Wall clock time and date at job start Wed Apr 1 2020 05:22:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42896 * 109.47152 * 2 1
4 4 C 1.35499 * 117.00100 * 180.02562 * 3 2 1
5 5 C 1.39164 * 119.52975 * 179.97438 * 4 3 2
6 6 C 1.37956 * 119.26572 * 180.02562 * 5 4 3
7 7 C 1.40277 * 118.35683 * 0.02562 * 6 5 4
8 8 C 1.47615 * 120.49736 * 179.97438 * 7 6 5
9 9 O 1.21580 * 120.00064 * 324.41136 * 8 7 6
10 10 N 1.34780 * 119.99875 * 144.40906 * 8 7 6
11 11 C 1.46932 * 120.62868 * 174.58412 * 10 8 7
12 12 C 1.53192 * 108.77407 * 126.37084 * 11 10 8
13 13 C 1.53040 * 109.31180 * 54.63371 * 12 11 10
14 14 C 1.52997 * 109.46114 * 178.62458 * 13 12 11
15 15 C 1.53008 * 109.47339 * 176.70418 * 14 13 12
16 16 N 1.46502 * 109.46003 * 58.65595 * 13 12 11
17 17 C 1.36938 * 119.99883 * 58.41289 * 16 13 12
18 18 H 1.07992 * 120.00348 * 358.55843 * 17 16 13
19 19 C 1.38820 * 119.99789 * 178.55434 * 17 16 13
20 20 N 1.31617 * 120.00050 * 359.97438 * 19 17 16
21 21 Si 1.86805 * 119.99814 * 180.02562 * 19 17 16
22 22 H 1.48493 * 109.46832 * 270.00016 * 21 19 17
23 23 H 1.48498 * 109.47039 * 29.99775 * 21 19 17
24 24 H 1.48495 * 109.46825 * 149.99953 * 21 19 17
25 25 C 1.53041 * 109.54074 * 298.63560 * 13 12 11
26 26 C 1.46930 * 120.63384 * 354.56607 * 10 8 7
27 27 C 1.39524 * 119.00508 * 0.24625 * 7 6 5
28 28 N 1.31663 * 120.62655 * 359.48150 * 27 7 6
29 29 H 1.08997 * 109.47088 * 59.99652 * 1 2 3
30 30 H 1.09003 * 109.47268 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.47277 * 299.99730 * 1 2 3
32 32 H 1.09005 * 109.46789 * 239.99676 * 2 1 3
33 33 H 1.08997 * 109.47088 * 120.00348 * 2 1 3
34 34 H 1.08004 * 120.36506 * 0.02562 * 5 4 3
35 35 H 1.08003 * 120.82042 * 179.97438 * 6 5 4
36 36 H 1.08993 * 109.58560 * 6.58348 * 11 10 8
37 37 H 1.09004 * 109.70314 * 246.22617 * 11 10 8
38 38 H 1.09003 * 109.50113 * 294.68684 * 12 11 10
39 39 H 1.08996 * 109.49604 * 174.58278 * 12 11 10
40 40 H 1.08997 * 109.47278 * 296.70806 * 14 13 12
41 41 H 1.09003 * 109.46879 * 56.70431 * 14 13 12
42 42 H 1.08994 * 109.47007 * 52.62527 * 15 14 13
43 43 H 1.09002 * 109.46651 * 172.62679 * 15 14 13
44 44 H 1.08997 * 109.46945 * 292.62826 * 15 14 13
45 45 H 0.97004 * 120.00366 * 238.41698 * 16 13 12
46 46 H 0.97001 * 120.00151 * 180.02562 * 20 19 17
47 47 H 1.09005 * 109.49623 * 181.31816 * 25 13 12
48 48 H 1.08996 * 109.49780 * 301.41461 * 25 13 12
49 49 H 1.08998 * 109.58082 * 353.41181 * 26 10 8
50 50 H 1.08990 * 109.58683 * 113.83740 * 26 10 8
51 51 H 1.08004 * 119.68825 * 179.72090 * 27 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.3496 1.5248 -0.0005
5 6 3.8709 2.8151 -0.0011
6 6 5.2394 2.9896 -0.0022
7 6 6.0565 1.8493 -0.0032
8 6 7.5267 1.9811 -0.0050
9 8 8.0550 2.8883 -0.6183
10 7 8.2835 1.0959 0.6734
11 6 9.7495 1.1422 0.5856
12 6 10.3262 1.2122 2.0031
13 6 9.7825 0.0442 2.8290
14 6 10.3831 0.0912 4.2354
15 6 9.7778 -1.0272 5.0862
16 7 10.1466 -1.2203 2.1849
17 6 11.4640 -1.5215 1.9636
18 1 12.2333 -0.8168 2.2427
19 6 11.8106 -2.7327 1.3806
20 7 10.8731 -3.5918 1.0411
21 14 13.6078 -3.1439 1.0794
22 1 14.0059 -2.6647 -0.2685
23 1 14.4468 -2.4794 2.1087
24 1 13.7990 -4.6143 1.1586
25 6 8.2585 0.1487 2.9220
26 6 7.6583 0.0665 1.5150
27 6 5.4586 0.5886 -0.0084
28 7 4.1475 0.4680 -0.0020
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0277 0.0005
31 1 -0.3634 0.5138 0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8899
34 1 3.2114 3.6704 -0.0007
35 1 5.6710 3.9796 -0.0031
36 1 10.0541 2.0246 0.0231
37 1 10.1162 0.2456 0.0858
38 1 10.0345 2.1537 2.4685
39 1 11.4134 1.1501 1.9569
40 1 11.4631 -0.0430 4.1740
41 1 10.1623 1.0557 4.6927
42 1 9.8838 -1.9784 4.5647
43 1 10.2974 -1.0775 6.0431
44 1 8.7209 -0.8223 5.2570
45 1 9.4545 -1.8442 1.9151
46 1 11.1153 -4.4383 0.6340
47 1 7.8741 -0.6704 3.5299
48 1 7.9863 1.1002 3.3787
49 1 6.5833 0.2394 1.5657
50 1 7.8525 -0.9189 1.0918
51 1 6.0771 -0.2967 -0.0138
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001717237470.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:22:42
Heat of formation + Delta-G solvation = -18.001076 kcal
Electronic energy + Delta-G solvation = -31673.698830 eV
Core-core repulsion = 27574.071465 eV
Total energy + Delta-G solvation = -4099.627365 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.13025 -39.90285 -38.37454 -37.65341 -34.88463 -32.75664 -32.65434 -32.47608
-31.33041 -30.13111 -29.90854 -28.93112 -25.46814 -24.72183 -23.97963 -23.72819
-22.92353 -22.43309 -21.43487 -19.79871 -18.78912 -18.31096 -17.53021 -17.06957
-16.79804 -16.56942 -15.78586 -15.12248 -15.02364 -14.56175 -14.34739 -14.19973
-14.09911 -13.92910 -13.86757 -13.70205 -13.41552 -13.21684 -12.90341 -12.78523
-12.66717 -12.60982 -12.29811 -11.98476 -11.85763 -11.63807 -11.29539 -11.19971
-11.00295 -10.89616 -10.78763 -10.63258 -10.37198 -10.25805 -10.17317 -10.13755
-9.96474 -9.68672 -9.57193 -9.42655 -8.92606 -8.68845 -8.23712 -6.97439
-5.79866 -3.07478 0.65748 0.98759 2.71623 2.85158 3.20658 3.41323
3.47498 3.48673 3.62817 4.00971 4.51086 4.56701 4.65150 4.71144
4.71499 4.82838 4.88996 5.07289 5.09960 5.28000 5.33519 5.36820
5.43356 5.51988 5.52176 5.56282 5.62369 5.66229 5.72645 5.79169
5.87388 5.90179 5.94461 6.03939 6.10884 6.12375 6.16420 6.26261
6.37642 6.48886 6.57776 6.66413 6.76979 6.84273 6.93574 6.95356
7.06378 7.09950 7.53726 7.67907 7.70254 8.32917 8.38584 9.50777
10.06323 10.41898 11.42598
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013386 B = 0.002762 C = 0.002662
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2091.236133 B =10135.236875 C =10515.495692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.064 3.936
3 O -0.305 6.305
4 C 0.337 3.663
5 C -0.199 4.199
6 C 0.010 3.990
7 C -0.217 4.217
8 C 0.564 3.436
9 O -0.547 6.547
10 N -0.591 5.591
11 C 0.122 3.878
12 C -0.134 4.134
13 C 0.203 3.797
14 C -0.125 4.125
15 C -0.142 4.142
16 N -0.712 5.712
17 C -0.229 4.229
18 H 0.070 0.930
19 C -0.011 4.011
20 N -0.932 5.932
21 Si 0.900 3.100
22 H -0.291 1.291
23 H -0.283 1.283
24 H -0.293 1.293
25 C -0.131 4.131
26 C 0.097 3.903
27 C 0.175 3.825
28 N -0.542 5.542
29 H 0.064 0.936
30 H 0.079 0.921
31 H 0.064 0.936
32 H 0.068 0.932
33 H 0.069 0.931
34 H 0.146 0.854
35 H 0.150 0.850
36 H 0.078 0.922
37 H 0.090 0.910
38 H 0.048 0.952
39 H 0.075 0.925
40 H 0.063 0.937
41 H 0.040 0.960
42 H 0.072 0.928
43 H 0.035 0.965
44 H 0.039 0.961
45 H 0.383 0.617
46 H 0.254 0.746
47 H 0.079 0.921
48 H 0.062 0.938
49 H 0.080 0.920
50 H 0.085 0.915
51 H 0.174 0.826
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.306 9.509 1.452 19.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.011 4.011
3 O -0.212 6.212
4 C 0.159 3.841
5 C -0.219 4.219
6 C -0.015 4.015
7 C -0.222 4.222
8 C 0.351 3.649
9 O -0.427 6.427
10 N -0.322 5.322
11 C 0.001 3.999
12 C -0.174 4.174
13 C 0.111 3.889
14 C -0.164 4.164
15 C -0.199 4.199
16 N -0.354 5.354
17 C -0.360 4.360
18 H 0.088 0.912
19 C -0.207 4.207
20 N -0.581 5.581
21 Si 0.731 3.269
22 H -0.219 1.219
23 H -0.209 1.209
24 H -0.220 1.220
25 C -0.170 4.170
26 C -0.025 4.025
27 C 0.018 3.982
28 N -0.265 5.265
29 H 0.083 0.917
30 H 0.098 0.902
31 H 0.083 0.917
32 H 0.087 0.913
33 H 0.087 0.913
34 H 0.164 0.836
35 H 0.167 0.833
36 H 0.096 0.904
37 H 0.108 0.892
38 H 0.066 0.934
39 H 0.094 0.906
40 H 0.082 0.918
41 H 0.058 0.942
42 H 0.091 0.909
43 H 0.054 0.946
44 H 0.058 0.942
45 H 0.218 0.782
46 H 0.064 0.936
47 H 0.097 0.903
48 H 0.081 0.919
49 H 0.098 0.902
50 H 0.103 0.897
51 H 0.191 0.809
Dipole moment (debyes) X Y Z Total
from point charges -17.454 9.299 1.126 19.809
hybrid contribution 1.293 -0.063 -0.178 1.307
sum -16.161 9.236 0.948 18.638
Atomic orbital electron populations
1.21827 0.92964 1.03014 1.03244 1.22670 0.94749 0.80767 1.02958
1.86192 1.16831 1.31101 1.87102 1.20037 0.84074 0.90046 0.89977
1.20987 0.95487 0.95805 1.09642 1.21437 0.91561 0.99070 0.89453
1.20842 0.95117 0.95185 1.11100 1.17908 0.85700 0.81775 0.79504
1.90756 1.73891 1.33127 1.44883 1.48014 1.07757 1.31059 1.45373
1.21625 0.76838 1.03344 0.98110 1.22289 1.01417 0.98238 0.95444
1.19539 0.90617 0.87622 0.91130 1.21910 1.01283 0.96738 0.96515
1.21678 0.98705 1.00997 0.98507 1.42447 1.05434 1.16978 1.70578
1.19084 0.84223 0.99922 1.32795 0.91228 1.24658 0.96916 0.97007
1.02083 1.69633 1.30885 1.09560 1.48011 0.86301 0.85343 0.77271
0.77942 1.21869 1.20927 1.21984 1.22138 0.97108 1.02044 0.95662
1.22193 0.96734 0.92093 0.91505 1.23007 0.89117 0.96845 0.89235
1.67411 1.06214 1.32689 1.20221 0.91686 0.90175 0.91660 0.91327
0.91256 0.83573 0.83263 0.90398 0.89218 0.93377 0.90628 0.91803
0.94167 0.90899 0.94588 0.94194 0.78229 0.93620 0.90272 0.91935
0.90240 0.89737 0.80927
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16
2 C 0.06 0.56 6.02 37.16 0.22 0.78 16
3 O -0.31 -3.32 10.10 -18.19 -0.18 -3.50 16
4 C 0.34 3.99 7.49 -16.96 -0.13 3.87 16
5 C -0.20 -2.09 10.02 -39.34 -0.39 -2.48 16
6 C 0.01 0.12 9.75 -38.92 -0.38 -0.26 16
7 C -0.22 -2.91 5.29 -104.83 -0.55 -3.46 16
8 C 0.56 9.07 7.39 -12.43 -0.09 8.98 16
9 O -0.55 -10.40 16.30 5.30 0.09 -10.32 16
10 N -0.59 -9.35 2.97 -173.97 -0.52 -9.87 16
11 C 0.12 2.14 6.18 -3.71 -0.02 2.12 16
12 C -0.13 -2.28 4.68 -26.61 -0.12 -2.40 16
13 C 0.20 3.50 0.44 -131.78 -0.06 3.44 16
14 C -0.12 -2.10 4.91 -26.73 -0.13 -2.23 16
15 C -0.14 -2.31 9.19 37.16 0.34 -1.97 16
16 N -0.71 -15.17 3.38 -47.19 -0.16 -15.33 16
17 C -0.23 -5.63 8.64 -15.06 -0.13 -5.76 16
18 H 0.07 1.70 6.68 -52.49 -0.35 1.35 16
19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16
20 N -0.93 -26.13 13.06 55.49 0.72 -25.40 16
21 Si 0.90 21.48 29.55 -169.99 -5.02 16.45 16
22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16
23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
25 C -0.13 -1.92 4.56 -26.61 -0.12 -2.04 16
26 C 0.10 1.39 4.52 -3.71 -0.02 1.37 16
27 C 0.17 2.22 8.53 -17.14 -0.15 2.07 16
28 N -0.54 -6.84 9.18 -12.96 -0.12 -6.96 16
29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16
33 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16
34 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16
35 H 0.15 1.54 8.05 -52.48 -0.42 1.12 16
36 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16
37 H 0.09 1.80 7.74 -51.93 -0.40 1.40 16
38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
39 H 0.08 1.37 7.20 -51.93 -0.37 1.00 16
40 H 0.06 1.20 7.28 -51.93 -0.38 0.82 16
41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
42 H 0.07 1.40 7.50 -51.93 -0.39 1.01 16
43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
44 H 0.04 0.57 6.78 -51.93 -0.35 0.22 16
45 H 0.38 8.80 6.51 -40.82 -0.27 8.53 16
46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16
47 H 0.08 1.13 6.46 -51.93 -0.34 0.80 16
48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
49 H 0.08 0.99 4.46 -51.93 -0.23 0.75 16
50 H 0.08 1.32 6.90 -51.93 -0.36 0.96 16
51 H 0.17 2.08 6.09 -52.48 -0.32 1.76 16
LS Contribution 397.47 15.07 5.99 5.99
Total: -1.00 -29.36 397.47 -8.55 -37.91
By element:
Atomic # 1 Polarization: 17.85 SS G_CDS: -7.90 Total: 9.95 kcal
Atomic # 6 Polarization: 2.53 SS G_CDS: -1.45 Total: 1.08 kcal
Atomic # 7 Polarization: -57.49 SS G_CDS: -0.07 Total: -57.56 kcal
Atomic # 8 Polarization: -13.72 SS G_CDS: -0.10 Total: -13.81 kcal
Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal
Total LS contribution 5.99 Total: 5.99 kcal
Total: -29.36 -8.55 -37.91 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717237470.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.904 kcal
(2) G-P(sol) polarization free energy of solvation -29.355 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.451 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds