Wall clock time and date at job start Wed Apr 1 2020 04:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50693 * 109.47098 * 2 1 4 4 C 1.38360 * 120.27200 * 269.97643 * 3 2 1 5 5 N 1.31880 * 121.18643 * 180.02562 * 4 3 2 6 6 C 1.32233 * 121.79968 * 359.65849 * 5 4 3 7 7 O 1.35432 * 119.80199 * 180.31159 * 6 5 4 8 8 C 1.40280 * 120.39956 * 0.63161 * 6 5 4 9 9 C 1.47530 * 120.59731 * 179.68082 * 8 6 5 10 10 O 1.21585 * 119.99735 * 322.03776 * 9 8 6 11 11 N 1.34774 * 119.99793 * 142.02747 * 9 8 6 12 12 C 1.46923 * 120.63191 * 354.70390 * 11 9 8 13 13 C 1.53196 * 108.77600 * 233.57834 * 12 11 9 14 14 C 1.53040 * 109.31385 * 305.37027 * 13 12 11 15 15 C 1.53036 * 109.54321 * 61.35919 * 14 13 12 16 16 H 1.09010 * 109.49474 * 58.58584 * 15 14 13 17 17 C 1.52997 * 109.50396 * 178.68357 * 15 14 13 18 18 H 1.09007 * 109.46862 * 60.00170 * 17 15 14 19 19 C 1.52998 * 109.47035 * 300.00297 * 17 15 14 20 20 N 1.46501 * 109.47533 * 180.02562 * 17 15 14 21 21 C 1.36929 * 119.99823 * 205.00026 * 20 17 15 22 22 H 1.07993 * 120.00513 * 0.02562 * 21 20 17 23 23 C 1.38820 * 119.99466 * 179.97438 * 21 20 17 24 24 N 1.31621 * 119.99511 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00168 * 0.02562 * 23 21 20 26 26 H 1.48495 * 109.47436 * 89.99971 * 25 23 21 27 27 H 1.48505 * 109.46609 * 209.99891 * 25 23 21 28 28 H 1.48496 * 109.46785 * 329.99531 * 25 23 21 29 29 C 1.46925 * 120.62807 * 174.67276 * 11 9 8 30 30 C 1.38333 * 120.27415 * 90.00234 * 3 2 1 31 31 H 1.09004 * 109.47296 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46961 * 299.99966 * 1 2 3 33 33 H 1.08991 * 109.47539 * 59.99842 * 1 2 3 34 34 H 1.09003 * 109.46961 * 240.00034 * 2 1 3 35 35 H 1.09002 * 109.46879 * 119.99823 * 2 1 3 36 36 H 1.08005 * 119.40766 * 0.02831 * 4 3 2 37 37 H 0.96695 * 113.99929 * 270.31916 * 7 6 5 38 38 H 1.09003 * 109.58572 * 113.79661 * 12 11 9 39 39 H 1.08996 * 109.70633 * 353.43635 * 12 11 9 40 40 H 1.08999 * 109.50000 * 185.41325 * 13 12 11 41 41 H 1.09003 * 109.51882 * 65.33365 * 13 12 11 42 42 H 1.08992 * 109.45938 * 181.38705 * 14 13 12 43 43 H 1.09006 * 109.45575 * 301.33760 * 14 13 12 44 44 H 1.09003 * 109.47266 * 179.97438 * 19 17 15 45 45 H 1.08998 * 109.47261 * 299.99878 * 19 17 15 46 46 H 1.09004 * 109.47402 * 59.99701 * 19 17 15 47 47 H 0.96998 * 119.99453 * 24.99883 * 20 17 15 48 48 H 0.97004 * 119.99913 * 180.02562 * 24 23 21 49 49 H 1.09002 * 109.59354 * 246.20760 * 29 11 9 50 50 H 1.09006 * 109.58889 * 6.49106 * 29 11 9 51 51 H 1.08003 * 120.82336 * 359.95457 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2653 2.0782 -1.1949 5 7 2.7053 3.3212 -1.2160 6 6 2.9372 3.9972 -0.1034 7 8 3.3828 5.2743 -0.1723 8 6 2.7310 3.3974 1.1478 9 6 2.9950 4.1452 2.3918 10 8 3.9451 4.9011 2.4565 11 7 2.1830 3.9905 3.4562 12 6 0.9670 3.1719 3.3575 13 6 -0.2294 4.0081 3.8226 14 6 0.0489 4.5536 5.2251 15 6 1.2839 5.4566 5.1874 16 1 1.1161 6.2732 4.4851 17 6 1.5421 6.0275 6.5832 18 1 1.7112 5.2102 7.2844 19 6 0.3282 6.8428 7.0332 20 7 2.7240 6.8923 6.5462 21 6 3.4534 7.1039 7.6856 22 1 3.1576 6.6331 8.6114 23 6 4.5737 7.9230 7.6504 24 7 5.2750 8.1260 8.7455 25 14 5.0857 8.7368 6.0489 26 1 4.4215 10.0598 5.9315 27 1 6.5594 8.9199 6.0359 28 1 4.6834 7.8778 4.9065 29 6 2.4975 4.6368 4.7377 30 6 2.2648 2.0782 1.1947 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0834 1.5641 -2.1272 37 1 4.3462 5.3540 -0.1943 38 1 1.0665 2.2916 3.9926 39 1 0.8159 2.8614 2.3236 40 1 -1.1227 3.3838 3.8456 41 1 -0.3835 4.8383 3.1333 42 1 -0.8110 5.1285 5.5684 43 1 0.2268 3.7235 5.9089 44 1 0.5119 7.2492 8.0278 45 1 0.1590 7.6599 6.3320 46 1 -0.5516 6.1997 7.0607 47 1 2.9899 7.3149 5.7146 48 1 6.0577 8.6986 8.7210 49 1 2.7218 3.8760 5.4854 50 1 3.3590 5.2930 4.6144 51 1 2.0901 1.5863 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715322248.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:00 Heat of formation + Delta-G solvation = -56.062288 kcal Electronic energy + Delta-G solvation = -31792.703873 eV Core-core repulsion = 27691.426049 eV Total energy + Delta-G solvation = -4101.277823 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.24779 -40.78563 -39.14967 -38.43844 -37.10886 -35.24834 -34.85208 -33.64396 -33.11813 -31.72520 -30.21414 -29.91322 -27.07296 -26.05032 -25.14713 -24.91336 -24.26672 -22.91272 -22.13927 -21.32782 -20.48375 -19.68204 -19.60321 -18.51839 -18.06577 -17.28162 -16.96728 -16.78016 -16.38547 -15.96736 -15.90670 -15.45119 -15.20451 -14.98721 -14.76303 -14.64816 -14.45821 -14.44329 -14.30051 -14.21180 -14.01929 -13.86332 -13.47067 -13.26675 -13.05512 -12.90256 -12.87845 -12.61050 -12.39988 -12.30877 -12.22117 -12.00566 -11.87222 -11.79158 -11.73663 -11.45896 -11.33418 -11.24804 -11.02770 -10.79128 -10.47650 -9.89667 -9.68589 -9.31096 -8.04997 -5.34857 -0.48313 -0.03130 1.30870 1.35409 1.41494 1.53659 1.83998 2.36857 2.43713 2.67685 3.20697 3.27911 3.49404 3.60679 3.66074 3.74787 3.78511 3.89184 3.98187 4.06028 4.13949 4.21710 4.24636 4.37117 4.50748 4.53485 4.57089 4.58934 4.68653 4.70425 4.79033 4.82977 4.85704 4.88286 4.93188 4.98834 5.00751 5.12222 5.22260 5.24054 5.32011 5.34914 5.38246 5.44456 5.48696 5.53629 5.60063 5.77752 6.20879 6.25842 6.40005 6.74090 6.97624 7.06618 7.85227 8.01362 9.16863 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013684 B = 0.003171 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.676246 B = 8827.193256 C =10186.297840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.136 4.136 4 C 0.146 3.854 5 N -0.524 5.524 6 C 0.333 3.667 7 O -0.493 6.493 8 C -0.205 4.205 9 C 0.556 3.444 10 O -0.577 6.577 11 N -0.599 5.599 12 C 0.088 3.912 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.095 4.095 16 H 0.052 0.948 17 C 0.177 3.823 18 H 0.054 0.946 19 C -0.156 4.156 20 N -0.755 5.755 21 C -0.214 4.214 22 H 0.067 0.933 23 C -0.058 4.058 24 N -0.981 5.981 25 Si 0.939 3.061 26 H -0.280 1.280 27 H -0.297 1.297 28 H -0.269 1.269 29 C 0.125 3.875 30 C -0.026 4.026 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.197 0.803 37 H 0.416 0.584 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.114 0.886 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.032 0.968 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.358 0.642 48 H 0.256 0.744 49 H 0.077 0.923 50 H 0.052 0.948 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.347 -23.547 -21.072 35.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.138 4.138 4 C -0.012 4.012 5 N -0.242 5.242 6 C 0.155 3.845 7 O -0.303 6.303 8 C -0.212 4.212 9 C 0.345 3.655 10 O -0.458 6.458 11 N -0.330 5.330 12 C -0.033 4.033 13 C -0.166 4.166 14 C -0.146 4.146 15 C -0.115 4.115 16 H 0.071 0.929 17 C 0.069 3.931 18 H 0.072 0.928 19 C -0.215 4.215 20 N -0.398 5.398 21 C -0.345 4.345 22 H 0.085 0.915 23 C -0.249 4.249 24 N -0.633 5.633 25 Si 0.768 3.232 26 H -0.206 1.206 27 H -0.224 1.224 28 H -0.195 1.195 29 C 0.003 3.997 30 C -0.052 4.052 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.214 0.786 37 H 0.277 0.723 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.132 0.868 41 H 0.069 0.931 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.190 0.810 48 H 0.065 0.935 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -16.204 -22.552 -21.563 35.159 hybrid contribution 1.666 1.297 0.266 2.128 sum -14.538 -21.255 -21.297 33.417 Atomic orbital electron populations 1.21802 0.93650 1.02990 1.02325 1.20576 0.96692 0.88763 1.05231 1.21206 1.00491 0.99722 0.92332 1.23328 0.90362 0.87628 0.99897 1.67350 1.15677 1.10351 1.30852 1.19297 0.93597 0.84475 0.87141 1.84601 1.29449 1.20707 1.95532 1.20914 1.10011 0.97381 0.92874 1.18426 0.82291 0.81241 0.83537 1.90789 1.32147 1.39294 1.83551 1.48123 1.24682 1.49945 1.10273 1.22532 0.82634 0.94205 1.03914 1.21931 0.98380 1.00139 0.96185 1.21619 0.96063 0.99113 0.97825 1.21670 0.95900 0.97752 0.96173 0.92945 1.20458 0.85965 0.91908 0.94726 0.92794 1.22314 0.98621 1.00380 1.00228 1.42957 1.31064 1.57940 1.07791 1.19042 1.04419 1.21783 0.89228 0.91545 1.25262 0.98660 1.01912 0.99097 1.69838 1.20892 1.44207 1.28358 0.85644 0.76959 0.79096 0.81456 1.20630 1.22392 1.19515 1.21484 0.98083 0.96488 0.83647 1.22032 0.91464 0.90656 1.01009 0.90724 0.92458 0.92658 0.88526 0.89260 0.78600 0.72284 0.87962 0.88043 0.86790 0.93102 0.89762 0.89919 0.94838 0.93957 0.89724 0.80958 0.93505 0.90461 0.92886 0.81155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.89 71.98 0.71 0.27 16 2 C -0.07 -0.26 6.08 29.85 0.18 -0.08 16 3 C -0.14 -1.42 5.14 -19.81 -0.10 -1.52 16 4 C 0.15 1.97 10.84 84.71 0.92 2.89 16 5 N -0.52 -11.78 10.37 -307.99 -3.19 -14.98 16 6 C 0.33 8.88 7.74 85.13 0.66 9.54 16 7 O -0.49 -14.79 12.29 -71.54 -0.88 -15.67 16 8 C -0.21 -4.97 5.24 -19.91 -0.10 -5.07 16 9 C 0.56 17.68 7.20 86.69 0.62 18.30 16 10 O -0.58 -24.21 15.50 11.76 0.18 -24.02 16 11 N -0.60 -15.94 2.97 -822.65 -2.44 -18.39 16 12 C 0.09 1.34 4.86 86.36 0.42 1.76 16 13 C -0.13 -1.87 6.08 30.67 0.19 -1.69 16 14 C -0.11 -2.05 4.85 30.62 0.15 -1.90 16 15 C -0.09 -2.81 1.97 -10.72 -0.02 -2.83 16 16 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 17 C 0.18 6.47 2.47 44.99 0.11 6.58 16 18 H 0.05 2.00 8.08 -2.38 -0.02 1.98 16 19 C -0.16 -5.08 9.14 71.98 0.66 -4.42 16 20 N -0.75 -36.41 4.33 -322.94 -1.40 -37.81 16 21 C -0.21 -12.38 10.41 84.04 0.87 -11.51 16 22 H 0.07 4.12 8.06 -2.91 -0.02 4.09 16 23 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 24 N -0.98 -64.83 13.97 21.65 0.30 -64.53 16 25 Si 0.94 50.09 27.74 68.60 1.90 51.99 16 26 H -0.28 -14.52 7.11 99.48 0.71 -13.82 16 27 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 28 H -0.27 -14.14 6.52 99.48 0.65 -13.49 16 29 C 0.13 4.11 5.48 86.37 0.47 4.58 16 30 C -0.03 -0.38 7.15 22.72 0.16 -0.22 16 31 H 0.07 0.08 8.14 -2.38 -0.02 0.07 16 32 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.05 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.10 0.07 8.09 -2.39 -0.02 0.05 16 35 H 0.09 0.18 8.09 -2.39 -0.02 0.16 16 36 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.42 10.06 9.06 -74.06 -0.67 9.39 16 38 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 39 H 0.10 1.27 4.56 -2.39 -0.01 1.26 16 40 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.08 1.44 6.36 -2.39 -0.02 1.42 16 43 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 46 H 0.08 2.04 6.40 -2.38 -0.02 2.02 16 47 H 0.36 17.80 5.49 -92.71 -0.51 17.29 16 48 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 49 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 50 H 0.05 2.28 6.52 -2.38 -0.02 2.27 16 51 H 0.17 1.62 6.36 -2.91 -0.02 1.60 16 Total: -1.00 -85.56 400.92 0.56 -85.01 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: -0.28 Total: 26.80 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 6.37 Total: 11.60 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -6.73 Total: -135.70 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.70 Total: -39.69 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 1.90 Total: 51.99 kcal Total: -85.56 0.56 -85.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715322248.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.943 kcal (2) G-P(sol) polarization free energy of solvation -85.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds