Wall clock time and date at job start Wed Apr 1 2020 05:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 N 1.46494 * 109.44913 * 305.18778 * 3 2 1 5 5 C 1.36942 * 119.99864 * 296.07063 * 4 3 2 6 6 H 1.07997 * 120.00528 * 5.51748 * 5 4 3 7 7 C 1.38819 * 119.99634 * 185.51933 * 5 4 3 8 8 N 1.31611 * 120.00310 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99585 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47600 * 59.99868 * 9 7 5 11 11 H 1.48507 * 109.46878 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47170 * 299.99899 * 9 7 5 13 13 C 1.53050 * 109.45910 * 185.22302 * 3 2 1 14 14 C 1.53190 * 109.30973 * 178.61526 * 13 3 2 15 15 N 1.46923 * 108.77800 * 54.63220 * 14 13 3 16 16 C 1.34779 * 120.62655 * 126.36479 * 15 14 13 17 17 O 1.21276 * 120.00251 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99818 * 180.02562 * 16 15 14 19 19 N 1.46497 * 109.47452 * 180.02562 * 18 16 15 20 20 C 1.35770 * 119.62741 * 89.99877 * 19 18 16 21 21 C 1.35351 * 120.70383 * 180.02562 * 20 19 18 22 22 C 1.40193 * 119.94809 * 0.27591 * 21 20 19 23 23 C 1.50697 * 120.37020 * 179.70081 * 22 21 20 24 24 C 1.36410 * 119.26429 * 359.46502 * 22 21 20 25 25 C 1.34664 * 119.62447 * 270.02440 * 19 18 16 26 26 O 1.22056 * 119.98395 * 359.97311 * 25 19 18 27 27 C 1.46923 * 118.73859 * 306.64442 * 15 14 13 28 28 C 1.52759 * 109.00844 * 53.30911 * 27 15 14 29 29 H 1.08997 * 109.47039 * 294.16342 * 1 2 3 30 30 H 1.09006 * 109.46717 * 54.16075 * 1 2 3 31 31 H 1.09002 * 109.46917 * 174.15724 * 1 2 3 32 32 H 1.09003 * 109.47344 * 240.00315 * 2 1 3 33 33 H 1.09001 * 109.46992 * 119.99850 * 2 1 3 34 34 H 0.97003 * 120.00142 * 116.07401 * 4 3 2 35 35 H 0.97004 * 120.00146 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.49386 * 58.66062 * 13 3 2 37 37 H 1.08999 * 109.49594 * 298.56381 * 13 3 2 38 38 H 1.09003 * 109.58620 * 294.84425 * 14 13 3 39 39 H 1.09004 * 109.58223 * 174.42235 * 14 13 3 40 40 H 1.08999 * 109.47528 * 60.00097 * 18 16 15 41 41 H 1.09007 * 109.47520 * 300.00126 * 18 16 15 42 42 H 1.07999 * 119.64586 * 0.04204 * 20 19 18 43 43 H 1.07995 * 120.02098 * 180.02562 * 21 20 19 44 44 H 1.08999 * 109.46632 * 89.99630 * 23 22 21 45 45 H 1.08993 * 109.47650 * 210.00090 * 23 22 21 46 46 H 1.09004 * 109.46915 * 330.00302 * 23 22 21 47 47 H 1.07993 * 120.34917 * 180.24526 * 24 22 21 48 48 H 1.09007 * 109.58542 * 173.14604 * 27 15 14 49 49 H 1.08998 * 109.58544 * 293.55953 * 27 15 14 50 50 H 1.09000 * 109.55910 * 185.55125 * 28 27 15 51 51 H 1.08997 * 109.38801 * 65.51532 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4521 2.1677 -1.1289 5 6 1.7400 1.7865 -2.4123 6 1 2.3275 0.8985 -2.5929 7 6 1.2768 2.5415 -3.4811 8 7 0.5612 3.6240 -3.2611 9 14 1.6690 2.0210 -5.2317 10 1 1.1136 0.6667 -5.4818 11 1 1.0631 2.9872 -6.1829 12 1 3.1415 1.9950 -5.4223 13 6 3.5648 1.4442 -0.1314 14 6 4.0687 2.8905 -0.1658 15 7 3.5644 3.5954 1.0206 16 6 4.4105 4.2439 1.8452 17 8 5.6004 4.2498 1.6108 18 6 3.8779 4.9619 3.0584 19 7 4.9882 5.5827 3.7851 20 6 5.3657 6.8503 3.4786 21 6 6.3888 7.4448 4.1357 22 6 7.0741 6.7478 5.1407 23 6 8.2190 7.3980 5.8738 24 6 6.6900 5.4762 5.4510 25 6 5.6232 4.8893 4.7492 26 8 5.2723 3.7505 5.0134 27 6 2.1210 3.5745 1.2943 28 6 1.6384 2.1253 1.3094 29 1 -0.3633 0.4207 0.9376 30 1 -0.3633 0.6018 -0.8332 31 1 -0.3633 -1.0224 -0.1046 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.8588 2.9180 -0.9674 35 1 0.2378 4.1518 -4.0080 36 1 3.8511 0.9371 -1.0527 37 1 4.0040 0.9262 0.7212 38 1 3.7031 3.3834 -1.0666 39 1 5.1587 2.8978 -0.1595 40 1 3.3708 4.2493 3.7089 41 1 3.1736 5.7324 2.7447 42 1 4.8438 7.3902 2.7023 43 1 6.6796 8.4537 3.8832 44 1 7.8384 7.9203 6.7515 45 1 8.9313 6.6344 6.1857 46 1 8.7152 8.1100 5.2141 47 1 7.2030 4.9247 6.2249 48 1 1.9263 4.0333 2.2638 49 1 1.5934 4.1245 0.5151 50 1 0.5536 2.1030 1.4135 51 1 2.0952 1.6005 2.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717241004.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:54 Heat of formation + Delta-G solvation = -42.195313 kcal Electronic energy + Delta-G solvation = -31835.841616 eV Core-core repulsion = 27735.165110 eV Total energy + Delta-G solvation = -4100.676506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.55555 -41.18337 -39.43460 -38.08827 -36.34334 -36.20149 -34.44902 -32.66363 -31.54168 -31.36047 -30.83707 -30.26022 -28.03083 -26.26979 -25.51773 -24.64881 -24.24443 -23.12038 -22.37365 -20.95437 -19.68865 -18.93923 -18.67239 -18.52471 -18.28130 -17.04100 -16.87952 -16.70355 -16.27202 -16.12910 -15.69107 -15.40080 -15.38009 -15.17378 -15.03469 -14.75617 -14.59228 -14.40792 -14.14835 -13.97240 -13.62269 -13.45617 -13.31497 -13.10414 -13.01036 -12.91832 -12.83927 -12.81354 -12.56788 -12.45534 -12.32079 -12.20027 -12.08689 -11.84166 -11.53810 -11.41038 -11.21608 -11.07960 -10.93561 -10.79977 -10.52133 -9.66760 -8.97928 -8.82682 -7.84498 -5.07547 -0.11262 0.92544 1.43298 1.46522 1.48299 1.49942 1.53731 2.04917 2.61390 2.67155 3.35973 3.49797 3.62632 3.72652 3.80896 3.85830 3.88890 4.03855 4.08851 4.13410 4.18503 4.24200 4.34100 4.39542 4.47739 4.53946 4.60961 4.67541 4.75981 4.79010 4.82268 4.84828 4.86071 4.91403 5.05074 5.09947 5.12301 5.15095 5.24476 5.28798 5.36126 5.38304 5.49350 5.51110 5.63311 5.65369 5.67347 5.75234 6.06861 6.38128 6.39201 6.95520 7.02606 7.47631 8.22586 8.48681 9.38197 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017363 B = 0.002680 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.258584 B =10445.461297 C =11281.121692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.122 4.122 3 C 0.197 3.803 4 N -0.710 5.710 5 C -0.206 4.206 6 H 0.065 0.935 7 C -0.066 4.066 8 N -0.962 5.962 9 Si 0.946 3.054 10 H -0.286 1.286 11 H -0.301 1.301 12 H -0.288 1.288 13 C -0.126 4.126 14 C 0.133 3.867 15 N -0.591 5.591 16 C 0.496 3.504 17 O -0.585 6.585 18 C 0.075 3.925 19 N -0.483 5.483 20 C 0.136 3.864 21 C -0.229 4.229 22 C 0.033 3.967 23 C -0.122 4.122 24 C -0.290 4.290 25 C 0.502 3.498 26 O -0.610 6.610 27 C 0.108 3.892 28 C -0.128 4.128 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.376 0.624 35 H 0.246 0.754 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.131 0.869 41 H 0.169 0.831 42 H 0.196 0.804 43 H 0.182 0.818 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.142 0.858 48 H 0.116 0.884 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 10.112 18.589 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.106 3.894 4 N -0.351 5.351 5 C -0.338 4.338 6 H 0.083 0.917 7 C -0.259 4.259 8 N -0.614 5.614 9 Si 0.778 3.222 10 H -0.213 1.213 11 H -0.228 1.228 12 H -0.215 1.215 13 C -0.166 4.166 14 C 0.010 3.990 15 N -0.323 5.323 16 C 0.284 3.716 17 O -0.466 6.466 18 C -0.050 4.050 19 N -0.192 5.192 20 C 0.010 3.990 21 C -0.251 4.251 22 C 0.029 3.971 23 C -0.178 4.178 24 C -0.311 4.311 25 C 0.308 3.692 26 O -0.498 6.498 27 C -0.014 4.014 28 C -0.166 4.166 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.210 0.790 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.186 0.814 42 H 0.213 0.787 43 H 0.200 0.800 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.160 0.840 48 H 0.134 0.866 49 H 0.089 0.911 50 H 0.112 0.888 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.073 9.306 18.460 21.849 hybrid contribution 0.026 -0.573 -1.729 1.821 sum 7.099 8.733 16.731 20.165 Atomic orbital electron populations 1.21574 0.95455 1.00453 1.01622 1.21877 0.96816 0.97391 1.00114 1.19770 0.90188 0.91686 0.87717 1.42452 1.55264 1.36999 1.00337 1.19216 1.25121 1.05141 0.84359 0.91725 1.25160 1.02544 0.98157 1.00022 1.69730 1.42862 1.18580 1.30180 0.85615 0.77286 0.76756 0.82508 1.21294 1.22780 1.21479 1.22192 0.98497 0.95145 1.00780 1.21243 0.97786 0.92961 0.86989 1.48101 1.08470 1.50840 1.24918 1.21237 0.86193 0.79531 0.84627 1.90684 1.17444 1.63352 1.75072 1.22035 0.89279 1.01705 0.91980 1.45115 1.29677 1.13802 1.30579 1.22661 0.95938 0.83045 0.97308 1.21046 0.99134 1.03839 1.01079 1.20646 0.93454 0.91748 0.91296 1.21032 0.94498 1.01364 1.00920 1.21903 1.02847 0.98788 1.07601 1.17542 0.84752 0.86075 0.80844 1.90893 1.69124 1.19770 1.69981 1.21877 0.78383 0.98221 1.02940 1.22023 1.02554 0.95254 0.96795 0.92005 0.93875 0.93557 0.94433 0.91751 0.79011 0.94533 0.92426 0.92439 0.92182 0.92139 0.85090 0.81379 0.78666 0.80048 0.88245 0.90853 0.88839 0.84001 0.86628 0.91057 0.88837 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.41 71.98 0.68 -3.54 16 2 C -0.12 -4.01 4.78 30.59 0.15 -3.86 16 3 C 0.20 6.72 0.44 3.63 0.00 6.72 16 4 N -0.71 -30.22 3.00 -303.22 -0.91 -31.13 16 5 C -0.21 -10.26 8.59 84.03 0.72 -9.54 16 6 H 0.06 3.24 6.78 -2.91 -0.02 3.22 16 7 C -0.07 -3.56 5.50 84.87 0.47 -3.09 16 8 N -0.96 -54.46 13.06 21.65 0.28 -54.18 16 9 Si 0.95 44.96 29.55 68.60 2.03 46.99 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 13 C -0.13 -4.51 4.64 30.67 0.14 -4.37 16 14 C 0.13 4.96 6.18 86.36 0.53 5.50 16 15 N -0.59 -18.34 2.98 -819.74 -2.44 -20.79 16 16 C 0.50 15.46 7.76 87.66 0.68 16.14 16 17 O -0.58 -23.35 15.84 -3.02 -0.05 -23.40 16 18 C 0.07 1.61 4.16 85.63 0.36 1.97 16 19 N -0.48 -11.46 2.07 -655.06 -1.36 -12.82 16 20 C 0.14 2.18 10.28 83.42 0.86 3.04 16 21 C -0.23 -3.07 9.71 22.08 0.21 -2.86 16 22 C 0.03 0.54 5.89 -19.82 -0.12 0.42 16 23 C -0.12 -1.09 10.03 71.23 0.71 -0.38 16 24 C -0.29 -7.10 9.65 22.40 0.22 -6.89 16 25 C 0.50 15.40 7.40 84.82 0.63 16.03 16 26 O -0.61 -23.82 16.64 -5.50 -0.09 -23.92 16 27 C 0.11 2.71 6.05 86.22 0.52 3.23 16 28 C -0.13 -3.42 4.71 30.53 0.14 -3.28 16 29 H 0.06 1.66 6.83 -2.39 -0.02 1.64 16 30 H 0.04 1.66 7.26 -2.38 -0.02 1.64 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.37 7.56 -2.39 -0.02 1.36 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.38 17.15 6.61 -92.71 -0.61 16.54 16 35 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 36 H 0.06 2.24 7.22 -2.39 -0.02 2.22 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 2.61 7.62 -2.39 -0.02 2.59 16 39 H 0.06 2.41 7.01 -2.39 -0.02 2.39 16 40 H 0.13 2.83 6.93 -2.39 -0.02 2.81 16 41 H 0.17 1.92 7.82 -2.38 -0.02 1.90 16 42 H 0.20 1.63 8.04 -2.91 -0.02 1.61 16 43 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 44 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 0.69 8.09 -2.39 -0.02 0.68 16 46 H 0.09 0.52 8.10 -2.38 -0.02 0.50 16 47 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 48 H 0.12 1.90 5.94 -2.38 -0.01 1.88 16 49 H 0.07 2.06 7.02 -2.39 -0.02 2.04 16 50 H 0.09 2.28 6.64 -2.39 -0.02 2.27 16 51 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -77.78 400.26 4.69 -73.09 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.33 Total: 30.90 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.91 Total: 15.25 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -4.43 Total: -118.91 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.14 Total: -47.31 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -77.78 4.69 -73.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717241004.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.890 kcal (2) G-P(sol) polarization free energy of solvation -77.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds