Wall clock time and date at job start Wed Apr 1 2020 04:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47026 * 2 1 4 4 C 1.38358 * 120.27003 * 89.99389 * 3 2 1 5 5 N 1.31883 * 121.18494 * 179.97438 * 4 3 2 6 6 C 1.32236 * 121.79930 * 359.97438 * 5 4 3 7 7 O 1.35428 * 119.79778 * 179.72317 * 6 5 4 8 8 C 1.40273 * 120.40152 * 0.02562 * 6 5 4 9 9 C 1.47527 * 120.60023 * 179.97438 * 8 6 5 10 10 O 1.21590 * 119.99520 * 38.03426 * 9 8 6 11 11 N 1.34768 * 120.00395 * 218.03548 * 9 8 6 12 12 C 1.46928 * 120.63115 * 5.69031 * 11 9 8 13 13 C 1.53193 * 108.77392 * 126.37168 * 12 11 9 14 14 C 1.53038 * 109.31353 * 54.63691 * 13 12 11 15 15 C 1.53038 * 109.53630 * 298.63431 * 14 13 12 16 16 H 1.09008 * 109.49543 * 181.32033 * 15 14 13 17 17 C 1.52999 * 109.49579 * 301.41202 * 15 14 13 18 18 C 1.46927 * 120.63498 * 185.41569 * 11 9 8 19 19 H 1.08994 * 109.59105 * 113.83741 * 18 11 9 20 20 C 1.53008 * 109.58222 * 353.41515 * 18 11 9 21 21 N 1.46500 * 109.46872 * 69.88358 * 20 18 11 22 22 C 1.36943 * 119.99775 * 175.29255 * 21 20 18 23 23 H 1.08002 * 119.99988 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99717 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00130 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99442 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47118 * 90.00239 * 26 24 22 28 28 H 1.48503 * 109.46913 * 209.99664 * 26 24 22 29 29 H 1.48499 * 109.47481 * 329.99786 * 26 24 22 30 30 C 1.38331 * 120.26949 * 269.97878 * 3 2 1 31 31 H 1.08989 * 109.47437 * 300.00215 * 1 2 3 32 32 H 1.09003 * 109.46717 * 60.00622 * 1 2 3 33 33 H 1.09001 * 109.46836 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47412 * 240.00301 * 2 1 3 35 35 H 1.08994 * 109.46929 * 119.99298 * 2 1 3 36 36 H 1.08002 * 119.41186 * 0.02562 * 4 3 2 37 37 H 0.96696 * 114.00095 * 90.00870 * 7 6 5 38 38 H 1.08999 * 109.59315 * 246.15857 * 12 11 9 39 39 H 1.09002 * 109.58691 * 6.44246 * 12 11 9 40 40 H 1.09001 * 109.49612 * 174.58783 * 13 12 11 41 41 H 1.09000 * 109.49838 * 294.64721 * 13 12 11 42 42 H 1.09003 * 109.45930 * 58.65817 * 14 13 12 43 43 H 1.09002 * 109.45926 * 178.61380 * 14 13 12 44 44 H 1.08992 * 109.47106 * 60.00413 * 17 15 14 45 45 H 1.09007 * 109.46683 * 180.02562 * 17 15 14 46 46 H 1.08996 * 109.47587 * 299.99815 * 17 15 14 47 47 H 1.09000 * 109.46812 * 189.88018 * 20 18 11 48 48 H 1.08996 * 109.47116 * 309.87945 * 20 18 11 49 49 H 0.96998 * 120.00322 * 355.27847 * 21 20 18 50 50 H 0.97001 * 119.99852 * 180.02562 * 25 24 22 51 51 H 1.07997 * 120.83036 * 0.03654 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2647 2.0785 1.1949 5 7 2.7047 3.3215 1.2160 6 6 2.9440 3.9950 0.1034 7 8 3.3899 5.2719 0.1723 8 6 2.7327 3.3969 -1.1477 9 6 2.9977 4.1443 -2.3917 10 8 3.9518 4.8951 -2.4583 11 7 2.1824 3.9949 -3.4544 12 6 0.9578 3.1897 -3.3510 13 6 -0.2305 4.0376 -3.8157 14 6 0.0508 4.5763 -5.2203 15 6 1.2956 5.4660 -5.1874 16 1 1.4817 5.8682 -6.1833 17 6 1.0745 6.6173 -4.2043 18 6 2.4981 4.6389 -4.7367 19 1 2.7150 3.8767 -5.4849 20 6 3.7124 5.5540 -4.5657 21 7 4.9117 4.7395 -4.3542 22 6 6.1404 5.3386 -4.2717 23 1 6.2253 6.4114 -4.3630 24 6 7.2766 4.5669 -4.0708 25 7 7.1730 3.2595 -3.9591 26 14 8.9527 5.3840 -3.9590 27 1 9.2407 5.7312 -2.5441 28 1 9.9928 4.4506 -4.4611 29 1 8.9570 6.6196 -4.7827 30 6 2.2652 2.0781 -1.1947 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 2.0833 1.5643 2.1273 37 1 4.3533 5.3513 0.1952 38 1 1.0463 2.3068 -3.9839 39 1 0.8081 2.8835 -2.3156 40 1 -1.1304 3.4230 -3.8353 41 1 -0.3740 4.8709 -3.1279 42 1 0.2182 3.7426 -5.9022 43 1 -0.8037 5.1598 -5.5633 44 1 0.8899 6.2144 -3.2085 45 1 1.9612 7.2510 -4.1815 46 1 0.2150 7.2071 -4.5227 47 1 3.8389 6.1611 -5.4621 48 1 3.5587 6.2047 -3.7049 49 1 4.8354 3.7760 -4.2724 50 1 7.9669 2.7203 -3.8183 51 1 2.0910 1.5861 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715472694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:25 Heat of formation + Delta-G solvation = 12.015073 kcal Electronic energy + Delta-G solvation = -33271.132189 eV Core-core repulsion = 29172.806421 eV Total energy + Delta-G solvation = -4098.325767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.00707 -39.78744 -37.44493 -36.85265 -34.74479 -34.27415 -33.45695 -32.13626 -31.62996 -30.12127 -29.09184 -27.05504 -26.17597 -24.69767 -24.19633 -23.73734 -22.70431 -22.17380 -20.98618 -19.88478 -18.69560 -18.21184 -17.25440 -16.90828 -16.41078 -15.85559 -15.45674 -15.23935 -14.94977 -14.76976 -14.29729 -14.12084 -14.03598 -13.79547 -13.54681 -13.39608 -13.33862 -13.09719 -12.91262 -12.66413 -12.46386 -12.30115 -12.12579 -12.01719 -11.80957 -11.51793 -11.35846 -11.33627 -11.19672 -10.98270 -10.89713 -10.71707 -10.61741 -10.34676 -10.19796 -9.86715 -9.58641 -9.52849 -9.46782 -8.76633 -8.66686 -8.28641 -8.05546 -6.53159 -5.57927 -2.76419 0.83039 1.15564 3.23066 3.32158 3.53477 3.58479 3.59563 3.72777 3.98400 4.53711 4.59477 4.72219 4.74605 4.76576 4.84385 4.85908 4.94425 5.04773 5.12028 5.13929 5.28028 5.32098 5.39280 5.44430 5.55805 5.61214 5.67009 5.74072 5.74792 5.77416 5.79200 5.83280 5.90830 5.95185 5.95958 5.97490 6.02094 6.15936 6.16670 6.22233 6.33620 6.48381 6.52509 6.57513 6.69857 6.95719 7.32071 7.70384 7.86132 7.89501 7.99510 8.60461 8.89898 9.71701 10.31914 10.66161 11.65953 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.004879 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.944181 B = 5737.527928 C = 7559.773072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.157 4.157 4 C 0.134 3.866 5 N -0.505 5.505 6 C 0.353 3.647 7 O -0.473 6.473 8 C -0.171 4.171 9 C 0.526 3.474 10 O -0.429 6.429 11 N -0.607 5.607 12 C 0.101 3.899 13 C -0.136 4.136 14 C -0.112 4.112 15 C -0.100 4.100 16 H 0.079 0.921 17 C -0.144 4.144 18 C 0.149 3.851 19 H 0.068 0.932 20 C 0.158 3.842 21 N -0.697 5.697 22 C -0.204 4.204 23 H 0.065 0.935 24 C -0.022 4.022 25 N -0.939 5.939 26 Si 0.901 3.099 27 H -0.294 1.294 28 H -0.295 1.295 29 H -0.284 1.284 30 C -0.037 4.037 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.158 0.842 37 H 0.412 0.588 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.013 0.987 48 H 0.050 0.950 49 H 0.378 0.622 50 H 0.249 0.751 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.573 -5.543 4.582 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 C -0.159 4.159 4 C -0.024 4.024 5 N -0.224 5.224 6 C 0.173 3.827 7 O -0.282 6.282 8 C -0.178 4.178 9 C 0.310 3.690 10 O -0.297 6.297 11 N -0.344 5.344 12 C -0.022 4.022 13 C -0.174 4.174 14 C -0.150 4.150 15 C -0.120 4.120 16 H 0.098 0.902 17 C -0.201 4.201 18 C 0.046 3.954 19 H 0.086 0.914 20 C 0.030 3.970 21 N -0.339 5.339 22 C -0.336 4.336 23 H 0.083 0.917 24 C -0.216 4.216 25 N -0.589 5.589 26 Si 0.733 3.267 27 H -0.222 1.222 28 H -0.222 1.222 29 H -0.210 1.210 30 C -0.063 4.063 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.175 0.825 37 H 0.272 0.728 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.031 0.969 48 H 0.068 0.932 49 H 0.212 0.788 50 H 0.059 0.941 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.251 -4.315 5.297 20.427 hybrid contribution 1.281 -0.563 -0.604 1.524 sum -17.970 -4.878 4.693 19.202 Atomic orbital electron populations 1.21771 0.94616 1.01838 1.02256 1.20433 0.96070 0.91538 1.03468 1.20787 1.03143 0.98180 0.93789 1.22466 0.93454 0.88984 0.97539 1.67250 1.14613 1.08830 1.31671 1.19087 0.92673 0.84544 0.86362 1.84577 1.28888 1.19334 1.95374 1.21354 1.05205 0.95738 0.95541 1.17738 0.83718 0.85027 0.82519 1.91182 1.25826 1.33114 1.79546 1.47615 1.23432 1.52289 1.11112 1.21951 0.84609 0.93774 1.01888 1.21962 0.97494 1.00226 0.97764 1.21527 0.97637 0.99218 0.96579 1.21399 0.94705 0.96044 0.99859 0.90248 1.21853 1.01336 0.97575 0.99357 1.21408 0.95019 0.94889 0.84080 0.91430 1.21024 0.84924 0.93370 0.97637 1.42278 1.01183 1.05577 1.84850 1.19168 0.84250 0.91646 1.38545 0.91656 1.24599 0.97385 0.95437 1.04223 1.69655 1.27690 1.03406 1.58184 0.86250 0.84907 0.77989 0.77509 1.22158 1.22170 1.21034 1.21736 0.93119 0.92646 0.98773 0.92517 0.92526 0.92213 0.90596 0.90565 0.82527 0.72782 0.91887 0.89746 0.91360 0.91210 0.91927 0.92006 0.92453 0.91931 0.93511 0.96896 0.93214 0.78841 0.94071 0.83924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.08 -0.61 6.08 -27.88 -0.17 -0.78 16 3 C -0.16 -1.77 5.14 -104.54 -0.54 -2.31 16 4 C 0.13 1.64 10.84 -17.49 -0.19 1.45 16 5 N -0.51 -7.95 10.37 -12.98 -0.13 -8.09 16 6 C 0.35 6.08 7.74 -16.61 -0.13 5.95 16 7 O -0.47 -8.39 12.30 -34.35 -0.42 -8.81 16 8 C -0.17 -2.87 5.22 -104.69 -0.55 -3.41 16 9 C 0.53 9.96 6.62 -12.48 -0.08 9.88 16 10 O -0.43 -9.97 9.88 -11.09 -0.11 -10.08 16 11 N -0.61 -9.58 2.42 -166.70 -0.40 -9.98 16 12 C 0.10 1.18 4.87 -3.71 -0.02 1.16 16 13 C -0.14 -1.37 5.74 -26.61 -0.15 -1.52 16 14 C -0.11 -1.16 5.43 -26.69 -0.14 -1.30 16 15 C -0.10 -1.30 2.79 -90.73 -0.25 -1.56 16 16 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 17 C -0.14 -1.93 8.20 37.16 0.30 -1.62 16 18 C 0.15 2.47 2.61 -67.82 -0.18 2.30 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.34 4.01 -4.04 -0.02 3.33 16 21 N -0.70 -18.23 3.24 -59.90 -0.19 -18.43 16 22 C -0.20 -5.95 9.71 -15.06 -0.15 -6.09 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 24 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 25 N -0.94 -29.36 13.06 55.49 0.72 -28.63 16 26 Si 0.90 23.52 29.55 -169.99 -5.02 18.49 16 27 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 28 H -0.29 -7.74 7.11 56.52 0.40 -7.33 16 29 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 30 C -0.04 -0.49 7.16 -38.89 -0.28 -0.77 16 31 H 0.06 0.38 8.14 -51.94 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.08 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.41 6.50 9.06 45.56 0.41 6.91 16 38 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 39 H 0.08 0.95 4.59 -51.93 -0.24 0.71 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.78 6.34 -51.93 -0.33 0.45 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.06 0.83 5.97 -51.93 -0.31 0.52 16 45 H 0.06 0.94 6.55 -51.93 -0.34 0.60 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.01 0.29 8.12 -51.93 -0.42 -0.14 16 48 H 0.05 1.14 5.05 -51.93 -0.26 0.88 16 49 H 0.38 10.56 7.12 -40.82 -0.29 10.27 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.14 1.69 6.42 -52.49 -0.34 1.35 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -35.17 390.69 -9.09 -44.26 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -7.15 Total: 12.04 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.26 Total: 3.33 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -0.01 Total: -65.13 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.53 Total: -18.89 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.17 -9.09 -44.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715472694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.280 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds