Wall clock time and date at job start Wed Apr 1 2020 04:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47098 * 2 1 4 4 C 1.38360 * 120.27200 * 269.97643 * 3 2 1 5 5 N 1.31880 * 121.18643 * 180.02562 * 4 3 2 6 6 C 1.32233 * 121.79968 * 359.65849 * 5 4 3 7 7 O 1.35432 * 119.80199 * 180.31159 * 6 5 4 8 8 C 1.40280 * 120.39956 * 0.63161 * 6 5 4 9 9 C 1.47530 * 120.59731 * 179.68082 * 8 6 5 10 10 O 1.21585 * 119.99735 * 322.03776 * 9 8 6 11 11 N 1.34774 * 119.99793 * 142.02747 * 9 8 6 12 12 C 1.46923 * 120.63191 * 354.70390 * 11 9 8 13 13 C 1.53196 * 108.77600 * 233.57834 * 12 11 9 14 14 C 1.53040 * 109.31385 * 305.37027 * 13 12 11 15 15 C 1.53036 * 109.54321 * 61.35919 * 14 13 12 16 16 H 1.09010 * 109.49474 * 58.58584 * 15 14 13 17 17 C 1.52997 * 109.50396 * 178.68357 * 15 14 13 18 18 H 1.09007 * 109.46862 * 60.00170 * 17 15 14 19 19 C 1.52998 * 109.47035 * 300.00297 * 17 15 14 20 20 N 1.46501 * 109.47533 * 180.02562 * 17 15 14 21 21 C 1.36929 * 119.99823 * 205.00026 * 20 17 15 22 22 H 1.07993 * 120.00513 * 0.02562 * 21 20 17 23 23 C 1.38820 * 119.99466 * 179.97438 * 21 20 17 24 24 N 1.31621 * 119.99511 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00168 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47436 * 89.99971 * 25 23 21 27 27 H 1.48505 * 109.46609 * 209.99891 * 25 23 21 28 28 H 1.48496 * 109.46785 * 329.99531 * 25 23 21 29 29 C 1.46925 * 120.62807 * 174.67276 * 11 9 8 30 30 C 1.38333 * 120.27415 * 90.00234 * 3 2 1 31 31 H 1.09004 * 109.47296 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46961 * 299.99966 * 1 2 3 33 33 H 1.08991 * 109.47539 * 59.99842 * 1 2 3 34 34 H 1.09003 * 109.46961 * 240.00034 * 2 1 3 35 35 H 1.09002 * 109.46879 * 119.99823 * 2 1 3 36 36 H 1.08005 * 119.40766 * 0.02831 * 4 3 2 37 37 H 0.96695 * 113.99929 * 270.31916 * 7 6 5 38 38 H 1.09003 * 109.58572 * 113.79661 * 12 11 9 39 39 H 1.08996 * 109.70633 * 353.43635 * 12 11 9 40 40 H 1.08999 * 109.50000 * 185.41325 * 13 12 11 41 41 H 1.09003 * 109.51882 * 65.33365 * 13 12 11 42 42 H 1.08992 * 109.45938 * 181.38705 * 14 13 12 43 43 H 1.09006 * 109.45575 * 301.33760 * 14 13 12 44 44 H 1.09003 * 109.47266 * 179.97438 * 19 17 15 45 45 H 1.08998 * 109.47261 * 299.99878 * 19 17 15 46 46 H 1.09004 * 109.47402 * 59.99701 * 19 17 15 47 47 H 0.96998 * 119.99453 * 24.99883 * 20 17 15 48 48 H 0.97004 * 119.99913 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.59354 * 246.20760 * 29 11 9 50 50 H 1.09006 * 109.58889 * 6.49106 * 29 11 9 51 51 H 1.08003 * 120.82336 * 359.95457 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2653 2.0782 -1.1949 5 7 2.7053 3.3212 -1.2160 6 6 2.9372 3.9972 -0.1034 7 8 3.3828 5.2743 -0.1723 8 6 2.7310 3.3974 1.1478 9 6 2.9950 4.1452 2.3918 10 8 3.9451 4.9011 2.4565 11 7 2.1830 3.9905 3.4562 12 6 0.9670 3.1719 3.3575 13 6 -0.2294 4.0081 3.8226 14 6 0.0489 4.5536 5.2251 15 6 1.2839 5.4566 5.1874 16 1 1.1161 6.2732 4.4851 17 6 1.5421 6.0275 6.5832 18 1 1.7112 5.2102 7.2844 19 6 0.3282 6.8428 7.0332 20 7 2.7240 6.8923 6.5462 21 6 3.4534 7.1039 7.6856 22 1 3.1576 6.6331 8.6114 23 6 4.5737 7.9230 7.6504 24 7 5.2750 8.1260 8.7455 25 14 5.0857 8.7368 6.0489 26 1 4.4215 10.0598 5.9315 27 1 6.5594 8.9199 6.0359 28 1 4.6834 7.8778 4.9065 29 6 2.4975 4.6368 4.7377 30 6 2.2648 2.0782 1.1947 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0834 1.5641 -2.1272 37 1 4.3462 5.3540 -0.1943 38 1 1.0665 2.2916 3.9926 39 1 0.8159 2.8614 2.3236 40 1 -1.1227 3.3838 3.8456 41 1 -0.3835 4.8383 3.1333 42 1 -0.8110 5.1285 5.5684 43 1 0.2268 3.7235 5.9089 44 1 0.5119 7.2492 8.0278 45 1 0.1590 7.6599 6.3320 46 1 -0.5516 6.1997 7.0607 47 1 2.9899 7.3149 5.7146 48 1 6.0577 8.6986 8.7210 49 1 2.7218 3.8760 5.4854 50 1 3.3590 5.2930 4.6144 51 1 2.0901 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715322248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:01 Heat of formation + Delta-G solvation = -28.857506 kcal Electronic energy + Delta-G solvation = -31791.524185 eV Core-core repulsion = 27691.426049 eV Total energy + Delta-G solvation = -4100.098135 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36307 -39.76946 -37.99571 -37.44502 -35.65876 -34.66479 -33.40780 -32.38337 -31.85349 -30.16597 -29.52233 -28.54335 -26.07112 -24.84328 -24.34532 -23.77931 -22.95655 -22.14985 -21.00047 -19.83375 -19.50308 -18.80131 -17.77732 -17.49509 -17.05274 -16.35412 -15.98951 -15.32732 -15.17205 -14.85964 -14.61470 -14.43878 -14.12318 -14.02211 -13.96528 -13.74415 -13.57743 -13.28762 -12.99888 -12.95695 -12.82190 -12.49608 -12.40965 -12.19511 -12.19165 -11.78403 -11.58105 -11.52093 -11.23278 -11.17057 -10.97186 -10.80934 -10.67674 -10.32850 -10.29688 -10.11469 -10.02357 -9.86895 -9.56235 -9.50363 -9.14532 -8.89796 -8.58907 -7.21908 -5.71914 -3.07161 0.31747 0.68480 2.58732 2.86427 3.18415 3.46592 3.47466 3.53700 3.56127 4.05254 4.19502 4.32815 4.37827 4.55211 4.62647 4.66921 4.80019 4.82855 4.85298 4.89965 5.00827 5.10624 5.19365 5.20865 5.30339 5.35511 5.39211 5.47097 5.52235 5.56535 5.61223 5.68165 5.70888 5.75446 5.80836 5.88552 6.01887 6.02196 6.04851 6.13427 6.29948 6.35038 6.39989 6.52714 6.59502 6.83324 7.02314 7.23822 7.33809 7.51937 8.03702 8.10053 8.47261 9.25958 9.99214 10.18606 11.46305 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.003171 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.676246 B = 8827.193256 C =10186.297840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.078 4.078 3 C -0.155 4.155 4 C 0.145 3.855 5 N -0.503 5.503 6 C 0.359 3.641 7 O -0.470 6.470 8 C -0.190 4.190 9 C 0.565 3.435 10 O -0.520 6.520 11 N -0.603 5.603 12 C 0.095 3.905 13 C -0.134 4.134 14 C -0.114 4.114 15 C -0.107 4.107 16 H 0.070 0.930 17 C 0.186 3.814 18 H 0.056 0.944 19 C -0.165 4.165 20 N -0.749 5.749 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.935 5.935 25 Si 0.878 3.122 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.271 1.271 29 C 0.122 3.878 30 C -0.032 4.032 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.163 0.837 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.041 0.959 47 H 0.362 0.638 48 H 0.259 0.741 49 H 0.071 0.929 50 H 0.103 0.897 51 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -19.849 -19.175 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.157 4.157 4 C -0.013 4.013 5 N -0.221 5.221 6 C 0.180 3.820 7 O -0.278 6.278 8 C -0.197 4.197 9 C 0.351 3.649 10 O -0.396 6.396 11 N -0.336 5.336 12 C -0.028 4.028 13 C -0.172 4.172 14 C -0.152 4.152 15 C -0.127 4.127 16 H 0.088 0.912 17 C 0.076 3.924 18 H 0.074 0.926 19 C -0.225 4.225 20 N -0.392 5.392 21 C -0.371 4.371 22 H 0.107 0.893 23 C -0.189 4.189 24 N -0.583 5.583 25 Si 0.708 3.292 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.197 1.197 29 C 0.001 3.999 30 C -0.058 4.058 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.180 0.820 37 H 0.271 0.729 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.121 0.879 51 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.776 -18.804 -19.642 30.043 hybrid contribution 0.741 0.328 -0.297 0.863 sum -12.035 -18.475 -19.938 29.727 Atomic orbital electron populations 1.21789 0.94266 1.02203 1.02458 1.20465 0.96398 0.91064 1.03658 1.20861 1.02751 0.98536 0.93580 1.22631 0.92041 0.88750 0.97853 1.67330 1.14650 1.08759 1.31318 1.19124 0.92154 0.84454 0.86271 1.84654 1.28683 1.19136 1.95343 1.21149 1.07641 0.96008 0.94905 1.17841 0.82952 0.81689 0.82370 1.90831 1.29671 1.36630 1.82467 1.48057 1.23619 1.50178 1.11761 1.22131 0.84682 0.93902 1.02045 1.21930 0.97052 1.00065 0.98185 1.21618 0.98353 0.99390 0.95836 1.21816 0.94115 0.97617 0.99180 0.91181 1.20140 0.87318 0.92537 0.92414 0.92618 1.22451 0.97956 1.00073 1.02031 1.42834 1.29752 1.57141 1.09470 1.19027 1.05114 1.24173 0.88765 0.89254 1.24637 0.97778 1.00058 0.96465 1.69702 1.19903 1.42331 1.26363 0.86633 0.77860 0.79904 0.84806 1.21250 1.21804 1.19687 1.21758 0.99294 0.96809 0.82073 1.21776 0.92466 0.92347 0.99203 0.91919 0.92390 0.92371 0.90305 0.90471 0.81968 0.72884 0.91028 0.89652 0.90776 0.91581 0.90943 0.91586 0.92352 0.93692 0.93961 0.80542 0.93137 0.91066 0.87898 0.83457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.89 37.16 0.37 -0.20 16 2 C -0.08 -0.33 6.08 -27.89 -0.17 -0.50 16 3 C -0.16 -1.10 5.14 -104.55 -0.54 -1.64 16 4 C 0.15 1.19 10.84 -17.49 -0.19 1.00 16 5 N -0.50 -5.87 10.37 -12.98 -0.13 -6.01 16 6 C 0.36 4.70 7.74 -16.61 -0.13 4.57 16 7 O -0.47 -6.54 12.29 -34.45 -0.42 -6.97 16 8 C -0.19 -2.35 5.24 -104.69 -0.55 -2.90 16 9 C 0.56 8.75 7.20 -12.47 -0.09 8.66 16 10 O -0.52 -10.17 15.50 -11.18 -0.17 -10.34 16 11 N -0.60 -8.26 2.97 -173.99 -0.52 -8.78 16 12 C 0.10 0.90 4.86 -3.71 -0.02 0.88 16 13 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 14 C -0.11 -1.29 4.85 -26.69 -0.13 -1.42 16 15 C -0.11 -1.64 1.97 -90.50 -0.18 -1.82 16 16 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 17 C 0.19 3.43 2.47 -67.93 -0.17 3.26 16 18 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 19 C -0.17 -2.81 9.14 37.16 0.34 -2.47 16 20 N -0.75 -17.67 4.33 -53.43 -0.23 -17.90 16 21 C -0.24 -6.78 10.41 -15.06 -0.16 -6.94 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 24 N -0.94 -29.82 13.97 55.49 0.78 -29.04 16 25 Si 0.88 23.19 27.74 -169.99 -4.71 18.47 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 27 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 28 H -0.27 -7.00 6.52 56.52 0.37 -6.63 16 29 C 0.12 1.98 5.48 -3.71 -0.02 1.96 16 30 C -0.03 -0.28 7.15 -38.89 -0.28 -0.56 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 35 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 36 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 37 H 0.41 4.34 9.06 45.56 0.41 4.75 16 38 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.09 0.71 4.56 -51.93 -0.24 0.47 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 47 H 0.36 8.75 5.49 -40.82 -0.22 8.52 16 48 H 0.26 7.90 8.31 -40.82 -0.34 7.57 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.10 2.10 6.52 -51.93 -0.34 1.76 16 51 H 0.15 1.01 6.36 -52.48 -0.33 0.68 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -36.21 400.92 -8.85 -45.06 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.31 Total: 8.89 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.16 Total: 0.58 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.11 Total: -61.73 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.60 Total: -17.31 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.71 Total: 18.47 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.21 -8.85 -45.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715322248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.199 kcal (2) G-P(sol) polarization free energy of solvation -36.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds