Wall clock time and date at job start Wed Apr 1 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47152 * 2 1 4 4 C 1.35499 * 117.00100 * 180.02562 * 3 2 1 5 5 C 1.39164 * 119.52975 * 179.97438 * 4 3 2 6 6 C 1.37956 * 119.26572 * 180.02562 * 5 4 3 7 7 C 1.40277 * 118.35683 * 0.02562 * 6 5 4 8 8 C 1.47615 * 120.49736 * 179.97438 * 7 6 5 9 9 O 1.21580 * 120.00064 * 324.41136 * 8 7 6 10 10 N 1.34780 * 119.99875 * 144.40906 * 8 7 6 11 11 C 1.46932 * 120.62868 * 174.58412 * 10 8 7 12 12 C 1.53192 * 108.77407 * 126.37084 * 11 10 8 13 13 C 1.53040 * 109.31180 * 54.63371 * 12 11 10 14 14 C 1.52997 * 109.46114 * 178.62458 * 13 12 11 15 15 C 1.53008 * 109.47339 * 176.70418 * 14 13 12 16 16 N 1.46502 * 109.46003 * 58.65595 * 13 12 11 17 17 C 1.36938 * 119.99883 * 58.41289 * 16 13 12 18 18 H 1.07992 * 120.00348 * 358.55843 * 17 16 13 19 19 C 1.38820 * 119.99789 * 178.55434 * 17 16 13 20 20 N 1.31617 * 120.00050 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99814 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46832 * 270.00016 * 21 19 17 23 23 H 1.48498 * 109.47039 * 29.99775 * 21 19 17 24 24 H 1.48495 * 109.46825 * 149.99953 * 21 19 17 25 25 C 1.53041 * 109.54074 * 298.63560 * 13 12 11 26 26 C 1.46930 * 120.63384 * 354.56607 * 10 8 7 27 27 C 1.39524 * 119.00508 * 0.24625 * 7 6 5 28 28 N 1.31663 * 120.62655 * 359.48150 * 27 7 6 29 29 H 1.08997 * 109.47088 * 59.99652 * 1 2 3 30 30 H 1.09003 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47277 * 299.99730 * 1 2 3 32 32 H 1.09005 * 109.46789 * 239.99676 * 2 1 3 33 33 H 1.08997 * 109.47088 * 120.00348 * 2 1 3 34 34 H 1.08004 * 120.36506 * 0.02562 * 5 4 3 35 35 H 1.08003 * 120.82042 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.58560 * 6.58348 * 11 10 8 37 37 H 1.09004 * 109.70314 * 246.22617 * 11 10 8 38 38 H 1.09003 * 109.50113 * 294.68684 * 12 11 10 39 39 H 1.08996 * 109.49604 * 174.58278 * 12 11 10 40 40 H 1.08997 * 109.47278 * 296.70806 * 14 13 12 41 41 H 1.09003 * 109.46879 * 56.70431 * 14 13 12 42 42 H 1.08994 * 109.47007 * 52.62527 * 15 14 13 43 43 H 1.09002 * 109.46651 * 172.62679 * 15 14 13 44 44 H 1.08997 * 109.46945 * 292.62826 * 15 14 13 45 45 H 0.97004 * 120.00366 * 238.41698 * 16 13 12 46 46 H 0.97001 * 120.00151 * 180.02562 * 20 19 17 47 47 H 1.09005 * 109.49623 * 181.31816 * 25 13 12 48 48 H 1.08996 * 109.49780 * 301.41461 * 25 13 12 49 49 H 1.08998 * 109.58082 * 353.41181 * 26 10 8 50 50 H 1.08990 * 109.58683 * 113.83740 * 26 10 8 51 51 H 1.08004 * 119.68825 * 179.72090 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8709 2.8151 -0.0011 6 6 5.2394 2.9896 -0.0022 7 6 6.0565 1.8493 -0.0032 8 6 7.5267 1.9811 -0.0050 9 8 8.0550 2.8883 -0.6183 10 7 8.2835 1.0959 0.6734 11 6 9.7495 1.1422 0.5856 12 6 10.3262 1.2122 2.0031 13 6 9.7825 0.0442 2.8290 14 6 10.3831 0.0912 4.2354 15 6 9.7778 -1.0272 5.0862 16 7 10.1466 -1.2203 2.1849 17 6 11.4640 -1.5215 1.9636 18 1 12.2333 -0.8168 2.2427 19 6 11.8106 -2.7327 1.3806 20 7 10.8731 -3.5918 1.0411 21 14 13.6078 -3.1439 1.0794 22 1 14.0059 -2.6647 -0.2685 23 1 14.4468 -2.4794 2.1087 24 1 13.7990 -4.6143 1.1586 25 6 8.2585 0.1487 2.9220 26 6 7.6583 0.0665 1.5150 27 6 5.4586 0.5886 -0.0084 28 7 4.1475 0.4680 -0.0020 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2114 3.6704 -0.0007 35 1 5.6710 3.9796 -0.0031 36 1 10.0541 2.0246 0.0231 37 1 10.1162 0.2456 0.0858 38 1 10.0345 2.1537 2.4685 39 1 11.4134 1.1501 1.9569 40 1 11.4631 -0.0430 4.1740 41 1 10.1623 1.0557 4.6927 42 1 9.8838 -1.9784 4.5647 43 1 10.2974 -1.0775 6.0431 44 1 8.7209 -0.8223 5.2570 45 1 9.4545 -1.8442 1.9151 46 1 11.1153 -4.4383 0.6340 47 1 7.8741 -0.6704 3.5299 48 1 7.9863 1.1002 3.3787 49 1 6.5833 0.2394 1.5657 50 1 7.8525 -0.9189 1.0918 51 1 6.0771 -0.2967 -0.0138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717237470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:42 Heat of formation + Delta-G solvation = -18.001076 kcal Electronic energy + Delta-G solvation = -31673.698830 eV Core-core repulsion = 27574.071465 eV Total energy + Delta-G solvation = -4099.627365 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.13025 -39.90285 -38.37454 -37.65341 -34.88463 -32.75664 -32.65434 -32.47608 -31.33041 -30.13111 -29.90854 -28.93112 -25.46814 -24.72183 -23.97963 -23.72819 -22.92353 -22.43309 -21.43487 -19.79871 -18.78912 -18.31096 -17.53021 -17.06957 -16.79804 -16.56942 -15.78586 -15.12248 -15.02364 -14.56175 -14.34739 -14.19973 -14.09911 -13.92910 -13.86757 -13.70205 -13.41552 -13.21684 -12.90341 -12.78523 -12.66717 -12.60982 -12.29811 -11.98476 -11.85763 -11.63807 -11.29539 -11.19971 -11.00295 -10.89616 -10.78763 -10.63258 -10.37198 -10.25805 -10.17317 -10.13755 -9.96474 -9.68672 -9.57193 -9.42655 -8.92606 -8.68845 -8.23712 -6.97439 -5.79866 -3.07478 0.65748 0.98759 2.71623 2.85158 3.20658 3.41323 3.47498 3.48673 3.62817 4.00971 4.51086 4.56701 4.65150 4.71144 4.71499 4.82838 4.88996 5.07289 5.09960 5.28000 5.33519 5.36820 5.43356 5.51988 5.52176 5.56282 5.62369 5.66229 5.72645 5.79169 5.87388 5.90179 5.94461 6.03939 6.10884 6.12375 6.16420 6.26261 6.37642 6.48886 6.57776 6.66413 6.76979 6.84273 6.93574 6.95356 7.06378 7.09950 7.53726 7.67907 7.70254 8.32917 8.38584 9.50777 10.06323 10.41898 11.42598 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013386 B = 0.002762 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.236133 B =10135.236875 C =10515.495692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.305 6.305 4 C 0.337 3.663 5 C -0.199 4.199 6 C 0.010 3.990 7 C -0.217 4.217 8 C 0.564 3.436 9 O -0.547 6.547 10 N -0.591 5.591 11 C 0.122 3.878 12 C -0.134 4.134 13 C 0.203 3.797 14 C -0.125 4.125 15 C -0.142 4.142 16 N -0.712 5.712 17 C -0.229 4.229 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.932 5.932 21 Si 0.900 3.100 22 H -0.291 1.291 23 H -0.283 1.283 24 H -0.293 1.293 25 C -0.131 4.131 26 C 0.097 3.903 27 C 0.175 3.825 28 N -0.542 5.542 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.035 0.965 44 H 0.039 0.961 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.079 0.921 48 H 0.062 0.938 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.306 9.509 1.452 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.212 6.212 4 C 0.159 3.841 5 C -0.219 4.219 6 C -0.015 4.015 7 C -0.222 4.222 8 C 0.351 3.649 9 O -0.427 6.427 10 N -0.322 5.322 11 C 0.001 3.999 12 C -0.174 4.174 13 C 0.111 3.889 14 C -0.164 4.164 15 C -0.199 4.199 16 N -0.354 5.354 17 C -0.360 4.360 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.581 5.581 21 Si 0.731 3.269 22 H -0.219 1.219 23 H -0.209 1.209 24 H -0.220 1.220 25 C -0.170 4.170 26 C -0.025 4.025 27 C 0.018 3.982 28 N -0.265 5.265 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.218 0.782 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -17.454 9.299 1.126 19.809 hybrid contribution 1.293 -0.063 -0.178 1.307 sum -16.161 9.236 0.948 18.638 Atomic orbital electron populations 1.21827 0.92964 1.03014 1.03244 1.22670 0.94749 0.80767 1.02958 1.86192 1.16831 1.31101 1.87102 1.20037 0.84074 0.90046 0.89977 1.20987 0.95487 0.95805 1.09642 1.21437 0.91561 0.99070 0.89453 1.20842 0.95117 0.95185 1.11100 1.17908 0.85700 0.81775 0.79504 1.90756 1.73891 1.33127 1.44883 1.48014 1.07757 1.31059 1.45373 1.21625 0.76838 1.03344 0.98110 1.22289 1.01417 0.98238 0.95444 1.19539 0.90617 0.87622 0.91130 1.21910 1.01283 0.96738 0.96515 1.21678 0.98705 1.00997 0.98507 1.42447 1.05434 1.16978 1.70578 1.19084 0.84223 0.99922 1.32795 0.91228 1.24658 0.96916 0.97007 1.02083 1.69633 1.30885 1.09560 1.48011 0.86301 0.85343 0.77271 0.77942 1.21869 1.20927 1.21984 1.22138 0.97108 1.02044 0.95662 1.22193 0.96734 0.92093 0.91505 1.23007 0.89117 0.96845 0.89235 1.67411 1.06214 1.32689 1.20221 0.91686 0.90175 0.91660 0.91327 0.91256 0.83573 0.83263 0.90398 0.89218 0.93377 0.90628 0.91803 0.94167 0.90899 0.94588 0.94194 0.78229 0.93620 0.90272 0.91935 0.90240 0.89737 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 2 C 0.06 0.56 6.02 37.16 0.22 0.78 16 3 O -0.31 -3.32 10.10 -18.19 -0.18 -3.50 16 4 C 0.34 3.99 7.49 -16.96 -0.13 3.87 16 5 C -0.20 -2.09 10.02 -39.34 -0.39 -2.48 16 6 C 0.01 0.12 9.75 -38.92 -0.38 -0.26 16 7 C -0.22 -2.91 5.29 -104.83 -0.55 -3.46 16 8 C 0.56 9.07 7.39 -12.43 -0.09 8.98 16 9 O -0.55 -10.40 16.30 5.30 0.09 -10.32 16 10 N -0.59 -9.35 2.97 -173.97 -0.52 -9.87 16 11 C 0.12 2.14 6.18 -3.71 -0.02 2.12 16 12 C -0.13 -2.28 4.68 -26.61 -0.12 -2.40 16 13 C 0.20 3.50 0.44 -131.78 -0.06 3.44 16 14 C -0.12 -2.10 4.91 -26.73 -0.13 -2.23 16 15 C -0.14 -2.31 9.19 37.16 0.34 -1.97 16 16 N -0.71 -15.17 3.38 -47.19 -0.16 -15.33 16 17 C -0.23 -5.63 8.64 -15.06 -0.13 -5.76 16 18 H 0.07 1.70 6.68 -52.49 -0.35 1.35 16 19 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.13 13.06 55.49 0.72 -25.40 16 21 Si 0.90 21.48 29.55 -169.99 -5.02 16.45 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 C -0.13 -1.92 4.56 -26.61 -0.12 -2.04 16 26 C 0.10 1.39 4.52 -3.71 -0.02 1.37 16 27 C 0.17 2.22 8.53 -17.14 -0.15 2.07 16 28 N -0.54 -6.84 9.18 -12.96 -0.12 -6.96 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.15 1.54 8.05 -52.48 -0.42 1.12 16 36 H 0.08 1.39 6.99 -51.93 -0.36 1.03 16 37 H 0.09 1.80 7.74 -51.93 -0.40 1.40 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 1.37 7.20 -51.93 -0.37 1.00 16 40 H 0.06 1.20 7.28 -51.93 -0.38 0.82 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.40 7.50 -51.93 -0.39 1.01 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.04 0.57 6.78 -51.93 -0.35 0.22 16 45 H 0.38 8.80 6.51 -40.82 -0.27 8.53 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.08 1.13 6.46 -51.93 -0.34 0.80 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 0.99 4.46 -51.93 -0.23 0.75 16 50 H 0.08 1.32 6.90 -51.93 -0.36 0.96 16 51 H 0.17 2.08 6.09 -52.48 -0.32 1.76 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -29.36 397.47 -8.55 -37.91 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -7.90 Total: 9.95 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.45 Total: 1.08 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.07 Total: -57.56 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.10 Total: -13.81 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.36 -8.55 -37.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717237470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.904 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds