Wall clock time and date at job start Wed Apr 1 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47152 * 2 1 4 4 C 1.35499 * 117.00100 * 180.02562 * 3 2 1 5 5 C 1.39164 * 119.52975 * 179.97438 * 4 3 2 6 6 C 1.37956 * 119.26572 * 180.02562 * 5 4 3 7 7 C 1.40277 * 118.35683 * 0.02562 * 6 5 4 8 8 C 1.47615 * 120.49736 * 179.97438 * 7 6 5 9 9 O 1.21580 * 120.00064 * 324.41136 * 8 7 6 10 10 N 1.34780 * 119.99875 * 144.40906 * 8 7 6 11 11 C 1.46932 * 120.62868 * 174.58412 * 10 8 7 12 12 C 1.53192 * 108.77407 * 126.37084 * 11 10 8 13 13 C 1.53040 * 109.31180 * 54.63371 * 12 11 10 14 14 C 1.52997 * 109.46114 * 178.62458 * 13 12 11 15 15 C 1.53008 * 109.47339 * 176.70418 * 14 13 12 16 16 N 1.46502 * 109.46003 * 58.65595 * 13 12 11 17 17 C 1.36938 * 119.99883 * 58.41289 * 16 13 12 18 18 H 1.07992 * 120.00348 * 358.55843 * 17 16 13 19 19 C 1.38820 * 119.99789 * 178.55434 * 17 16 13 20 20 N 1.31617 * 120.00050 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99814 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46832 * 270.00016 * 21 19 17 23 23 H 1.48498 * 109.47039 * 29.99775 * 21 19 17 24 24 H 1.48495 * 109.46825 * 149.99953 * 21 19 17 25 25 C 1.53041 * 109.54074 * 298.63560 * 13 12 11 26 26 C 1.46930 * 120.63384 * 354.56607 * 10 8 7 27 27 C 1.39524 * 119.00508 * 0.24625 * 7 6 5 28 28 N 1.31663 * 120.62655 * 359.48150 * 27 7 6 29 29 H 1.08997 * 109.47088 * 59.99652 * 1 2 3 30 30 H 1.09003 * 109.47268 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47277 * 299.99730 * 1 2 3 32 32 H 1.09005 * 109.46789 * 239.99676 * 2 1 3 33 33 H 1.08997 * 109.47088 * 120.00348 * 2 1 3 34 34 H 1.08004 * 120.36506 * 0.02562 * 5 4 3 35 35 H 1.08003 * 120.82042 * 179.97438 * 6 5 4 36 36 H 1.08993 * 109.58560 * 6.58348 * 11 10 8 37 37 H 1.09004 * 109.70314 * 246.22617 * 11 10 8 38 38 H 1.09003 * 109.50113 * 294.68684 * 12 11 10 39 39 H 1.08996 * 109.49604 * 174.58278 * 12 11 10 40 40 H 1.08997 * 109.47278 * 296.70806 * 14 13 12 41 41 H 1.09003 * 109.46879 * 56.70431 * 14 13 12 42 42 H 1.08994 * 109.47007 * 52.62527 * 15 14 13 43 43 H 1.09002 * 109.46651 * 172.62679 * 15 14 13 44 44 H 1.08997 * 109.46945 * 292.62826 * 15 14 13 45 45 H 0.97004 * 120.00366 * 238.41698 * 16 13 12 46 46 H 0.97001 * 120.00151 * 180.02562 * 20 19 17 47 47 H 1.09005 * 109.49623 * 181.31816 * 25 13 12 48 48 H 1.08996 * 109.49780 * 301.41461 * 25 13 12 49 49 H 1.08998 * 109.58082 * 353.41181 * 26 10 8 50 50 H 1.08990 * 109.58683 * 113.83740 * 26 10 8 51 51 H 1.08004 * 119.68825 * 179.72090 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5248 -0.0005 5 6 3.8709 2.8151 -0.0011 6 6 5.2394 2.9896 -0.0022 7 6 6.0565 1.8493 -0.0032 8 6 7.5267 1.9811 -0.0050 9 8 8.0550 2.8883 -0.6183 10 7 8.2835 1.0959 0.6734 11 6 9.7495 1.1422 0.5856 12 6 10.3262 1.2122 2.0031 13 6 9.7825 0.0442 2.8290 14 6 10.3831 0.0912 4.2354 15 6 9.7778 -1.0272 5.0862 16 7 10.1466 -1.2203 2.1849 17 6 11.4640 -1.5215 1.9636 18 1 12.2333 -0.8168 2.2427 19 6 11.8106 -2.7327 1.3806 20 7 10.8731 -3.5918 1.0411 21 14 13.6078 -3.1439 1.0794 22 1 14.0059 -2.6647 -0.2685 23 1 14.4468 -2.4794 2.1087 24 1 13.7990 -4.6143 1.1586 25 6 8.2585 0.1487 2.9220 26 6 7.6583 0.0665 1.5150 27 6 5.4586 0.5886 -0.0084 28 7 4.1475 0.4680 -0.0020 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.2114 3.6704 -0.0007 35 1 5.6710 3.9796 -0.0031 36 1 10.0541 2.0246 0.0231 37 1 10.1162 0.2456 0.0858 38 1 10.0345 2.1537 2.4685 39 1 11.4134 1.1501 1.9569 40 1 11.4631 -0.0430 4.1740 41 1 10.1623 1.0557 4.6927 42 1 9.8838 -1.9784 4.5647 43 1 10.2974 -1.0775 6.0431 44 1 8.7209 -0.8223 5.2570 45 1 9.4545 -1.8442 1.9151 46 1 11.1153 -4.4383 0.6340 47 1 7.8741 -0.6704 3.5299 48 1 7.9863 1.1002 3.3787 49 1 6.5833 0.2394 1.5657 50 1 7.8525 -0.9189 1.0918 51 1 6.0771 -0.2967 -0.0138 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717237470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:41 Heat of formation + Delta-G solvation = -35.951995 kcal Electronic energy + Delta-G solvation = -31674.477240 eV Core-core repulsion = 27574.071465 eV Total energy + Delta-G solvation = -4100.405775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.15698 -41.06297 -39.57293 -38.75565 -36.30713 -34.46619 -33.67917 -33.36747 -32.39518 -31.53300 -31.15816 -30.40362 -26.78778 -25.79606 -25.46118 -24.91871 -24.18419 -23.26670 -22.68895 -21.08362 -19.82875 -19.55039 -18.91688 -18.67008 -17.86996 -17.37759 -17.07107 -16.50081 -16.28361 -15.88530 -15.62413 -15.46989 -15.30640 -15.13544 -15.03869 -14.90231 -14.54148 -14.37881 -14.21155 -14.07257 -13.71397 -13.44919 -13.31496 -13.29055 -13.02774 -12.83929 -12.77959 -12.57766 -12.49015 -12.30273 -12.15567 -12.07212 -11.77359 -11.71037 -11.56348 -11.42206 -11.24315 -11.09045 -10.87576 -10.76249 -10.65114 -9.73850 -9.51266 -8.82610 -7.83026 -5.06064 -0.32696 0.08878 1.48635 1.51060 1.56263 1.65835 1.89819 1.99027 2.62732 2.63230 3.09876 3.40273 3.51929 3.70198 3.83063 3.89399 3.93907 3.97214 4.09362 4.10558 4.18392 4.20895 4.26591 4.47038 4.48362 4.55565 4.56670 4.57866 4.65116 4.70983 4.77487 4.81391 4.87179 4.89032 4.97429 4.98995 5.06116 5.15387 5.17768 5.21093 5.28561 5.30856 5.37593 5.39453 5.55863 5.64412 5.67476 5.74950 6.10975 6.39899 6.40928 6.61041 7.05108 7.48453 8.24648 8.48415 9.40280 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013386 B = 0.002762 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.236133 B =10135.236875 C =10515.495692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.308 6.308 4 C 0.330 3.670 5 C -0.187 4.187 6 C 0.013 3.987 7 C -0.229 4.229 8 C 0.565 3.435 9 O -0.581 6.581 10 N -0.590 5.590 11 C 0.130 3.870 12 C -0.127 4.127 13 C 0.196 3.804 14 C -0.122 4.122 15 C -0.135 4.135 16 N -0.714 5.714 17 C -0.203 4.203 18 H 0.070 0.930 19 C -0.071 4.071 20 N -0.965 5.965 21 Si 0.948 3.052 22 H -0.297 1.297 23 H -0.275 1.275 24 H -0.304 1.304 25 C -0.125 4.125 26 C 0.103 3.897 27 C 0.174 3.826 28 N -0.552 5.552 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.175 0.825 35 H 0.162 0.838 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.037 0.963 43 H 0.047 0.953 44 H 0.063 0.937 45 H 0.374 0.626 46 H 0.245 0.755 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.067 0.933 51 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.424 11.309 2.741 22.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 O -0.214 6.214 4 C 0.152 3.848 5 C -0.207 4.207 6 C -0.012 4.012 7 C -0.235 4.235 8 C 0.355 3.645 9 O -0.462 6.462 10 N -0.321 5.321 11 C 0.008 3.992 12 C -0.167 4.167 13 C 0.106 3.894 14 C -0.161 4.161 15 C -0.193 4.193 16 N -0.354 5.354 17 C -0.336 4.336 18 H 0.088 0.912 19 C -0.263 4.263 20 N -0.618 5.618 21 Si 0.781 3.219 22 H -0.225 1.225 23 H -0.200 1.200 24 H -0.231 1.231 25 C -0.163 4.163 26 C -0.020 4.020 27 C 0.017 3.983 28 N -0.276 5.276 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.193 0.807 35 H 0.180 0.820 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.208 0.792 46 H 0.054 0.946 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.122 0.878 50 H 0.085 0.915 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -19.582 11.133 2.452 22.659 hybrid contribution 1.841 -0.528 -0.566 1.997 sum -17.741 10.605 1.886 20.755 Atomic orbital electron populations 1.21834 0.90869 1.04237 1.03505 1.22861 0.96394 0.79859 1.02553 1.86209 1.16205 1.32256 1.86767 1.20352 0.84481 0.90441 0.89542 1.21255 0.95309 0.96224 1.07919 1.21613 0.91844 0.99013 0.88725 1.20654 0.93395 0.96263 1.13184 1.18272 0.86773 0.80984 0.78488 1.90734 1.74774 1.34561 1.46150 1.48008 1.06978 1.31437 1.45641 1.21344 0.78273 1.01455 0.98166 1.22211 1.00430 0.98978 0.95052 1.19801 0.92851 0.85634 0.91110 1.21863 0.99705 0.98412 0.96139 1.21600 1.00405 0.98856 0.98394 1.42537 1.04023 1.18270 1.70613 1.19312 0.85693 0.98903 1.29661 0.91164 1.25194 0.99391 0.97786 1.03934 1.69753 1.31968 1.09744 1.50291 0.85497 0.82635 0.76256 0.77561 1.22466 1.20046 1.23093 1.22105 0.94703 1.03474 0.96007 1.22210 0.98025 0.90800 0.90925 1.22956 0.89279 0.96632 0.89428 1.67415 1.06068 1.33387 1.20696 0.91464 0.88494 0.91310 0.91879 0.91538 0.80716 0.82014 0.90908 0.92454 0.91387 0.92097 0.94156 0.91403 0.94370 0.93434 0.91846 0.79236 0.94643 0.89469 0.89801 0.87813 0.91474 0.80951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.06 0.92 6.02 71.98 0.43 1.36 16 3 O -0.31 -6.01 10.10 -88.01 -0.89 -6.90 16 4 C 0.33 7.10 7.49 84.83 0.64 7.73 16 5 C -0.19 -3.38 10.02 22.43 0.22 -3.15 16 6 C 0.01 0.28 9.75 22.70 0.22 0.50 16 7 C -0.23 -5.81 5.29 -20.00 -0.11 -5.92 16 8 C 0.57 17.78 7.39 86.72 0.64 18.42 16 9 O -0.58 -21.87 16.30 -3.97 -0.06 -21.94 16 10 N -0.59 -18.38 2.97 -822.57 -2.44 -20.82 16 11 C 0.13 4.60 6.18 86.36 0.53 5.13 16 12 C -0.13 -4.21 4.68 30.67 0.14 -4.07 16 13 C 0.20 6.55 0.44 3.63 0.00 6.56 16 14 C -0.12 -3.86 4.91 30.60 0.15 -3.71 16 15 C -0.14 -4.15 9.19 71.98 0.66 -3.49 16 16 N -0.71 -30.67 3.38 -303.22 -1.02 -31.70 16 17 C -0.20 -10.12 8.64 84.04 0.73 -9.40 16 18 H 0.07 3.46 6.68 -2.91 -0.02 3.44 16 19 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 20 N -0.97 -55.79 13.06 21.65 0.28 -55.51 16 21 Si 0.95 45.18 29.55 68.60 2.03 47.21 16 22 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 25 C -0.12 -3.38 4.56 30.67 0.14 -3.24 16 26 C 0.10 2.82 4.52 86.36 0.39 3.21 16 27 C 0.17 4.21 8.53 85.03 0.73 4.94 16 28 N -0.55 -13.10 9.18 -307.81 -2.82 -15.93 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.06 1.07 8.10 -2.38 -0.02 1.05 16 33 H 0.07 1.09 8.10 -2.39 -0.02 1.07 16 34 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.16 2.93 8.05 -2.91 -0.02 2.91 16 36 H 0.07 2.64 6.99 -2.39 -0.02 2.62 16 37 H 0.06 2.40 7.74 -2.38 -0.02 2.38 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 2.19 7.20 -2.39 -0.02 2.18 16 40 H 0.04 1.46 7.28 -2.39 -0.02 1.44 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.43 7.50 -2.39 -0.02 1.42 16 43 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.63 6.78 -2.39 -0.02 1.62 16 45 H 0.37 17.53 6.51 -92.71 -0.60 16.92 16 46 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 47 H 0.09 2.27 6.46 -2.38 -0.02 2.26 16 48 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.10 2.39 4.46 -2.39 -0.01 2.38 16 50 H 0.07 2.11 6.90 -2.39 -0.02 2.10 16 51 H 0.17 4.08 6.09 -2.91 -0.02 4.07 16 Total: -1.00 -64.22 397.47 2.13 -62.09 By element: Atomic # 1 Polarization: 32.41 SS G_CDS: 0.34 Total: 32.75 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 6.73 Total: 10.74 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -6.01 Total: -123.95 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -0.95 Total: -28.84 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -64.22 2.13 -62.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717237470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.138 kcal (2) G-P(sol) polarization free energy of solvation -64.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds