Wall clock time and date at job start Wed Apr 1 2020 04:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46712 * 2 1 4 4 C 1.38352 * 120.26919 * 90.00241 * 3 2 1 5 5 N 1.31882 * 121.18727 * 180.02562 * 4 3 2 6 6 C 1.32243 * 121.79856 * 0.02562 * 5 4 3 7 7 O 1.35421 * 119.79988 * 179.97438 * 6 5 4 8 8 C 1.40278 * 120.39972 * 0.02562 * 6 5 4 9 9 C 1.47524 * 120.59850 * 179.97438 * 8 6 5 10 10 O 1.21588 * 120.00114 * 54.29691 * 9 8 6 11 11 N 1.34773 * 119.99985 * 234.02491 * 9 8 6 12 12 C 1.46930 * 120.63174 * 356.07768 * 11 9 8 13 13 C 1.53194 * 108.77677 * 126.36793 * 12 11 9 14 14 C 1.53041 * 109.31049 * 54.63555 * 13 12 11 15 15 C 1.53044 * 109.53733 * 298.63374 * 14 13 12 16 16 H 1.08997 * 109.49514 * 301.38046 * 15 14 13 17 17 C 1.53005 * 109.49676 * 181.31900 * 15 14 13 18 18 H 1.09000 * 109.47034 * 59.99957 * 17 15 14 19 19 C 1.53000 * 109.47185 * 300.00030 * 17 15 14 20 20 N 1.46494 * 109.47109 * 179.97438 * 17 15 14 21 21 C 1.36938 * 120.00058 * 205.00024 * 20 17 15 22 22 H 1.07997 * 119.99770 * 359.97438 * 21 20 17 23 23 C 1.38812 * 119.99920 * 180.02562 * 21 20 17 24 24 N 1.31618 * 120.00272 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99637 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47205 * 60.00063 * 25 23 21 27 27 H 1.48511 * 109.46918 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47328 * 299.99488 * 25 23 21 29 29 C 1.46930 * 120.62997 * 175.79697 * 11 9 8 30 30 C 1.38338 * 120.27362 * 270.35375 * 3 2 1 31 31 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47212 * 299.99733 * 1 2 3 33 33 H 1.08994 * 109.47666 * 59.99589 * 1 2 3 34 34 H 1.08999 * 109.46809 * 240.00438 * 2 1 3 35 35 H 1.08999 * 109.47099 * 119.99966 * 2 1 3 36 36 H 1.07997 * 119.41076 * 0.02765 * 4 3 2 37 37 H 0.96700 * 114.00491 * 270.02272 * 7 6 5 38 38 H 1.08997 * 109.58479 * 246.15774 * 12 11 9 39 39 H 1.08998 * 109.58662 * 6.58171 * 12 11 9 40 40 H 1.08992 * 109.49696 * 174.58687 * 13 12 11 41 41 H 1.09000 * 109.49518 * 294.68822 * 13 12 11 42 42 H 1.08997 * 109.46226 * 58.65447 * 14 13 12 43 43 H 1.09005 * 109.45447 * 178.62953 * 14 13 12 44 44 H 1.09002 * 109.47050 * 59.99926 * 19 17 15 45 45 H 1.08991 * 109.47276 * 179.97438 * 19 17 15 46 46 H 1.09002 * 109.47390 * 300.00320 * 19 17 15 47 47 H 0.97002 * 120.00192 * 24.99632 * 20 17 15 48 48 H 0.96999 * 119.99902 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.58526 * 353.41662 * 29 11 9 50 50 H 1.08999 * 109.58853 * 113.84359 * 29 11 9 51 51 H 1.08006 * 120.82311 * 359.96548 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2647 2.0784 1.1949 5 7 2.7037 3.3218 1.2160 6 6 2.9409 3.9961 0.1034 7 8 3.3907 5.2715 0.1723 8 6 2.7284 3.3984 -1.1478 9 6 2.9910 4.1467 -2.3917 10 8 4.0784 4.6589 -2.5750 11 7 2.0274 4.2579 -3.3274 12 6 0.7405 3.5684 -3.1623 13 6 -0.3896 4.5929 -3.3047 14 6 -0.2384 5.3314 -4.6366 15 6 1.0968 6.0789 -4.6587 16 1 1.1346 6.7808 -3.8256 17 6 1.2323 6.8434 -5.9771 18 1 0.4145 7.5582 -6.0683 19 6 1.1807 5.8575 -7.1460 20 7 2.5103 7.5592 -5.9974 21 6 2.6570 8.6766 -6.7752 22 1 1.8305 9.0300 -7.3740 23 6 3.8681 9.3545 -6.7949 24 7 4.8754 8.9236 -6.0655 25 14 4.0678 10.8793 -7.8554 26 1 3.0867 11.9099 -7.4305 27 1 5.4448 11.4135 -7.6999 28 1 3.8309 10.5271 -9.2784 29 6 2.2416 5.0758 -4.5291 30 6 2.2577 2.0809 -1.1947 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0835 1.5642 2.1272 37 1 2.6882 5.9358 0.1931 38 1 0.6364 2.8006 -3.9289 39 1 0.6957 3.1099 -2.1745 40 1 -1.3509 4.0799 -3.2802 41 1 -0.3374 5.3084 -2.4840 42 1 -0.2658 4.6126 -5.4555 43 1 -1.0553 6.0440 -4.7513 44 1 0.2296 5.3253 -7.1306 45 1 1.2768 6.4021 -8.0852 46 1 1.9985 5.1426 -7.0548 47 1 3.2527 7.2416 -5.4598 48 1 5.7216 9.3976 -6.0790 49 1 3.1870 5.6115 -4.4427 50 1 2.2624 4.4335 -5.4094 51 1 2.0788 1.5904 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715322249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:03 Heat of formation + Delta-G solvation = -60.022998 kcal Electronic energy + Delta-G solvation = -31732.387989 eV Core-core repulsion = 27630.938416 eV Total energy + Delta-G solvation = -4101.449573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.20985 -40.83099 -39.15155 -38.48006 -36.97284 -35.22990 -34.81030 -33.52400 -33.07616 -31.38281 -30.10062 -29.41188 -27.10395 -26.28764 -25.17243 -25.07056 -24.60361 -22.95960 -22.30045 -20.85597 -20.10557 -19.68619 -19.25218 -18.41677 -18.16276 -17.38641 -17.03785 -16.71583 -16.04496 -15.97177 -15.56630 -15.48955 -15.36818 -15.25465 -15.01122 -14.66672 -14.44389 -14.30057 -14.18399 -14.00960 -13.88375 -13.68908 -13.33762 -13.12696 -12.99092 -12.91871 -12.80831 -12.66719 -12.37316 -12.28695 -12.18084 -11.94323 -11.80347 -11.79112 -11.75110 -11.43918 -11.26936 -11.19962 -10.93042 -10.79471 -10.46232 -9.86612 -9.64545 -9.01284 -7.92525 -5.22243 -0.39300 -0.01060 1.43734 1.46143 1.47818 1.53987 1.85410 2.38248 2.55665 2.60725 3.24760 3.39962 3.62095 3.68496 3.73660 3.80803 3.86042 3.91181 4.04083 4.07680 4.18508 4.23357 4.29213 4.38106 4.53874 4.54667 4.58472 4.62180 4.69909 4.71885 4.80563 4.84979 4.86626 4.89736 4.94969 5.09145 5.11181 5.13172 5.23617 5.23946 5.35775 5.36852 5.40038 5.43805 5.48838 5.54159 5.55262 5.69096 6.27141 6.28297 6.42717 6.75839 7.02251 7.33175 8.12452 8.32904 9.30672 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016084 B = 0.002783 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.458895 B =10059.316021 C =11192.322286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C -0.131 4.131 4 C 0.142 3.858 5 N -0.521 5.521 6 C 0.327 3.673 7 O -0.494 6.494 8 C -0.197 4.197 9 C 0.555 3.445 10 O -0.576 6.576 11 N -0.596 5.596 12 C 0.093 3.907 13 C -0.128 4.128 14 C -0.108 4.108 15 C -0.091 4.091 16 H 0.043 0.957 17 C 0.172 3.828 18 H 0.047 0.953 19 C -0.157 4.157 20 N -0.742 5.742 21 C -0.236 4.236 22 H 0.079 0.921 23 C -0.083 4.083 24 N -0.974 5.974 25 Si 0.973 3.027 26 H -0.277 1.277 27 H -0.300 1.300 28 H -0.275 1.275 29 C 0.125 3.875 30 C -0.027 4.027 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.198 0.802 37 H 0.413 0.587 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.032 0.968 46 H 0.042 0.958 47 H 0.369 0.631 48 H 0.248 0.752 49 H 0.045 0.955 50 H 0.082 0.918 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.559 -24.190 13.094 33.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.133 4.133 4 C -0.016 4.016 5 N -0.239 5.239 6 C 0.149 3.851 7 O -0.303 6.303 8 C -0.204 4.204 9 C 0.343 3.657 10 O -0.455 6.455 11 N -0.328 5.328 12 C -0.028 4.028 13 C -0.165 4.165 14 C -0.146 4.146 15 C -0.111 4.111 16 H 0.062 0.938 17 C 0.063 3.937 18 H 0.065 0.935 19 C -0.217 4.217 20 N -0.383 5.383 21 C -0.368 4.368 22 H 0.097 0.903 23 C -0.274 4.274 24 N -0.625 5.625 25 Si 0.802 3.198 26 H -0.203 1.203 27 H -0.227 1.227 28 H -0.201 1.201 29 C 0.003 3.997 30 C -0.052 4.052 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.214 0.786 37 H 0.274 0.726 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.051 0.949 46 H 0.061 0.939 47 H 0.201 0.799 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.100 0.900 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -17.344 -23.532 13.621 32.251 hybrid contribution 0.955 1.596 -1.162 2.193 sum -16.389 -21.936 12.459 30.083 Atomic orbital electron populations 1.21791 0.93399 1.02971 1.02449 1.20580 0.96935 0.88688 1.05077 1.21185 1.00411 0.99467 0.92281 1.23302 0.90644 0.87743 0.99884 1.67324 1.14378 1.11506 1.30717 1.19266 0.91822 0.86907 0.87137 1.84764 1.36688 1.13264 1.95569 1.20851 1.08111 0.98596 0.92864 1.18468 0.83896 0.79924 0.83456 1.90873 1.25896 1.49528 1.79186 1.48167 1.15884 1.48523 1.20205 1.22360 0.80645 0.95493 1.04281 1.21921 0.99338 0.98150 0.97139 1.21620 0.94551 0.99654 0.98741 1.21527 0.96256 0.96068 0.97230 0.93810 1.20479 0.87740 0.92354 0.93080 0.93464 1.22398 1.01432 0.99206 0.98625 1.42810 1.11369 1.30541 1.53577 1.19620 0.96718 1.02389 1.18084 0.90332 1.25624 0.96279 1.03075 1.02465 1.69870 1.03326 1.43275 1.46030 0.85210 0.76160 0.79618 0.78776 1.20267 1.22679 1.20116 1.21452 0.98664 0.93055 0.86540 1.21844 0.92044 0.90397 1.00944 0.90841 0.92438 0.92348 0.89464 0.88618 0.78559 0.72628 0.88179 0.88155 0.86817 0.92932 0.89426 0.90530 0.89734 0.94852 0.93894 0.79853 0.94326 0.93647 0.89977 0.81492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.46 9.89 71.98 0.71 0.25 16 2 C -0.08 -0.33 6.08 29.85 0.18 -0.15 16 3 C -0.13 -1.53 5.14 -19.81 -0.10 -1.64 16 4 C 0.14 2.10 10.84 84.71 0.92 3.02 16 5 N -0.52 -12.50 10.37 -308.00 -3.19 -15.70 16 6 C 0.33 9.30 7.76 85.13 0.66 9.96 16 7 O -0.49 -15.94 12.78 -84.78 -1.08 -17.02 16 8 C -0.20 -5.15 4.91 -19.91 -0.10 -5.25 16 9 C 0.55 18.92 6.88 86.69 0.60 19.52 16 10 O -0.58 -27.21 16.21 -1.61 -0.03 -27.24 16 11 N -0.60 -16.63 2.98 -823.50 -2.45 -19.08 16 12 C 0.09 1.47 5.55 86.36 0.48 1.95 16 13 C -0.13 -1.90 6.08 30.67 0.19 -1.72 16 14 C -0.11 -2.15 4.78 30.62 0.15 -2.01 16 15 C -0.09 -2.89 2.32 -10.86 -0.03 -2.92 16 16 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 17 C 0.17 6.63 2.72 44.99 0.12 6.76 16 18 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 19 C -0.16 -5.19 8.79 71.98 0.63 -4.56 16 20 N -0.74 -39.00 5.04 -322.95 -1.63 -40.63 16 21 C -0.24 -13.57 9.93 84.03 0.83 -12.74 16 22 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 23 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 24 N -0.97 -64.14 13.06 21.65 0.28 -63.86 16 25 Si 0.97 48.28 29.55 68.60 2.03 50.31 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 29 C 0.13 4.32 5.19 86.22 0.45 4.77 16 30 C -0.03 -0.43 7.23 22.72 0.16 -0.27 16 31 H 0.07 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.09 0.29 8.09 -2.39 -0.02 0.28 16 35 H 0.10 0.18 8.09 -2.39 -0.02 0.16 16 36 H 0.20 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.41 9.66 9.06 -74.06 -0.67 8.99 16 38 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 1.27 4.72 -2.39 -0.01 1.25 16 40 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.09 1.46 6.50 -2.39 -0.02 1.45 16 43 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.08 2.02 6.46 -2.39 -0.02 2.01 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.04 1.46 6.32 -2.39 -0.02 1.44 16 47 H 0.37 21.65 6.17 -92.71 -0.57 21.08 16 48 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 49 H 0.04 2.11 5.61 -2.39 -0.01 2.10 16 50 H 0.08 2.61 6.16 -2.39 -0.01 2.60 16 51 H 0.17 1.84 7.40 -2.91 -0.02 1.82 16 Total: -1.00 -88.52 401.06 -0.03 -88.55 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: -0.28 Total: 34.21 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 6.32 Total: 10.46 kcal Atomic # 7 Polarization: -132.27 SS G_CDS: -6.99 Total: -139.27 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.11 Total: -44.26 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 2.03 Total: 50.31 kcal Total: -88.52 -0.03 -88.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715322249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.528 kcal (2) G-P(sol) polarization free energy of solvation -88.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds