Wall clock time and date at job start Wed Apr 1 2020 05:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 N 1.46494 * 109.44913 * 305.18778 * 3 2 1 5 5 C 1.36942 * 119.99864 * 296.07063 * 4 3 2 6 6 H 1.07997 * 120.00528 * 5.51748 * 5 4 3 7 7 C 1.38819 * 119.99634 * 185.51933 * 5 4 3 8 8 N 1.31611 * 120.00310 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99585 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47600 * 59.99868 * 9 7 5 11 11 H 1.48507 * 109.46878 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47170 * 299.99899 * 9 7 5 13 13 C 1.53050 * 109.45910 * 185.22302 * 3 2 1 14 14 C 1.53190 * 109.30973 * 178.61526 * 13 3 2 15 15 N 1.46923 * 108.77800 * 54.63220 * 14 13 3 16 16 C 1.34779 * 120.62655 * 126.36479 * 15 14 13 17 17 O 1.21276 * 120.00251 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99818 * 180.02562 * 16 15 14 19 19 N 1.46497 * 109.47452 * 180.02562 * 18 16 15 20 20 C 1.35770 * 119.62741 * 89.99877 * 19 18 16 21 21 C 1.35351 * 120.70383 * 180.02562 * 20 19 18 22 22 C 1.40193 * 119.94809 * 0.27591 * 21 20 19 23 23 C 1.50697 * 120.37020 * 179.70081 * 22 21 20 24 24 C 1.36410 * 119.26429 * 359.46502 * 22 21 20 25 25 C 1.34664 * 119.62447 * 270.02440 * 19 18 16 26 26 O 1.22056 * 119.98395 * 359.97311 * 25 19 18 27 27 C 1.46923 * 118.73859 * 306.64442 * 15 14 13 28 28 C 1.52759 * 109.00844 * 53.30911 * 27 15 14 29 29 H 1.08997 * 109.47039 * 294.16342 * 1 2 3 30 30 H 1.09006 * 109.46717 * 54.16075 * 1 2 3 31 31 H 1.09002 * 109.46917 * 174.15724 * 1 2 3 32 32 H 1.09003 * 109.47344 * 240.00315 * 2 1 3 33 33 H 1.09001 * 109.46992 * 119.99850 * 2 1 3 34 34 H 0.97003 * 120.00142 * 116.07401 * 4 3 2 35 35 H 0.97004 * 120.00146 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.49386 * 58.66062 * 13 3 2 37 37 H 1.08999 * 109.49594 * 298.56381 * 13 3 2 38 38 H 1.09003 * 109.58620 * 294.84425 * 14 13 3 39 39 H 1.09004 * 109.58223 * 174.42235 * 14 13 3 40 40 H 1.08999 * 109.47528 * 60.00097 * 18 16 15 41 41 H 1.09007 * 109.47520 * 300.00126 * 18 16 15 42 42 H 1.07999 * 119.64586 * 0.04204 * 20 19 18 43 43 H 1.07995 * 120.02098 * 180.02562 * 21 20 19 44 44 H 1.08999 * 109.46632 * 89.99630 * 23 22 21 45 45 H 1.08993 * 109.47650 * 210.00090 * 23 22 21 46 46 H 1.09004 * 109.46915 * 330.00302 * 23 22 21 47 47 H 1.07993 * 120.34917 * 180.24526 * 24 22 21 48 48 H 1.09007 * 109.58542 * 173.14604 * 27 15 14 49 49 H 1.08998 * 109.58544 * 293.55953 * 27 15 14 50 50 H 1.09000 * 109.55910 * 185.55125 * 28 27 15 51 51 H 1.08997 * 109.38801 * 65.51532 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4521 2.1677 -1.1289 5 6 1.7400 1.7865 -2.4123 6 1 2.3275 0.8985 -2.5929 7 6 1.2768 2.5415 -3.4811 8 7 0.5612 3.6240 -3.2611 9 14 1.6690 2.0210 -5.2317 10 1 1.1136 0.6667 -5.4818 11 1 1.0631 2.9872 -6.1829 12 1 3.1415 1.9950 -5.4223 13 6 3.5648 1.4442 -0.1314 14 6 4.0687 2.8905 -0.1658 15 7 3.5644 3.5954 1.0206 16 6 4.4105 4.2439 1.8452 17 8 5.6004 4.2498 1.6108 18 6 3.8779 4.9619 3.0584 19 7 4.9882 5.5827 3.7851 20 6 5.3657 6.8503 3.4786 21 6 6.3888 7.4448 4.1357 22 6 7.0741 6.7478 5.1407 23 6 8.2190 7.3980 5.8738 24 6 6.6900 5.4762 5.4510 25 6 5.6232 4.8893 4.7492 26 8 5.2723 3.7505 5.0134 27 6 2.1210 3.5745 1.2943 28 6 1.6384 2.1253 1.3094 29 1 -0.3633 0.4207 0.9376 30 1 -0.3633 0.6018 -0.8332 31 1 -0.3633 -1.0224 -0.1046 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.8588 2.9180 -0.9674 35 1 0.2378 4.1518 -4.0080 36 1 3.8511 0.9371 -1.0527 37 1 4.0040 0.9262 0.7212 38 1 3.7031 3.3834 -1.0666 39 1 5.1587 2.8978 -0.1595 40 1 3.3708 4.2493 3.7089 41 1 3.1736 5.7324 2.7447 42 1 4.8438 7.3902 2.7023 43 1 6.6796 8.4537 3.8832 44 1 7.8384 7.9203 6.7515 45 1 8.9313 6.6344 6.1857 46 1 8.7152 8.1100 5.2141 47 1 7.2030 4.9247 6.2249 48 1 1.9263 4.0333 2.2638 49 1 1.5934 4.1245 0.5151 50 1 0.5536 2.1030 1.4135 51 1 2.0952 1.6005 2.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717241004.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:55 Heat of formation + Delta-G solvation = -22.170704 kcal Electronic energy + Delta-G solvation = -31834.973284 eV Core-core repulsion = 27735.165110 eV Total energy + Delta-G solvation = -4099.808174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59263 -39.89634 -38.04255 -37.09485 -35.38756 -34.83602 -32.62996 -31.40243 -30.41269 -30.12929 -29.56164 -29.03442 -27.10817 -24.82990 -23.83745 -23.79747 -22.89881 -22.02049 -21.26309 -19.65076 -18.25683 -17.65522 -17.61247 -17.11574 -17.08019 -16.14706 -15.69276 -15.34783 -15.02599 -14.63513 -14.39154 -14.23036 -14.10506 -13.85457 -13.82005 -13.66347 -13.46328 -13.20805 -13.00380 -12.83891 -12.49331 -12.45229 -12.16509 -11.97068 -11.89285 -11.79960 -11.72993 -11.30615 -11.16137 -10.88835 -10.77947 -10.61962 -10.38959 -10.28142 -10.23117 -10.02341 -9.97899 -9.71504 -9.54576 -9.38115 -8.94687 -8.27088 -8.07317 -6.98032 -5.81848 -3.09622 0.69507 1.77641 2.37966 2.67908 3.21308 3.40521 3.45727 3.46897 3.60501 4.34247 4.43334 4.46767 4.55150 4.58547 4.79823 4.93638 5.03094 5.04797 5.18711 5.25449 5.27198 5.34819 5.38153 5.52618 5.55404 5.57045 5.64964 5.78691 5.81872 5.85322 5.93175 5.97705 6.03488 6.14029 6.16164 6.20906 6.27154 6.37550 6.39695 6.49104 6.59537 6.65845 6.77744 6.86441 6.91771 6.96610 7.05817 7.15151 7.63940 7.69380 7.97979 8.27195 8.37232 9.49049 10.04472 10.40703 11.40460 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002680 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.258584 B =10445.461297 C =11281.121692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.125 4.125 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.229 4.229 6 H 0.068 0.932 7 C -0.010 4.010 8 N -0.933 5.933 9 Si 0.900 3.100 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.287 1.287 13 C -0.132 4.132 14 C 0.123 3.877 15 N -0.592 5.592 16 C 0.500 3.500 17 O -0.541 6.541 18 C 0.070 3.930 19 N -0.480 5.480 20 C 0.149 3.851 21 C -0.234 4.234 22 C 0.015 3.985 23 C -0.122 4.122 24 C -0.250 4.250 25 C 0.522 3.478 26 O -0.552 6.552 27 C 0.108 3.892 28 C -0.133 4.133 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.383 0.617 35 H 0.254 0.746 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.120 0.880 42 H 0.161 0.839 43 H 0.144 0.856 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.145 0.855 48 H 0.070 0.930 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.672 8.369 16.740 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.165 4.165 3 C 0.111 3.889 4 N -0.353 5.353 5 C -0.360 4.360 6 H 0.086 0.914 7 C -0.206 4.206 8 N -0.581 5.581 9 Si 0.731 3.269 10 H -0.214 1.214 11 H -0.219 1.219 12 H -0.214 1.214 13 C -0.173 4.173 14 C 0.002 3.998 15 N -0.324 5.324 16 C 0.285 3.715 17 O -0.418 6.418 18 C -0.055 4.055 19 N -0.190 5.190 20 C 0.022 3.978 21 C -0.257 4.257 22 C 0.011 3.989 23 C -0.178 4.178 24 C -0.271 4.271 25 C 0.324 3.676 26 O -0.434 6.434 27 C -0.015 4.015 28 C -0.171 4.171 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.138 0.862 42 H 0.178 0.822 43 H 0.162 0.838 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.163 0.837 48 H 0.089 0.911 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.098 7.555 16.593 19.565 hybrid contribution -0.092 -0.073 -1.204 1.210 sum 7.006 7.482 15.389 18.490 Atomic orbital electron populations 1.21667 0.96091 1.00161 1.01920 1.21918 0.96359 0.98142 1.00032 1.19539 0.90872 0.91203 0.87301 1.42422 1.55469 1.37081 1.00372 1.19040 1.27638 1.06369 0.82944 0.91359 1.24664 1.01070 0.97363 0.97523 1.69623 1.40849 1.17394 1.30279 0.86382 0.77816 0.77417 0.85257 1.21439 1.21888 1.21375 1.22269 0.98106 0.95571 1.01306 1.21612 0.98722 0.92686 0.86790 1.48073 1.07364 1.51231 1.25767 1.20483 0.86829 0.80191 0.83960 1.90709 1.15447 1.61851 1.73831 1.21895 0.88932 1.00479 0.94197 1.45088 1.29737 1.12901 1.31266 1.21919 0.95301 0.84122 0.96498 1.20491 1.00294 1.02487 1.02417 1.20188 0.93578 0.93032 0.92088 1.20915 0.95674 1.01068 1.00190 1.21895 1.02067 0.97026 1.06158 1.17075 0.84062 0.86356 0.80084 1.90953 1.67160 1.17503 1.67830 1.21724 0.80218 0.98513 1.01041 1.22049 1.01506 0.94979 0.98589 0.94244 0.90468 0.94764 0.92268 0.94070 0.78280 0.93593 0.90604 0.93416 0.89100 0.90701 0.85384 0.86194 0.82155 0.83793 0.90197 0.90883 0.90798 0.83686 0.91129 0.89638 0.90295 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.41 37.16 0.35 -2.00 16 2 C -0.12 -2.13 4.78 -26.73 -0.13 -2.26 16 3 C 0.20 3.55 0.44 -131.78 -0.06 3.49 16 4 N -0.71 -15.10 3.00 -47.19 -0.14 -15.24 16 5 C -0.23 -5.62 8.59 -15.05 -0.13 -5.75 16 6 H 0.07 1.68 6.78 -52.49 -0.36 1.33 16 7 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 8 N -0.93 -25.91 13.06 55.49 0.73 -25.19 16 9 Si 0.90 21.44 29.55 -169.99 -5.02 16.42 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 C -0.13 -2.36 4.64 -26.61 -0.12 -2.49 16 14 C 0.12 2.25 6.18 -3.71 -0.02 2.23 16 15 N -0.59 -9.44 2.98 -173.03 -0.52 -9.96 16 16 C 0.50 8.03 7.76 -10.98 -0.09 7.95 16 17 O -0.54 -10.73 15.84 5.56 0.09 -10.64 16 18 C 0.07 0.84 4.16 -5.20 -0.02 0.82 16 19 N -0.48 -6.08 2.07 -121.06 -0.25 -6.33 16 20 C 0.15 1.42 10.28 -16.84 -0.17 1.25 16 21 C -0.23 -1.99 9.71 -39.88 -0.39 -2.38 16 22 C 0.01 0.14 5.89 -104.55 -0.62 -0.48 16 23 C -0.12 -0.74 10.03 36.00 0.36 -0.38 16 24 C -0.25 -3.06 9.65 -39.38 -0.38 -3.44 16 25 C 0.52 7.94 7.40 -15.44 -0.11 7.83 16 26 O -0.55 -10.41 16.64 4.87 0.08 -10.32 16 27 C 0.11 1.48 6.05 -3.94 -0.02 1.46 16 28 C -0.13 -1.94 4.71 -26.84 -0.13 -2.07 16 29 H 0.04 0.58 6.83 -51.93 -0.35 0.23 16 30 H 0.08 1.52 7.26 -51.93 -0.38 1.14 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.38 8.70 6.61 -40.82 -0.27 8.43 16 35 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.08 1.44 7.22 -51.93 -0.37 1.06 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.90 7.62 -51.93 -0.40 1.50 16 39 H 0.07 1.43 7.01 -51.93 -0.36 1.06 16 40 H 0.13 1.53 6.93 -51.93 -0.36 1.17 16 41 H 0.12 0.95 7.82 -51.92 -0.41 0.55 16 42 H 0.16 1.03 8.04 -52.49 -0.42 0.61 16 43 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 46 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 47 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 48 H 0.07 0.72 5.94 -51.92 -0.31 0.41 16 49 H 0.09 1.31 7.02 -51.93 -0.36 0.94 16 50 H 0.08 1.10 6.64 -51.93 -0.34 0.75 16 51 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -33.34 400.26 -8.80 -42.14 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -8.02 Total: 9.65 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.77 Total: 3.43 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.18 Total: -56.72 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.96 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.34 -8.80 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717241004.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.970 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds