Wall clock time and date at job start Wed Apr 1 2020 04:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47339 * 2 1 4 4 C 1.38353 * 120.27353 * 89.99866 * 3 2 1 5 5 N 1.31885 * 121.18716 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.79692 * 0.02562 * 5 4 3 7 7 O 1.35432 * 119.79778 * 180.02562 * 6 5 4 8 8 C 1.40278 * 120.40391 * 0.02708 * 6 5 4 9 9 C 1.47530 * 120.59693 * 179.97438 * 8 6 5 10 10 O 1.21594 * 119.99782 * 53.53064 * 9 8 6 11 11 N 1.34774 * 120.00021 * 233.53706 * 9 8 6 12 12 C 1.46925 * 120.63290 * 356.08771 * 11 9 8 13 13 C 1.53191 * 108.77558 * 126.37369 * 12 11 9 14 14 C 1.53040 * 109.31225 * 54.63554 * 13 12 11 15 15 C 1.53037 * 109.52912 * 298.64556 * 14 13 12 16 16 H 1.09007 * 109.49218 * 301.40414 * 15 14 13 17 17 C 1.53002 * 109.49695 * 181.30924 * 15 14 13 18 18 H 1.09002 * 109.46780 * 299.99307 * 17 15 14 19 19 C 1.52991 * 109.47060 * 59.99916 * 17 15 14 20 20 N 1.46502 * 109.46718 * 179.97438 * 17 15 14 21 21 C 1.36933 * 119.99739 * 155.00310 * 20 17 15 22 22 H 1.08001 * 120.00479 * 359.97438 * 21 20 17 23 23 C 1.38817 * 120.00102 * 180.02562 * 21 20 17 24 24 N 1.31614 * 119.99655 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46878 * 89.99666 * 25 23 21 27 27 H 1.48500 * 109.46886 * 209.99445 * 25 23 21 28 28 H 1.48493 * 109.47133 * 329.99823 * 25 23 21 29 29 C 1.46923 * 120.63090 * 176.07403 * 11 9 8 30 30 C 1.38342 * 120.26965 * 270.30488 * 3 2 1 31 31 H 1.08994 * 109.47442 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47014 * 300.00252 * 1 2 3 33 33 H 1.09003 * 109.47291 * 60.00026 * 1 2 3 34 34 H 1.08999 * 109.47014 * 239.99748 * 2 1 3 35 35 H 1.08995 * 109.47016 * 119.99769 * 2 1 3 36 36 H 1.07993 * 119.40462 * 359.97438 * 4 3 2 37 37 H 0.96698 * 114.00141 * 270.03279 * 7 6 5 38 38 H 1.09007 * 109.58553 * 6.58753 * 12 11 9 39 39 H 1.08999 * 109.58964 * 246.16674 * 12 11 9 40 40 H 1.09002 * 109.49595 * 294.68570 * 13 12 11 41 41 H 1.08998 * 109.49886 * 174.59138 * 13 12 11 42 42 H 1.09002 * 109.45476 * 58.65962 * 14 13 12 43 43 H 1.09000 * 109.46145 * 178.62623 * 14 13 12 44 44 H 1.08996 * 109.47192 * 299.99828 * 19 17 15 45 45 H 1.09002 * 109.47822 * 60.00028 * 19 17 15 46 46 H 1.09006 * 109.47177 * 180.02562 * 19 17 15 47 47 H 0.97002 * 120.00521 * 334.99681 * 20 17 15 48 48 H 0.96998 * 119.99707 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.58652 * 353.41411 * 29 11 9 50 50 H 1.09008 * 109.58953 * 113.83433 * 29 11 9 51 51 H 1.08005 * 120.82619 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2648 2.0783 1.1949 5 7 2.7049 3.3214 1.2159 6 6 2.9432 3.9951 0.1033 7 8 3.3951 5.2700 0.1721 8 6 2.7307 3.3974 -1.1479 9 6 2.9946 4.1453 -2.3919 10 8 4.0780 4.6683 -2.5686 11 7 2.0349 4.2488 -3.3324 12 6 0.7514 3.5518 -3.1722 13 6 -0.3842 4.5690 -3.3220 14 6 -0.2311 5.3059 -4.6545 15 6 1.0997 6.0613 -4.6715 16 1 1.1295 6.7646 -3.8393 17 6 1.2372 6.8240 -5.9907 18 1 1.2088 6.1197 -6.8222 19 6 0.0840 7.8202 -6.1264 20 7 2.5111 7.5473 -6.0061 21 6 3.1020 7.8680 -7.1990 22 1 2.6291 7.5874 -8.1286 23 6 4.3094 8.5529 -7.2136 24 7 4.8859 8.8944 -6.0808 25 14 5.1157 8.9898 -8.8410 26 1 4.6384 10.3231 -9.2877 27 1 6.5904 9.0239 -8.6693 28 1 4.7594 7.9697 -9.8596 29 6 2.2520 5.0612 -4.5372 30 6 2.2588 2.0803 -1.1948 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0827 1.5645 2.1271 37 1 2.6937 5.9353 0.1930 38 1 0.7047 3.0948 -2.1837 39 1 0.6557 2.7819 -3.9378 40 1 -0.3404 5.2864 -2.5024 41 1 -1.3425 4.0502 -3.3011 42 1 -0.2502 4.5853 -5.4722 43 1 -1.0517 6.0132 -4.7747 44 1 -0.8640 7.2824 -6.1148 45 1 0.1124 8.5244 -5.2949 46 1 0.1817 8.3633 -7.0665 47 1 2.9361 7.7991 -5.1712 48 1 5.7293 9.3733 -6.0910 49 1 3.1953 5.6001 -4.4494 50 1 2.2786 4.4143 -5.4142 51 1 2.0805 1.5897 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715322250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:08 Heat of formation + Delta-G solvation = -34.007630 kcal Electronic energy + Delta-G solvation = -31680.301529 eV Core-core repulsion = 27579.980067 eV Total energy + Delta-G solvation = -4100.321462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24160 -39.66888 -37.84268 -37.42398 -35.47282 -34.61081 -33.26529 -32.34224 -31.78378 -29.85713 -29.41616 -28.18773 -25.90587 -24.77143 -24.32831 -23.74366 -23.08403 -22.11180 -21.03306 -19.62467 -19.36584 -18.78737 -17.56730 -17.27422 -16.91557 -16.42680 -15.87103 -15.03266 -14.92331 -14.79958 -14.52828 -14.46231 -14.23944 -14.09088 -13.74931 -13.59107 -13.58813 -13.15555 -12.99592 -12.82918 -12.64045 -12.55704 -12.33904 -12.15210 -12.03261 -11.72033 -11.47554 -11.36449 -11.18142 -11.02011 -10.85035 -10.72438 -10.63157 -10.28288 -10.21421 -10.15276 -9.96349 -9.82434 -9.55330 -9.44796 -9.04025 -8.86907 -8.48203 -6.90157 -5.68997 -2.98614 0.45696 0.76413 2.66615 2.94513 3.24002 3.46865 3.47538 3.52196 3.54838 4.15787 4.27937 4.39914 4.47540 4.59917 4.63701 4.71482 4.84936 4.88526 4.94465 4.95927 5.08861 5.20801 5.25619 5.30888 5.38826 5.41958 5.45143 5.54769 5.61777 5.65945 5.74323 5.75365 5.77731 5.82535 5.89501 5.98931 6.08037 6.09749 6.17596 6.21219 6.42405 6.46610 6.49975 6.70142 6.72906 6.91534 7.10280 7.27994 7.46578 7.58227 7.75398 8.24884 8.48342 9.59500 10.16909 10.51116 11.53116 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.002824 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.692090 B = 9911.681988 C =10865.049941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.152 4.152 4 C 0.141 3.859 5 N -0.500 5.500 6 C 0.352 3.648 7 O -0.464 6.464 8 C -0.182 4.182 9 C 0.557 3.443 10 O -0.503 6.503 11 N -0.605 5.605 12 C 0.099 3.901 13 C -0.133 4.133 14 C -0.115 4.115 15 C -0.102 4.102 16 H 0.069 0.931 17 C 0.181 3.819 18 H 0.047 0.953 19 C -0.164 4.164 20 N -0.724 5.724 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.123 3.877 30 C -0.033 4.033 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.162 0.838 37 H 0.403 0.597 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.052 0.948 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.108 0.892 50 H 0.066 0.934 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.340 -19.302 13.723 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.154 4.154 4 C -0.017 4.017 5 N -0.218 5.218 6 C 0.173 3.827 7 O -0.271 6.271 8 C -0.188 4.188 9 C 0.343 3.657 10 O -0.376 6.376 11 N -0.339 5.339 12 C -0.024 4.024 13 C -0.171 4.171 14 C -0.153 4.153 15 C -0.123 4.123 16 H 0.088 0.912 17 C 0.070 3.930 18 H 0.065 0.935 19 C -0.225 4.225 20 N -0.366 5.366 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.219 1.219 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.002 3.998 30 C -0.059 4.059 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.180 0.820 37 H 0.262 0.738 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.127 0.873 50 H 0.084 0.916 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.929 -18.749 14.195 27.332 hybrid contribution 0.025 0.342 -1.378 1.420 sum -13.904 -18.407 12.817 26.390 Atomic orbital electron populations 1.21783 0.94317 1.02144 1.02407 1.20463 0.96369 0.91133 1.03628 1.20834 1.02709 0.98268 0.93601 1.22583 0.92461 0.88894 0.97795 1.67297 1.13352 1.09834 1.31277 1.19102 0.90183 0.87140 0.86266 1.84818 1.35043 1.11871 1.95379 1.21114 1.05487 0.97149 0.95077 1.17893 0.84618 0.80751 0.82451 1.90922 1.23014 1.45852 1.77848 1.48130 1.14760 1.49451 1.21511 1.21948 0.83382 0.95027 1.02051 1.21915 0.97588 0.98498 0.99103 1.21634 0.98041 0.99218 0.96397 1.21761 0.93569 0.96719 1.00210 0.91214 1.20164 0.87393 0.92127 0.93315 0.93522 1.22484 0.97927 1.00298 1.01754 1.42449 1.20631 1.67020 1.06459 1.19172 1.02078 1.29967 0.85895 0.91322 1.24739 0.98014 1.01453 0.96590 1.69662 1.19041 1.44738 1.24145 0.86245 0.78765 0.78154 0.83336 1.21858 1.21828 1.20847 1.21745 1.01106 0.92466 0.84446 1.21580 0.93079 0.92155 0.99047 0.92011 0.92381 0.92397 0.90501 0.90331 0.82038 0.73830 0.90082 0.91205 0.91734 0.90996 0.91806 0.91130 0.94331 0.93627 0.92865 0.78180 0.93495 0.87345 0.91585 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.16 0.37 -0.23 16 2 C -0.08 -0.37 6.08 -27.89 -0.17 -0.54 16 3 C -0.15 -1.16 5.14 -104.54 -0.54 -1.70 16 4 C 0.14 1.23 10.84 -17.49 -0.19 1.04 16 5 N -0.50 -6.13 10.37 -12.98 -0.13 -6.26 16 6 C 0.35 4.82 7.76 -16.61 -0.13 4.69 16 7 O -0.46 -6.75 12.76 -21.42 -0.27 -7.03 16 8 C -0.18 -2.37 4.93 -104.69 -0.52 -2.88 16 9 C 0.56 9.08 6.89 -12.47 -0.09 9.00 16 10 O -0.50 -10.91 16.18 1.85 0.03 -10.88 16 11 N -0.60 -8.51 2.97 -174.01 -0.52 -9.03 16 12 C 0.10 0.96 5.53 -3.71 -0.02 0.94 16 13 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 14 C -0.11 -1.32 4.85 -26.69 -0.13 -1.45 16 15 C -0.10 -1.60 1.97 -90.52 -0.18 -1.78 16 16 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 17 C 0.18 3.42 2.47 -67.93 -0.17 3.26 16 18 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 19 C -0.16 -2.86 9.14 37.15 0.34 -2.52 16 20 N -0.72 -17.91 4.52 -53.43 -0.24 -18.15 16 21 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 25 Si 0.90 22.81 29.55 -169.99 -5.02 17.78 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 29 C 0.12 2.09 5.46 -3.73 -0.02 2.07 16 30 C -0.03 -0.31 7.22 -38.89 -0.28 -0.59 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 35 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 36 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.40 3.95 9.06 45.56 0.41 4.36 16 38 H 0.08 0.67 4.70 -51.93 -0.24 0.42 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.78 6.36 -51.93 -0.33 0.45 16 44 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.38 10.38 7.62 -40.82 -0.31 10.07 16 48 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 49 H 0.11 2.36 6.54 -51.93 -0.34 2.02 16 50 H 0.07 1.10 8.14 -51.92 -0.42 0.67 16 51 H 0.14 1.09 7.36 -52.48 -0.39 0.70 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -36.09 406.49 -8.85 -44.94 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -7.41 Total: 9.85 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -2.13 Total: 0.69 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.17 Total: -61.48 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.24 Total: -17.91 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.09 -8.85 -44.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715322250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.931 kcal (2) G-P(sol) polarization free energy of solvation -36.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds