Wall clock time and date at job start Wed Apr 1 2020 05:26:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53002 * 109.47071 * 2 1
4 4 N 1.46494 * 109.44913 * 305.18778 * 3 2 1
5 5 C 1.36942 * 119.99864 * 296.07063 * 4 3 2
6 6 H 1.07997 * 120.00528 * 5.51748 * 5 4 3
7 7 C 1.38819 * 119.99634 * 185.51933 * 5 4 3
8 8 N 1.31611 * 120.00310 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 119.99585 * 180.02562 * 7 5 4
10 10 H 1.48496 * 109.47600 * 59.99868 * 9 7 5
11 11 H 1.48507 * 109.46878 * 179.97438 * 9 7 5
12 12 H 1.48501 * 109.47170 * 299.99899 * 9 7 5
13 13 C 1.53050 * 109.45910 * 185.22302 * 3 2 1
14 14 C 1.53190 * 109.30973 * 178.61526 * 13 3 2
15 15 N 1.46923 * 108.77800 * 54.63220 * 14 13 3
16 16 C 1.34779 * 120.62655 * 126.36479 * 15 14 13
17 17 O 1.21276 * 120.00251 * 0.02562 * 16 15 14
18 18 C 1.50700 * 119.99818 * 180.02562 * 16 15 14
19 19 N 1.46497 * 109.47452 * 180.02562 * 18 16 15
20 20 C 1.35770 * 119.62741 * 89.99877 * 19 18 16
21 21 C 1.35351 * 120.70383 * 180.02562 * 20 19 18
22 22 C 1.40193 * 119.94809 * 0.27591 * 21 20 19
23 23 C 1.50697 * 120.37020 * 179.70081 * 22 21 20
24 24 C 1.36410 * 119.26429 * 359.46502 * 22 21 20
25 25 C 1.34664 * 119.62447 * 270.02440 * 19 18 16
26 26 O 1.22056 * 119.98395 * 359.97311 * 25 19 18
27 27 C 1.46923 * 118.73859 * 306.64442 * 15 14 13
28 28 C 1.52759 * 109.00844 * 53.30911 * 27 15 14
29 29 H 1.08997 * 109.47039 * 294.16342 * 1 2 3
30 30 H 1.09006 * 109.46717 * 54.16075 * 1 2 3
31 31 H 1.09002 * 109.46917 * 174.15724 * 1 2 3
32 32 H 1.09003 * 109.47344 * 240.00315 * 2 1 3
33 33 H 1.09001 * 109.46992 * 119.99850 * 2 1 3
34 34 H 0.97003 * 120.00142 * 116.07401 * 4 3 2
35 35 H 0.97004 * 120.00146 * 179.97438 * 8 7 5
36 36 H 1.08998 * 109.49386 * 58.66062 * 13 3 2
37 37 H 1.08999 * 109.49594 * 298.56381 * 13 3 2
38 38 H 1.09003 * 109.58620 * 294.84425 * 14 13 3
39 39 H 1.09004 * 109.58223 * 174.42235 * 14 13 3
40 40 H 1.08999 * 109.47528 * 60.00097 * 18 16 15
41 41 H 1.09007 * 109.47520 * 300.00126 * 18 16 15
42 42 H 1.07999 * 119.64586 * 0.04204 * 20 19 18
43 43 H 1.07995 * 120.02098 * 180.02562 * 21 20 19
44 44 H 1.08999 * 109.46632 * 89.99630 * 23 22 21
45 45 H 1.08993 * 109.47650 * 210.00090 * 23 22 21
46 46 H 1.09004 * 109.46915 * 330.00302 * 23 22 21
47 47 H 1.07993 * 120.34917 * 180.24526 * 24 22 21
48 48 H 1.09007 * 109.58542 * 173.14604 * 27 15 14
49 49 H 1.08998 * 109.58544 * 293.55953 * 27 15 14
50 50 H 1.09000 * 109.55910 * 185.55125 * 28 27 15
51 51 H 1.08997 * 109.38801 * 65.51532 * 28 27 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 1.4521 2.1677 -1.1289
5 6 1.7400 1.7865 -2.4123
6 1 2.3275 0.8985 -2.5929
7 6 1.2768 2.5415 -3.4811
8 7 0.5612 3.6240 -3.2611
9 14 1.6690 2.0210 -5.2317
10 1 1.1136 0.6667 -5.4818
11 1 1.0631 2.9872 -6.1829
12 1 3.1415 1.9950 -5.4223
13 6 3.5648 1.4442 -0.1314
14 6 4.0687 2.8905 -0.1658
15 7 3.5644 3.5954 1.0206
16 6 4.4105 4.2439 1.8452
17 8 5.6004 4.2498 1.6108
18 6 3.8779 4.9619 3.0584
19 7 4.9882 5.5827 3.7851
20 6 5.3657 6.8503 3.4786
21 6 6.3888 7.4448 4.1357
22 6 7.0741 6.7478 5.1407
23 6 8.2190 7.3980 5.8738
24 6 6.6900 5.4762 5.4510
25 6 5.6232 4.8893 4.7492
26 8 5.2723 3.7505 5.0134
27 6 2.1210 3.5745 1.2943
28 6 1.6384 2.1253 1.3094
29 1 -0.3633 0.4207 0.9376
30 1 -0.3633 0.6018 -0.8332
31 1 -0.3633 -1.0224 -0.1046
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5138 0.8900
34 1 0.8588 2.9180 -0.9674
35 1 0.2378 4.1518 -4.0080
36 1 3.8511 0.9371 -1.0527
37 1 4.0040 0.9262 0.7212
38 1 3.7031 3.3834 -1.0666
39 1 5.1587 2.8978 -0.1595
40 1 3.3708 4.2493 3.7089
41 1 3.1736 5.7324 2.7447
42 1 4.8438 7.3902 2.7023
43 1 6.6796 8.4537 3.8832
44 1 7.8384 7.9203 6.7515
45 1 8.9313 6.6344 6.1857
46 1 8.7152 8.1100 5.2141
47 1 7.2030 4.9247 6.2249
48 1 1.9263 4.0333 2.2638
49 1 1.5934 4.1245 0.5151
50 1 0.5536 2.1030 1.4135
51 1 2.0952 1.6005 2.1484
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001717241004.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:26:54
Heat of formation + Delta-G solvation = -42.195313 kcal
Electronic energy + Delta-G solvation = -31835.841616 eV
Core-core repulsion = 27735.165110 eV
Total energy + Delta-G solvation = -4100.676506 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.55555 -41.18337 -39.43460 -38.08827 -36.34334 -36.20149 -34.44902 -32.66363
-31.54168 -31.36047 -30.83707 -30.26022 -28.03083 -26.26979 -25.51773 -24.64881
-24.24443 -23.12038 -22.37365 -20.95437 -19.68865 -18.93923 -18.67239 -18.52471
-18.28130 -17.04100 -16.87952 -16.70355 -16.27202 -16.12910 -15.69107 -15.40080
-15.38009 -15.17378 -15.03469 -14.75617 -14.59228 -14.40792 -14.14835 -13.97240
-13.62269 -13.45617 -13.31497 -13.10414 -13.01036 -12.91832 -12.83927 -12.81354
-12.56788 -12.45534 -12.32079 -12.20027 -12.08689 -11.84166 -11.53810 -11.41038
-11.21608 -11.07960 -10.93561 -10.79977 -10.52133 -9.66760 -8.97928 -8.82682
-7.84498 -5.07547 -0.11262 0.92544 1.43298 1.46522 1.48299 1.49942
1.53731 2.04917 2.61390 2.67155 3.35973 3.49797 3.62632 3.72652
3.80896 3.85830 3.88890 4.03855 4.08851 4.13410 4.18503 4.24200
4.34100 4.39542 4.47739 4.53946 4.60961 4.67541 4.75981 4.79010
4.82268 4.84828 4.86071 4.91403 5.05074 5.09947 5.12301 5.15095
5.24476 5.28798 5.36126 5.38304 5.49350 5.51110 5.63311 5.65369
5.67347 5.75234 6.06861 6.38128 6.39201 6.95520 7.02606 7.47631
8.22586 8.48681 9.38197
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017363 B = 0.002680 C = 0.002481
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1612.258584 B =10445.461297 C =11281.121692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.122 4.122
3 C 0.197 3.803
4 N -0.710 5.710
5 C -0.206 4.206
6 H 0.065 0.935
7 C -0.066 4.066
8 N -0.962 5.962
9 Si 0.946 3.054
10 H -0.286 1.286
11 H -0.301 1.301
12 H -0.288 1.288
13 C -0.126 4.126
14 C 0.133 3.867
15 N -0.591 5.591
16 C 0.496 3.504
17 O -0.585 6.585
18 C 0.075 3.925
19 N -0.483 5.483
20 C 0.136 3.864
21 C -0.229 4.229
22 C 0.033 3.967
23 C -0.122 4.122
24 C -0.290 4.290
25 C 0.502 3.498
26 O -0.610 6.610
27 C 0.108 3.892
28 C -0.128 4.128
29 H 0.061 0.939
30 H 0.042 0.958
31 H 0.045 0.955
32 H 0.037 0.963
33 H 0.064 0.936
34 H 0.376 0.624
35 H 0.246 0.754
36 H 0.057 0.943
37 H 0.057 0.943
38 H 0.060 0.940
39 H 0.060 0.940
40 H 0.131 0.869
41 H 0.169 0.831
42 H 0.196 0.804
43 H 0.182 0.818
44 H 0.099 0.901
45 H 0.073 0.927
46 H 0.093 0.907
47 H 0.142 0.858
48 H 0.116 0.884
49 H 0.071 0.929
50 H 0.093 0.907
51 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.642 10.112 18.589 22.179
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.162 4.162
3 C 0.106 3.894
4 N -0.351 5.351
5 C -0.338 4.338
6 H 0.083 0.917
7 C -0.259 4.259
8 N -0.614 5.614
9 Si 0.778 3.222
10 H -0.213 1.213
11 H -0.228 1.228
12 H -0.215 1.215
13 C -0.166 4.166
14 C 0.010 3.990
15 N -0.323 5.323
16 C 0.284 3.716
17 O -0.466 6.466
18 C -0.050 4.050
19 N -0.192 5.192
20 C 0.010 3.990
21 C -0.251 4.251
22 C 0.029 3.971
23 C -0.178 4.178
24 C -0.311 4.311
25 C 0.308 3.692
26 O -0.498 6.498
27 C -0.014 4.014
28 C -0.166 4.166
29 H 0.080 0.920
30 H 0.061 0.939
31 H 0.064 0.936
32 H 0.056 0.944
33 H 0.082 0.918
34 H 0.210 0.790
35 H 0.055 0.945
36 H 0.076 0.924
37 H 0.076 0.924
38 H 0.078 0.922
39 H 0.079 0.921
40 H 0.149 0.851
41 H 0.186 0.814
42 H 0.213 0.787
43 H 0.200 0.800
44 H 0.118 0.882
45 H 0.091 0.909
46 H 0.112 0.888
47 H 0.160 0.840
48 H 0.134 0.866
49 H 0.089 0.911
50 H 0.112 0.888
51 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 7.073 9.306 18.460 21.849
hybrid contribution 0.026 -0.573 -1.729 1.821
sum 7.099 8.733 16.731 20.165
Atomic orbital electron populations
1.21574 0.95455 1.00453 1.01622 1.21877 0.96816 0.97391 1.00114
1.19770 0.90188 0.91686 0.87717 1.42452 1.55264 1.36999 1.00337
1.19216 1.25121 1.05141 0.84359 0.91725 1.25160 1.02544 0.98157
1.00022 1.69730 1.42862 1.18580 1.30180 0.85615 0.77286 0.76756
0.82508 1.21294 1.22780 1.21479 1.22192 0.98497 0.95145 1.00780
1.21243 0.97786 0.92961 0.86989 1.48101 1.08470 1.50840 1.24918
1.21237 0.86193 0.79531 0.84627 1.90684 1.17444 1.63352 1.75072
1.22035 0.89279 1.01705 0.91980 1.45115 1.29677 1.13802 1.30579
1.22661 0.95938 0.83045 0.97308 1.21046 0.99134 1.03839 1.01079
1.20646 0.93454 0.91748 0.91296 1.21032 0.94498 1.01364 1.00920
1.21903 1.02847 0.98788 1.07601 1.17542 0.84752 0.86075 0.80844
1.90893 1.69124 1.19770 1.69981 1.21877 0.78383 0.98221 1.02940
1.22023 1.02554 0.95254 0.96795 0.92005 0.93875 0.93557 0.94433
0.91751 0.79011 0.94533 0.92426 0.92439 0.92182 0.92139 0.85090
0.81379 0.78666 0.80048 0.88245 0.90853 0.88839 0.84001 0.86628
0.91057 0.88837 0.90364
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.21 9.41 71.98 0.68 -3.54 16
2 C -0.12 -4.01 4.78 30.59 0.15 -3.86 16
3 C 0.20 6.72 0.44 3.63 0.00 6.72 16
4 N -0.71 -30.22 3.00 -303.22 -0.91 -31.13 16
5 C -0.21 -10.26 8.59 84.03 0.72 -9.54 16
6 H 0.06 3.24 6.78 -2.91 -0.02 3.22 16
7 C -0.07 -3.56 5.50 84.87 0.47 -3.09 16
8 N -0.96 -54.46 13.06 21.65 0.28 -54.18 16
9 Si 0.95 44.96 29.55 68.60 2.03 46.99 16
10 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16
11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16
12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16
13 C -0.13 -4.51 4.64 30.67 0.14 -4.37 16
14 C 0.13 4.96 6.18 86.36 0.53 5.50 16
15 N -0.59 -18.34 2.98 -819.74 -2.44 -20.79 16
16 C 0.50 15.46 7.76 87.66 0.68 16.14 16
17 O -0.58 -23.35 15.84 -3.02 -0.05 -23.40 16
18 C 0.07 1.61 4.16 85.63 0.36 1.97 16
19 N -0.48 -11.46 2.07 -655.06 -1.36 -12.82 16
20 C 0.14 2.18 10.28 83.42 0.86 3.04 16
21 C -0.23 -3.07 9.71 22.08 0.21 -2.86 16
22 C 0.03 0.54 5.89 -19.82 -0.12 0.42 16
23 C -0.12 -1.09 10.03 71.23 0.71 -0.38 16
24 C -0.29 -7.10 9.65 22.40 0.22 -6.89 16
25 C 0.50 15.40 7.40 84.82 0.63 16.03 16
26 O -0.61 -23.82 16.64 -5.50 -0.09 -23.92 16
27 C 0.11 2.71 6.05 86.22 0.52 3.23 16
28 C -0.13 -3.42 4.71 30.53 0.14 -3.28 16
29 H 0.06 1.66 6.83 -2.39 -0.02 1.64 16
30 H 0.04 1.66 7.26 -2.38 -0.02 1.64 16
31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16
32 H 0.04 1.37 7.56 -2.39 -0.02 1.36 16
33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16
34 H 0.38 17.15 6.61 -92.71 -0.61 16.54 16
35 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16
36 H 0.06 2.24 7.22 -2.39 -0.02 2.22 16
37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
38 H 0.06 2.61 7.62 -2.39 -0.02 2.59 16
39 H 0.06 2.41 7.01 -2.39 -0.02 2.39 16
40 H 0.13 2.83 6.93 -2.39 -0.02 2.81 16
41 H 0.17 1.92 7.82 -2.38 -0.02 1.90 16
42 H 0.20 1.63 8.04 -2.91 -0.02 1.61 16
43 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16
44 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16
45 H 0.07 0.69 8.09 -2.39 -0.02 0.68 16
46 H 0.09 0.52 8.10 -2.38 -0.02 0.50 16
47 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16
48 H 0.12 1.90 5.94 -2.38 -0.01 1.88 16
49 H 0.07 2.06 7.02 -2.39 -0.02 2.04 16
50 H 0.09 2.28 6.64 -2.39 -0.02 2.27 16
51 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16
Total: -1.00 -77.78 400.26 4.69 -73.09
By element:
Atomic # 1 Polarization: 30.58 SS G_CDS: 0.33 Total: 30.90 kcal
Atomic # 6 Polarization: 8.35 SS G_CDS: 6.91 Total: 15.25 kcal
Atomic # 7 Polarization: -114.49 SS G_CDS: -4.43 Total: -118.91 kcal
Atomic # 8 Polarization: -47.18 SS G_CDS: -0.14 Total: -47.31 kcal
Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal
Total: -77.78 4.69 -73.09 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001717241004.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.890 kcal
(2) G-P(sol) polarization free energy of solvation -77.780 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.889 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.195 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds