Wall clock time and date at job start Wed Apr 1 2020 04:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47339 * 2 1 4 4 C 1.38353 * 120.27353 * 89.99866 * 3 2 1 5 5 N 1.31885 * 121.18716 * 179.97438 * 4 3 2 6 6 C 1.32234 * 121.79692 * 0.02562 * 5 4 3 7 7 O 1.35432 * 119.79778 * 180.02562 * 6 5 4 8 8 C 1.40278 * 120.40391 * 0.02708 * 6 5 4 9 9 C 1.47530 * 120.59693 * 179.97438 * 8 6 5 10 10 O 1.21594 * 119.99782 * 53.53064 * 9 8 6 11 11 N 1.34774 * 120.00021 * 233.53706 * 9 8 6 12 12 C 1.46925 * 120.63290 * 356.08771 * 11 9 8 13 13 C 1.53191 * 108.77558 * 126.37369 * 12 11 9 14 14 C 1.53040 * 109.31225 * 54.63554 * 13 12 11 15 15 C 1.53037 * 109.52912 * 298.64556 * 14 13 12 16 16 H 1.09007 * 109.49218 * 301.40414 * 15 14 13 17 17 C 1.53002 * 109.49695 * 181.30924 * 15 14 13 18 18 H 1.09002 * 109.46780 * 299.99307 * 17 15 14 19 19 C 1.52991 * 109.47060 * 59.99916 * 17 15 14 20 20 N 1.46502 * 109.46718 * 179.97438 * 17 15 14 21 21 C 1.36933 * 119.99739 * 155.00310 * 20 17 15 22 22 H 1.08001 * 120.00479 * 359.97438 * 21 20 17 23 23 C 1.38817 * 120.00102 * 180.02562 * 21 20 17 24 24 N 1.31614 * 119.99655 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00007 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46878 * 89.99666 * 25 23 21 27 27 H 1.48500 * 109.46886 * 209.99445 * 25 23 21 28 28 H 1.48493 * 109.47133 * 329.99823 * 25 23 21 29 29 C 1.46923 * 120.63090 * 176.07403 * 11 9 8 30 30 C 1.38342 * 120.26965 * 270.30488 * 3 2 1 31 31 H 1.08994 * 109.47442 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47014 * 300.00252 * 1 2 3 33 33 H 1.09003 * 109.47291 * 60.00026 * 1 2 3 34 34 H 1.08999 * 109.47014 * 239.99748 * 2 1 3 35 35 H 1.08995 * 109.47016 * 119.99769 * 2 1 3 36 36 H 1.07993 * 119.40462 * 359.97438 * 4 3 2 37 37 H 0.96698 * 114.00141 * 270.03279 * 7 6 5 38 38 H 1.09007 * 109.58553 * 6.58753 * 12 11 9 39 39 H 1.08999 * 109.58964 * 246.16674 * 12 11 9 40 40 H 1.09002 * 109.49595 * 294.68570 * 13 12 11 41 41 H 1.08998 * 109.49886 * 174.59138 * 13 12 11 42 42 H 1.09002 * 109.45476 * 58.65962 * 14 13 12 43 43 H 1.09000 * 109.46145 * 178.62623 * 14 13 12 44 44 H 1.08996 * 109.47192 * 299.99828 * 19 17 15 45 45 H 1.09002 * 109.47822 * 60.00028 * 19 17 15 46 46 H 1.09006 * 109.47177 * 180.02562 * 19 17 15 47 47 H 0.97002 * 120.00521 * 334.99681 * 20 17 15 48 48 H 0.96998 * 119.99707 * 180.02562 * 24 23 21 49 49 H 1.09001 * 109.58652 * 353.41411 * 29 11 9 50 50 H 1.09008 * 109.58953 * 113.83433 * 29 11 9 51 51 H 1.08005 * 120.82619 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2648 2.0783 1.1949 5 7 2.7049 3.3214 1.2159 6 6 2.9432 3.9951 0.1033 7 8 3.3951 5.2700 0.1721 8 6 2.7307 3.3974 -1.1479 9 6 2.9946 4.1453 -2.3919 10 8 4.0780 4.6683 -2.5686 11 7 2.0349 4.2488 -3.3324 12 6 0.7514 3.5518 -3.1722 13 6 -0.3842 4.5690 -3.3220 14 6 -0.2311 5.3059 -4.6545 15 6 1.0997 6.0613 -4.6715 16 1 1.1295 6.7646 -3.8393 17 6 1.2372 6.8240 -5.9907 18 1 1.2088 6.1197 -6.8222 19 6 0.0840 7.8202 -6.1264 20 7 2.5111 7.5473 -6.0061 21 6 3.1020 7.8680 -7.1990 22 1 2.6291 7.5874 -8.1286 23 6 4.3094 8.5529 -7.2136 24 7 4.8859 8.8944 -6.0808 25 14 5.1157 8.9898 -8.8410 26 1 4.6384 10.3231 -9.2877 27 1 6.5904 9.0239 -8.6693 28 1 4.7594 7.9697 -9.8596 29 6 2.2520 5.0612 -4.5372 30 6 2.2588 2.0803 -1.1948 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.0827 1.5645 2.1271 37 1 2.6937 5.9353 0.1930 38 1 0.7047 3.0948 -2.1837 39 1 0.6557 2.7819 -3.9378 40 1 -0.3404 5.2864 -2.5024 41 1 -1.3425 4.0502 -3.3011 42 1 -0.2502 4.5853 -5.4722 43 1 -1.0517 6.0132 -4.7747 44 1 -0.8640 7.2824 -6.1148 45 1 0.1124 8.5244 -5.2949 46 1 0.1817 8.3633 -7.0665 47 1 2.9361 7.7991 -5.1712 48 1 5.7293 9.3733 -6.0910 49 1 3.1953 5.6001 -4.4494 50 1 2.2786 4.4143 -5.4142 51 1 2.0805 1.5897 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715322250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:06 Heat of formation + Delta-G solvation = -61.990228 kcal Electronic energy + Delta-G solvation = -31681.514945 eV Core-core repulsion = 27579.980067 eV Total energy + Delta-G solvation = -4101.534878 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.19621 -40.76243 -39.07642 -38.46778 -36.98660 -35.23088 -34.78726 -33.53868 -33.03830 -31.34681 -30.14137 -29.74553 -26.98890 -26.15211 -25.17742 -24.94508 -24.32561 -22.92591 -22.14440 -21.07200 -20.41601 -19.74520 -19.16192 -18.42578 -18.15281 -17.38808 -16.99822 -16.74111 -16.16987 -15.73126 -15.57735 -15.39884 -15.34807 -15.25249 -14.90902 -14.66792 -14.37813 -14.32317 -14.21424 -14.02586 -13.82064 -13.66226 -13.39786 -13.13033 -13.00941 -12.91477 -12.80699 -12.55923 -12.38620 -12.29137 -12.16480 -12.04578 -11.87162 -11.76959 -11.70161 -11.42772 -11.27432 -11.19694 -10.94715 -10.79306 -10.45725 -9.86926 -9.65948 -8.98853 -7.91753 -5.20232 -0.39454 -0.01323 1.43987 1.46567 1.47627 1.54678 1.86240 2.38669 2.56177 2.60649 3.25565 3.41804 3.61766 3.68409 3.72888 3.80556 3.84022 3.93450 4.06811 4.09470 4.19654 4.24797 4.28736 4.41004 4.53704 4.57019 4.58170 4.61893 4.71496 4.75688 4.84685 4.85898 4.90525 4.91825 4.94868 5.02514 5.05493 5.15059 5.23278 5.27781 5.36271 5.36612 5.40200 5.48207 5.49405 5.54910 5.56078 5.64182 6.28434 6.29394 6.43707 6.75879 7.03444 7.34341 8.12920 8.33946 9.31849 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.002824 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.692090 B = 9911.681988 C =10865.049941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 C -0.132 4.132 4 C 0.143 3.857 5 N -0.520 5.520 6 C 0.328 3.672 7 O -0.493 6.493 8 C -0.197 4.197 9 C 0.554 3.446 10 O -0.576 6.576 11 N -0.597 5.597 12 C 0.092 3.908 13 C -0.127 4.127 14 C -0.108 4.108 15 C -0.089 4.089 16 H 0.049 0.951 17 C 0.173 3.827 18 H 0.049 0.951 19 C -0.154 4.154 20 N -0.738 5.738 21 C -0.230 4.230 22 H 0.079 0.921 23 C -0.082 4.082 24 N -0.973 5.973 25 Si 0.970 3.030 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.266 1.266 29 C 0.131 3.869 30 C -0.027 4.027 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.198 0.802 37 H 0.414 0.586 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.033 0.967 47 H 0.367 0.633 48 H 0.247 0.753 49 H 0.048 0.952 50 H 0.070 0.930 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.216 -23.051 13.774 33.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.134 4.134 4 C -0.015 4.015 5 N -0.239 5.239 6 C 0.150 3.850 7 O -0.302 6.302 8 C -0.204 4.204 9 C 0.342 3.658 10 O -0.455 6.455 11 N -0.328 5.328 12 C -0.029 4.029 13 C -0.165 4.165 14 C -0.146 4.146 15 C -0.109 4.109 16 H 0.067 0.933 17 C 0.064 3.936 18 H 0.067 0.933 19 C -0.213 4.213 20 N -0.378 5.378 21 C -0.362 4.362 22 H 0.097 0.903 23 C -0.274 4.274 24 N -0.624 5.624 25 Si 0.799 3.201 26 H -0.214 1.214 27 H -0.229 1.229 28 H -0.191 1.191 29 C 0.008 3.992 30 C -0.053 4.053 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.114 0.886 36 H 0.215 0.785 37 H 0.274 0.726 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.074 0.926 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.198 0.802 48 H 0.056 0.944 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.929 -22.546 14.220 32.124 hybrid contribution 1.105 1.358 -1.321 2.193 sum -16.824 -21.187 12.899 29.972 Atomic orbital electron populations 1.21789 0.93379 1.02972 1.02455 1.20578 0.96960 0.88708 1.05054 1.21181 1.00447 0.99457 0.92280 1.23301 0.90619 0.87750 0.99856 1.67326 1.14368 1.11498 1.30687 1.19257 0.91734 0.86947 0.87090 1.84769 1.36660 1.13229 1.95562 1.20854 1.08101 0.98576 0.92890 1.18474 0.83815 0.79992 0.83489 1.90878 1.26083 1.49163 1.79410 1.48178 1.16142 1.48594 1.19912 1.22360 0.80875 0.95449 1.04168 1.21917 0.99130 0.98201 0.97207 1.21625 0.94955 0.99523 0.98519 1.21599 0.95859 0.96044 0.97392 0.93256 1.20483 0.85481 0.92330 0.95286 0.93271 1.22322 0.99044 0.99690 1.00260 1.42705 1.22649 1.67543 1.04875 1.19609 1.01660 1.27812 0.87154 0.90337 1.25579 0.99270 1.02799 0.99770 1.69857 1.19333 1.46723 1.26489 0.85183 0.76914 0.78218 0.79764 1.21411 1.22912 1.19055 1.21393 0.99079 0.92829 0.85888 1.21840 0.92088 0.90464 1.00909 0.90845 0.92377 0.92386 0.89545 0.88586 0.78521 0.72592 0.88135 0.88537 0.92647 0.86883 0.90224 0.89810 0.89922 0.94617 0.94733 0.80190 0.94432 0.93337 0.91217 0.81642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.89 71.98 0.71 0.22 16 2 C -0.08 -0.35 6.08 29.85 0.18 -0.17 16 3 C -0.13 -1.57 5.14 -19.81 -0.10 -1.67 16 4 C 0.14 2.11 10.84 84.71 0.92 3.03 16 5 N -0.52 -12.47 10.37 -308.00 -3.19 -15.67 16 6 C 0.33 9.32 7.76 85.13 0.66 9.98 16 7 O -0.49 -15.81 12.76 -84.00 -1.07 -16.88 16 8 C -0.20 -5.20 4.93 -19.91 -0.10 -5.30 16 9 C 0.55 19.18 6.89 86.69 0.60 19.77 16 10 O -0.58 -27.63 16.18 -0.73 -0.01 -27.64 16 11 N -0.60 -17.00 2.97 -822.72 -2.44 -19.44 16 12 C 0.09 1.50 5.53 86.36 0.48 1.98 16 13 C -0.13 -1.87 6.08 30.67 0.19 -1.69 16 14 C -0.11 -2.14 4.85 30.62 0.15 -1.99 16 15 C -0.09 -2.79 1.97 -10.73 -0.02 -2.81 16 16 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 17 C 0.17 6.57 2.47 44.99 0.11 6.69 16 18 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 19 C -0.15 -5.16 9.14 71.98 0.66 -4.50 16 20 N -0.74 -38.23 4.52 -322.94 -1.46 -39.69 16 21 C -0.23 -13.10 9.93 84.04 0.83 -12.26 16 22 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 23 C -0.08 -4.96 5.50 84.86 0.47 -4.50 16 24 N -0.97 -63.74 13.06 21.65 0.28 -63.46 16 25 Si 0.97 48.33 29.55 68.60 2.03 50.36 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 27 H -0.30 -15.42 7.11 99.48 0.71 -14.72 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 29 C 0.13 4.65 5.46 86.35 0.47 5.12 16 30 C -0.03 -0.45 7.22 22.72 0.16 -0.29 16 31 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.09 0.33 8.09 -2.39 -0.02 0.31 16 35 H 0.10 0.20 8.09 -2.39 -0.02 0.18 16 36 H 0.20 1.40 8.06 -2.91 -0.02 1.37 16 37 H 0.41 9.47 9.06 -74.06 -0.67 8.80 16 38 H 0.10 1.30 4.70 -2.38 -0.01 1.29 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.49 6.36 -2.39 -0.02 1.47 16 44 H 0.08 2.05 6.40 -2.39 -0.02 2.03 16 45 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.37 21.35 7.62 -92.71 -0.71 20.64 16 48 H 0.25 15.83 8.31 -92.71 -0.77 15.06 16 49 H 0.05 2.33 6.54 -2.39 -0.02 2.32 16 50 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 51 H 0.17 1.93 7.36 -2.91 -0.02 1.91 16 Total: -1.00 -87.68 406.49 0.07 -87.61 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.42 Total: 33.19 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.37 Total: 11.62 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -6.82 Total: -138.26 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -1.08 Total: -44.52 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -87.68 0.07 -87.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715322250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.618 kcal (2) G-P(sol) polarization free energy of solvation -87.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds