Wall clock time and date at job start Wed Apr 1 2020 04:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50705 * 109.47026 * 2 1 4 4 C 1.38358 * 120.27003 * 89.99389 * 3 2 1 5 5 N 1.31883 * 121.18494 * 179.97438 * 4 3 2 6 6 C 1.32236 * 121.79930 * 359.97438 * 5 4 3 7 7 O 1.35428 * 119.79778 * 179.72317 * 6 5 4 8 8 C 1.40273 * 120.40152 * 0.02562 * 6 5 4 9 9 C 1.47527 * 120.60023 * 179.97438 * 8 6 5 10 10 O 1.21590 * 119.99520 * 38.03426 * 9 8 6 11 11 N 1.34768 * 120.00395 * 218.03548 * 9 8 6 12 12 C 1.46928 * 120.63115 * 5.69031 * 11 9 8 13 13 C 1.53193 * 108.77392 * 126.37168 * 12 11 9 14 14 C 1.53038 * 109.31353 * 54.63691 * 13 12 11 15 15 C 1.53038 * 109.53630 * 298.63431 * 14 13 12 16 16 H 1.09008 * 109.49543 * 181.32033 * 15 14 13 17 17 C 1.52999 * 109.49579 * 301.41202 * 15 14 13 18 18 C 1.46927 * 120.63498 * 185.41569 * 11 9 8 19 19 H 1.08994 * 109.59105 * 113.83741 * 18 11 9 20 20 C 1.53008 * 109.58222 * 353.41515 * 18 11 9 21 21 N 1.46500 * 109.46872 * 69.88358 * 20 18 11 22 22 C 1.36943 * 119.99775 * 175.29255 * 21 20 18 23 23 H 1.08002 * 119.99988 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99717 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00130 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99442 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47118 * 90.00239 * 26 24 22 28 28 H 1.48503 * 109.46913 * 209.99664 * 26 24 22 29 29 H 1.48499 * 109.47481 * 329.99786 * 26 24 22 30 30 C 1.38331 * 120.26949 * 269.97878 * 3 2 1 31 31 H 1.08989 * 109.47437 * 300.00215 * 1 2 3 32 32 H 1.09003 * 109.46717 * 60.00622 * 1 2 3 33 33 H 1.09001 * 109.46836 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47412 * 240.00301 * 2 1 3 35 35 H 1.08994 * 109.46929 * 119.99298 * 2 1 3 36 36 H 1.08002 * 119.41186 * 0.02562 * 4 3 2 37 37 H 0.96696 * 114.00095 * 90.00870 * 7 6 5 38 38 H 1.08999 * 109.59315 * 246.15857 * 12 11 9 39 39 H 1.09002 * 109.58691 * 6.44246 * 12 11 9 40 40 H 1.09001 * 109.49612 * 174.58783 * 13 12 11 41 41 H 1.09000 * 109.49838 * 294.64721 * 13 12 11 42 42 H 1.09003 * 109.45930 * 58.65817 * 14 13 12 43 43 H 1.09002 * 109.45926 * 178.61380 * 14 13 12 44 44 H 1.08992 * 109.47106 * 60.00413 * 17 15 14 45 45 H 1.09007 * 109.46683 * 180.02562 * 17 15 14 46 46 H 1.08996 * 109.47587 * 299.99815 * 17 15 14 47 47 H 1.09000 * 109.46812 * 189.88018 * 20 18 11 48 48 H 1.08996 * 109.47116 * 309.87945 * 20 18 11 49 49 H 0.96998 * 120.00322 * 355.27847 * 21 20 18 50 50 H 0.97001 * 119.99852 * 180.02562 * 25 24 22 51 51 H 1.07997 * 120.83036 * 0.03654 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2647 2.0785 1.1949 5 7 2.7047 3.3215 1.2160 6 6 2.9440 3.9950 0.1034 7 8 3.3899 5.2719 0.1723 8 6 2.7327 3.3969 -1.1477 9 6 2.9977 4.1443 -2.3917 10 8 3.9518 4.8951 -2.4583 11 7 2.1824 3.9949 -3.4544 12 6 0.9578 3.1897 -3.3510 13 6 -0.2305 4.0376 -3.8157 14 6 0.0508 4.5763 -5.2203 15 6 1.2956 5.4660 -5.1874 16 1 1.4817 5.8682 -6.1833 17 6 1.0745 6.6173 -4.2043 18 6 2.4981 4.6389 -4.7367 19 1 2.7150 3.8767 -5.4849 20 6 3.7124 5.5540 -4.5657 21 7 4.9117 4.7395 -4.3542 22 6 6.1404 5.3386 -4.2717 23 1 6.2253 6.4114 -4.3630 24 6 7.2766 4.5669 -4.0708 25 7 7.1730 3.2595 -3.9591 26 14 8.9527 5.3840 -3.9590 27 1 9.2407 5.7312 -2.5441 28 1 9.9928 4.4506 -4.4611 29 1 8.9570 6.6196 -4.7827 30 6 2.2652 2.0781 -1.1947 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5137 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 2.0833 1.5643 2.1273 37 1 4.3533 5.3513 0.1952 38 1 1.0463 2.3068 -3.9839 39 1 0.8081 2.8835 -2.3156 40 1 -1.1304 3.4230 -3.8353 41 1 -0.3740 4.8709 -3.1279 42 1 0.2182 3.7426 -5.9022 43 1 -0.8037 5.1598 -5.5633 44 1 0.8899 6.2144 -3.2085 45 1 1.9612 7.2510 -4.1815 46 1 0.2150 7.2071 -4.5227 47 1 3.8389 6.1611 -5.4621 48 1 3.5587 6.2047 -3.7049 49 1 4.8354 3.7760 -4.2724 50 1 7.9669 2.7203 -3.8183 51 1 2.0910 1.5861 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715472694.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:24 Heat of formation + Delta-G solvation = -13.297812 kcal Electronic energy + Delta-G solvation = -33272.229838 eV Core-core repulsion = 29172.806421 eV Total energy + Delta-G solvation = -4099.423416 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23944 -40.99146 -38.68529 -38.12238 -36.46528 -35.21444 -34.84322 -33.69259 -32.75963 -31.84555 -30.02290 -28.48742 -27.35665 -26.19539 -25.19816 -25.00995 -24.15593 -23.31365 -22.27128 -21.02931 -19.95585 -19.53278 -18.93377 -18.18159 -17.77997 -17.07480 -16.81248 -16.67314 -16.24360 -15.84944 -15.75784 -15.39923 -15.19996 -14.94276 -14.78681 -14.67527 -14.50300 -14.33834 -14.11971 -13.90533 -13.78465 -13.66941 -13.30543 -13.00789 -12.93909 -12.83837 -12.81451 -12.64302 -12.44987 -12.22602 -12.12853 -12.02380 -11.85669 -11.78751 -11.62798 -11.33477 -11.24945 -10.88616 -10.72196 -10.63343 -9.85611 -9.72820 -9.42235 -8.62708 -7.84856 -5.03067 -0.31913 0.05490 1.42351 1.45132 1.52619 1.96577 2.06818 2.48536 2.60830 2.82103 3.43165 3.49764 3.65826 3.74840 3.79462 3.84749 3.86089 3.90313 4.10928 4.17254 4.25140 4.31921 4.38582 4.44641 4.52549 4.55634 4.57209 4.61889 4.76510 4.80635 4.81703 4.87227 4.88650 4.94556 4.96971 5.00740 5.10578 5.20235 5.24888 5.27453 5.30454 5.36672 5.40543 5.42388 5.52695 5.53905 5.55817 5.85474 6.36660 6.44047 6.59126 6.82012 7.42403 7.50434 8.22868 8.46287 9.39823 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.004879 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.944181 B = 5737.527928 C = 7559.773072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.075 4.075 3 C -0.139 4.139 4 C 0.135 3.865 5 N -0.524 5.524 6 C 0.325 3.675 7 O -0.489 6.489 8 C -0.195 4.195 9 C 0.526 3.474 10 O -0.490 6.490 11 N -0.601 5.601 12 C 0.093 3.907 13 C -0.131 4.131 14 C -0.106 4.106 15 C -0.095 4.095 16 H 0.088 0.912 17 C -0.138 4.138 18 C 0.153 3.847 19 H 0.064 0.936 20 C 0.163 3.837 21 N -0.704 5.704 22 C -0.206 4.206 23 H 0.059 0.941 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.963 3.037 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.273 1.273 30 C -0.035 4.035 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.196 0.804 37 H 0.411 0.589 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.042 0.958 45 H 0.034 0.966 46 H 0.072 0.928 47 H 0.008 0.992 48 H 0.031 0.969 49 H 0.366 0.634 50 H 0.244 0.756 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.660 -7.636 4.588 24.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.141 4.141 4 C -0.023 4.023 5 N -0.243 5.243 6 C 0.147 3.853 7 O -0.298 6.298 8 C -0.202 4.202 9 C 0.312 3.688 10 O -0.362 6.362 11 N -0.337 5.337 12 C -0.028 4.028 13 C -0.169 4.169 14 C -0.143 4.143 15 C -0.115 4.115 16 H 0.106 0.894 17 C -0.195 4.195 18 C 0.050 3.950 19 H 0.082 0.918 20 C 0.037 3.963 21 N -0.344 5.344 22 C -0.339 4.339 23 H 0.077 0.923 24 C -0.272 4.272 25 N -0.626 5.626 26 Si 0.794 3.206 27 H -0.224 1.224 28 H -0.221 1.221 29 H -0.198 1.198 30 C -0.061 4.061 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.213 0.787 37 H 0.272 0.728 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.026 0.974 48 H 0.049 0.951 49 H 0.198 0.802 50 H 0.053 0.947 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.424 -6.397 5.285 23.910 hybrid contribution 2.057 0.016 -0.485 2.114 sum -20.366 -6.381 4.800 21.876 Atomic orbital electron populations 1.21765 0.93209 1.02991 1.02297 1.20560 0.97078 0.88852 1.04794 1.21194 1.00774 0.99621 0.92472 1.23223 0.91569 0.87849 0.99621 1.67277 1.15504 1.10391 1.31128 1.19269 0.94132 0.84673 0.87226 1.84536 1.29055 1.20706 1.95550 1.21265 1.07423 0.97235 0.94234 1.18248 0.83064 0.83950 0.83577 1.91152 1.28314 1.35835 1.80929 1.47730 1.24170 1.51897 1.09925 1.22293 0.83311 0.94243 1.02975 1.21953 0.97748 1.00032 0.97133 1.21518 0.96507 0.99229 0.97064 1.21395 0.94487 0.95832 0.99745 0.89408 1.21781 1.01131 0.97649 0.98916 1.21293 0.94732 0.94499 0.84475 0.91778 1.20993 0.85467 0.93725 0.96123 1.42303 1.01762 1.05151 1.85185 1.19445 0.85831 0.91474 1.37144 0.92254 1.25286 1.00634 0.96062 1.05245 1.69807 1.27987 1.04542 1.60284 0.85267 0.80792 0.77398 0.77187 1.22432 1.22133 1.19812 1.21956 0.92405 0.91214 1.00500 0.92414 0.92634 0.90541 0.89988 0.88644 0.78730 0.72839 0.89836 0.89157 0.87932 0.92407 0.90765 0.89692 0.93863 0.94645 0.90874 0.97440 0.95139 0.80212 0.94740 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 71.98 0.71 -0.61 16 2 C -0.08 -0.89 6.08 29.85 0.18 -0.71 16 3 C -0.14 -2.77 5.14 -19.81 -0.10 -2.88 16 4 C 0.14 3.03 10.84 84.71 0.92 3.95 16 5 N -0.52 -16.43 10.37 -308.00 -3.19 -19.62 16 6 C 0.33 11.68 7.74 85.13 0.66 12.34 16 7 O -0.49 -18.87 12.30 -71.58 -0.88 -19.75 16 8 C -0.19 -6.67 5.22 -19.91 -0.10 -6.78 16 9 C 0.53 20.85 6.62 86.69 0.57 21.43 16 10 O -0.49 -24.44 9.88 11.66 0.12 -24.33 16 11 N -0.60 -19.05 2.42 -799.57 -1.93 -20.99 16 12 C 0.09 1.97 4.87 86.36 0.42 2.39 16 13 C -0.13 -2.19 5.74 30.67 0.18 -2.01 16 14 C -0.11 -1.81 5.43 30.62 0.17 -1.65 16 15 C -0.09 -2.35 2.79 -10.86 -0.03 -2.38 16 16 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 17 C -0.14 -3.65 8.20 71.98 0.59 -3.06 16 18 C 0.15 5.14 2.61 44.83 0.12 5.26 16 19 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 20 C 0.16 7.30 4.01 86.38 0.35 7.65 16 21 N -0.70 -38.76 3.24 -343.43 -1.11 -39.87 16 22 C -0.21 -12.56 9.71 84.03 0.82 -11.74 16 23 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 24 C -0.08 -5.03 5.50 84.86 0.47 -4.56 16 25 N -0.97 -63.07 13.06 21.65 0.28 -62.79 16 26 Si 0.96 50.05 29.55 68.60 2.03 52.08 16 27 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 28 H -0.29 -15.17 7.11 99.48 0.71 -14.46 16 29 H -0.27 -13.49 7.11 99.48 0.71 -12.78 16 30 C -0.04 -0.89 7.16 22.72 0.16 -0.73 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.10 0.84 8.09 -2.39 -0.02 0.82 16 36 H 0.20 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.41 14.70 9.06 -74.06 -0.67 14.03 16 38 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 39 H 0.09 1.82 4.59 -2.39 -0.01 1.81 16 40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.14 6.34 -2.39 -0.02 1.13 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.04 1.26 5.97 -2.39 -0.01 1.25 16 45 H 0.03 1.11 6.55 -2.38 -0.02 1.09 16 46 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 47 H 0.01 0.35 8.12 -2.39 -0.02 0.34 16 48 H 0.03 1.52 5.05 -2.39 -0.01 1.51 16 49 H 0.37 21.50 7.12 -92.71 -0.66 20.84 16 50 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 51 H 0.16 3.42 6.42 -2.91 -0.02 3.40 16 Total: -1.00 -82.19 390.69 1.01 -81.18 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -0.37 Total: 38.18 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.07 Total: 15.92 kcal Atomic # 7 Polarization: -137.32 SS G_CDS: -5.96 Total: -143.28 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.77 Total: -44.07 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.03 Total: 52.08 kcal Total: -82.19 1.01 -81.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715472694.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.882 kcal (2) G-P(sol) polarization free energy of solvation -82.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds