.55152 * 102.94151 * 218.39424 * 17 15 14
19 19 C 1.54908 * 101.58545 * 35.50327 * 18 17 15
20 20 N 1.47026 * 109.87978 * 67.79016 * 15 14 13
21 21 C 1.36938 * 125.64766 * 298.30862 * 20 15 14
22 22 H 1.08001 * 119.99818 * 343.50002 * 21 20 15
23 23 C 1.38811 * 119.99790 * 163.49677 * 21 20 15
24 24 N 1.31622 * 119.99807 * 161.45131 * 23 21 20
25 25 Si 1.86800 * 120.00219 * 341.45087 * 23 21 20
26 26 H 1.48505 * 109.46777 * 84.79809 * 25 23 21
27 27 H 1.48499 * 109.47169 * 204.79737 * 25 23 21
28 28 H 1.48503 * 109.47218 * 324.80042 * 25 23 21
29 29 C 1.38338 * 120.27190 * 269.72949 * 3 2 1
30 30 H 1.08997 * 109.47377 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.46990 * 59.99920 * 1 2 3
32 32 H 1.08998 * 109.46787 * 299.99939 * 1 2 3
33 33 H 1.08998 * 109.47625 * 120.00772 * 2 1 3
34 34 H 1.09009 * 109.47111 * 240.00411 * 2 1 3
35 35 H 1.08001 * 119.40762 * 0.02562 * 4 3 2
36 36 H 0.96706 * 114.00286 * 90.00154 * 7 6 5
37 37 H 0.97000 * 120.00082 * 0.02562 * 11 9 8
38 38 H 1.09002 * 109.46797 * 300.00193 * 12 11 9
39 39 H 1.08995 * 109.46983 * 60.00270 * 12 11 9
40 40 H 1.08998 * 109.47106 * 300.00364 * 13 12 11
41 41 H 1.09005 * 109.46721 * 59.99962 * 13 12 11
42 42 H 1.08993 * 109.47023 * 297.30741 * 14 13 12
43 43 H 1.09004 * 109.46751 * 57.30452 * 14 13 12
44 44 H 1.09004 * 110.71791 * 336.75468 * 17 15 14
45 45 H 1.08999 * 110.72198 * 100.02689 * 17 15 14
46 46 H 1.08999 * 111.00300 * 153.57781 * 18 17 15
47 47 H 1.09001 * 111.00570 * 277.38781 * 18 17 15
48 48 H 1.08996 * 110.36998 * 81.82780 * 19 18 17
49 49 H 1.09001 * 110.36694 * 204.15562 * 19 18 17
50 50 H 0.97003 * 119.99561 * 179.97438 * 24 23 21
51 51 H 1.07998 * 120.82451 * 359.97438 * 29 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 6 2.2649 2.0783 1.1950
5 7 2.7050 3.3213 1.2160
6 6 2.9434 3.9951 0.1034
7 8 3.3943 5.2702 0.1723
8 6 2.7310 3.3974 -1.1478
9 6 2.9950 4.1453 -2.3917
10 8 3.4009 5.2902 -2.3383
11 7 2.7873 3.5591 -3.5874
12 6 3.0500 4.3016 -4.8227
13 6 2.7348 3.4137 -6.0283
14 6 3.0086 4.1893 -7.3183
15 6 2.7578 3.2800 -8.5230
16 1 3.3291 2.3578 -8.4165
17 6 3.1684 4.0048 -9.8221
18 6 2.0714 3.5647 -10.8272
19 6 0.8224 3.4948 -9.9135
20 7 1.3241 2.9710 -8.6263
21 6 0.5807 2.3087 -7.6860
22 1 1.0728 1.7372 -6.9130
23 6 -0.8054 2.3721 -7.7265
24 7 -1.5242 1.4766 -7.0833
25 14 -1.6506 3.7284 -8.6938
26 1 -1.7653 3.3230 -10.1178
27 1 -3.0063 3.9637 -8.1353
28 1 -0.8519 4.9767 -8.5973
29 6 2.2703 2.0764 -1.1947
30 1 -0.3634 -1.0276 -0.0005
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 0.5138 0.8900
33 1 1.8934 -0.5139 0.8899
34 1 1.8933 -0.5138 -0.8901
35 1 2.0834 1.5642 2.1272
36 1 4.3582 5.3460 0.1924
37 1 2.4638 2.6456 -3.6301
38 1 2.4209 5.1912 -4.8527
39 1 4.0987 4.5970 -4.8530
40 1 3.3636 2.5238 -5.9984
41 1 1.6859 3.1186 -5.9977
42 1 2.3457 5.0529 -7.3707
43 1 4.0453 4.5259 -7.3268
44 1 3.1521 5.0857 -9.6823
45 1 4.1518 3.6726 -10.1547
46 1 1.9397 4.3091 -11.6125
47 1 2.3003 2.5876 -11.2524
48 1 0.3944 4.4881 -9.7792
49 1 0.0816 2.8153 -10.3350
50 1 -2.4928 1.5211 -7.1113
51 1 2.1008 1.5826 -2.1402
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713441772.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:59:10
Heat of formation + Delta-G solvation = -51.487688 kcal
Electronic energy + Delta-G solvation = -30654.354745 eV
Core-core repulsion = 26553.275291 eV
Total energy + Delta-G solvation = -4101.079454 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.00020 -40.27461 -39.68456 -38.42847 -36.58481 -35.22807 -34.57918 -34.28844
-33.06374 -31.71497 -30.19660 -29.78990 -26.71498 -26.13160 -25.23305 -24.98520
-23.30752 -22.75801 -21.97052 -21.32953 -20.73175 -19.95122 -18.83134 -18.38947
-18.26861 -17.48128 -17.15904 -16.96160 -16.60509 -16.45831 -15.83703 -15.42705
-15.34921 -14.99360 -14.84711 -14.78832 -14.38972 -14.37536 -14.28211 -14.02191
-13.84371 -13.64470 -13.42323 -13.11638 -13.04863 -12.83079 -12.73311 -12.60719
-12.43025 -12.36476 -12.08300 -11.85389 -11.82805 -11.54993 -11.45972 -11.35656
-11.18193 -11.04527 -11.04154 -10.71555 -10.48510 -10.19395 -9.81999 -8.95099
-8.08014 -5.30848 -0.53732 -0.02250 1.29390 1.39447 1.44221 1.71751
2.02532 2.44969 2.46010 2.69896 3.16232 3.37193 3.41384 3.59958
3.66184 3.79617 3.86740 3.96936 4.07534 4.15470 4.18087 4.25404
4.26682 4.45338 4.46829 4.50806 4.53586 4.65763 4.68595 4.77538
4.80029 4.82083 4.85462 4.90251 4.96604 5.02878 5.15121 5.15356
5.19573 5.27448 5.32381 5.34382 5.37240 5.39602 5.47462 5.60567
5.65022 5.82297 6.19852 6.37976 6.50996 6.75577 6.85777 7.06659
7.65376 8.23696 9.10959
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.011489 B = 0.002739 C = 0.002407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2436.451099 B =10219.363066 C =11631.593726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.074 4.074
3 C -0.142 4.142
4 C 0.152 3.848
5 N -0.524 5.524
6 C 0.346 3.654
7 O -0.479 6.479
8 C -0.215 4.215
9 C 0.557 3.443
10 O -0.561 6.561
11 N -0.713 5.713
12 C 0.132 3.868
13 C -0.131 4.131
14 C -0.112 4.112
15 C 0.151 3.849
16 H 0.045 0.955
17 C -0.117 4.117
18 C -0.121 4.121
19 C 0.089 3.911
20 N -0.622 5.622
21 C -0.199 4.199
22 H 0.086 0.914
23 C -0.041 4.041
24 N -0.959 5.959
25 Si 0.932 3.068
26 H -0.281 1.281
27 H -0.322 1.322
28 H -0.271 1.271
29 C -0.028 4.028
30 H 0.074 0.926
31 H 0.039 0.961
32 H 0.059 0.941
33 H 0.105 0.895
34 H 0.085 0.915
35 H 0.200 0.800
36 H 0.416 0.584
37 H 0.409 0.591
38 H 0.045 0.955
39 H 0.073 0.927
40 H 0.070 0.930
41 H 0.073 0.927
42 H 0.041 0.959
43 H 0.083 0.917
44 H 0.075 0.925
45 H 0.098 0.902
46 H 0.090 0.910
47 H 0.074 0.926
48 H 0.020 0.980
49 H 0.034 0.966
50 H 0.255 0.745
51 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.892 -2.501 10.122 16.581
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.112 4.112
3 C -0.144 4.144
4 C -0.005 4.005
5 N -0.243 5.243
6 C 0.166 3.834
7 O -0.288 6.288
8 C -0.222 4.222
9 C 0.345 3.655
10 O -0.441 6.441
11 N -0.365 5.365
12 C 0.008 3.992
13 C -0.168 4.168
14 C -0.151 4.151
15 C 0.046 3.954
16 H 0.063 0.937
17 C -0.155 4.155
18 C -0.159 4.159
19 C -0.035 4.035
20 N -0.348 5.348
21 C -0.328 4.328
22 H 0.103 0.897
23 C -0.235 4.235
24 N -0.608 5.608
25 Si 0.765 3.235
26 H -0.207 1.207
27 H -0.252 1.252
28 H -0.197 1.197
29 C -0.053 4.053
30 H 0.093 0.907
31 H 0.058 0.942
32 H 0.078 0.922
33 H 0.123 0.877
34 H 0.103 0.897
35 H 0.217 0.783
36 H 0.278 0.722
37 H 0.246 0.754
38 H 0.063 0.937
39 H 0.091 0.909
40 H 0.089 0.911
41 H 0.091 0.909
42 H 0.060 0.940
43 H 0.102 0.898
44 H 0.094 0.906
45 H 0.117 0.883
46 H 0.108 0.892
47 H 0.093 0.907
48 H 0.038 0.962
49 H 0.053 0.947
50 H 0.064 0.936
51 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 12.614 -1.125 10.964 16.751
hybrid contribution -1.137 0.036 -1.123 1.599
sum 11.477 -1.089 9.841 15.158
Atomic orbital electron populations
1.21809 0.94664 1.02835 1.01728 1.20557 0.95878 0.89421 1.05351
1.21175 1.00689 0.99807 0.92752 1.23303 0.89943 0.87747 0.99528
1.67382 1.15912 1.10019 1.30945 1.19314 0.92769 0.84444 0.86846
1.84676 1.29092 1.19639 1.95421 1.21046 1.10724 0.96648 0.93763
1.18147 0.77705 0.85939 0.83752 1.90766 1.47212 1.18434 1.87675
1.45936 1.67076 1.18190 1.05310 1.21348 1.00662 0.94632 0.82535
1.21951 1.03696 0.98240 0.92950 1.21828 1.01022 0.98008 0.94269
1.21273 0.83801 0.95871 0.94479 0.93691 1.22625 0.99120 1.00375
0.93400 1.22676 0.93935 1.02260 0.97038 1.22214 0.97679 0.96091
0.87537 1.45171 1.06727 1.66326 1.16586 1.18706 0.87997 1.19748
1.06344 0.89687 1.25385 0.97009 1.00426 1.00652 1.69883 1.05305
1.36169 1.49458 0.86256 0.76384 0.82474 0.78402 1.20743 1.25164
1.19690 1.21941 0.91496 0.91275 1.00636 0.90726 0.94211 0.92173
0.87651 0.89668 0.78345 0.72248 0.75431 0.93701 0.90884 0.91132
0.90878 0.93969 0.89822 0.90629 0.88346 0.89151 0.90738 0.96235
0.94729 0.93558 0.82556
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.09 9.90 71.98 0.71 -1.38 16
2 C -0.07 -0.83 6.08 29.85 0.18 -0.65 16
3 C -0.14 -2.35 5.14 -19.81 -0.10 -2.45 16
4 C 0.15 2.62 10.84 84.72 0.92 3.53 16
5 N -0.52 -12.75 10.37 -308.00 -3.19 -15.94 16
6 C 0.35 9.53 7.77 85.13 0.66 10.19 16
7 O -0.48 -13.63 11.66 -66.38 -0.77 -14.40 16
8 C -0.22 -5.75 5.90 -19.91 -0.12 -5.87 16
9 C 0.56 17.49 7.77 86.69 0.67 18.16 16
10 O -0.56 -21.04 15.19 16.82 0.26 -20.79 16
11 N -0.71 -20.46 5.51 -466.27 -2.57 -23.02 16
12 C 0.13 3.97 5.67 86.38 0.49 4.47 16
13 C -0.13 -4.16 4.64 30.60 0.14 -4.02 16
14 C -0.11 -3.43 4.72 30.59 0.14 -3.29 16
15 C 0.15 5.05 3.22 45.34 0.15 5.20 16
16 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
17 C -0.12 -3.04 6.48 31.78 0.21 -2.84 16
18 C -0.12 -3.49 7.08 31.98 0.23 -3.27 16
19 C 0.09 3.63 4.67 86.79 0.41 4.04 16
20 N -0.62 -27.21 2.99 -667.43 -1.99 -29.21 16
21 C -0.20 -10.37 8.39 84.03 0.70 -9.66 16
22 H 0.09 4.58 6.63 -2.91 -0.02 4.56 16
23 C -0.04 -2.34 5.47 84.86 0.46 -1.88 16
24 N -0.96 -58.21 13.97 21.65 0.30 -57.90 16
25 Si 0.93 47.05 24.24 68.60 1.66 48.71 16
26 H -0.28 -13.59 6.43 99.48 0.64 -12.95 16
27 H -0.32 -16.88 7.11 99.48 0.71 -16.17 16
28 H -0.27 -13.29 6.21 99.48 0.62 -12.67 16
29 C -0.03 -0.57 9.31 22.72 0.21 -0.36 16
30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
31 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16
32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
33 H 0.11 0.66 8.09 -2.39 -0.02 0.64 16
34 H 0.08 0.91 8.09 -2.38 -0.02 0.89 16
35 H 0.20 1.84 8.06 -2.91 -0.02 1.82 16
36 H 0.42 8.20 9.06 -74.05 -0.67 7.53 16
37 H 0.41 10.22 6.57 -92.71 -0.61 9.61 16
38 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16
41 H 0.07 2.97 4.92 -2.38 -0.01 2.95 16
42 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16
43 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
44 H 0.08 1.84 7.85 -2.38 -0.02 1.82 16
45 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16
46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16
47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16
48 H 0.02 0.85 5.44 -2.39 -0.01 0.84 16
49 H 0.03 1.55 6.13 -2.39 -0.01 1.54 16
50 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16
51 H 0.16 2.76 6.52 -2.91 -0.02 2.74 16
Total: -1.00 -75.54 400.10 -0.72 -76.26
By element:
Atomic # 1 Polarization: 26.86 SS G_CDS: -0.48 Total: 26.38 kcal
Atomic # 6 Polarization: 3.85 SS G_CDS: 6.07 Total: 9.91 kcal
Atomic # 7 Polarization: -118.62 SS G_CDS: -7.45 Total: -126.08 kcal
Atomic # 8 Polarization: -34.67 SS G_CDS: -0.52 Total: -35.19 kcal
Atomic # 14 Polarization: 47.05 SS G_CDS: 1.66 Total: 48.71 kcal
Total: -75.54 -0.72 -76.26 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713441772.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.775 kcal
(2) G-P(sol) polarization free energy of solvation -75.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.767 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.262 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.488 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds