Wall clock time and date at job start Wed Apr 1 2020 05:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47366 * 2 1 4 4 N 1.46497 * 109.46306 * 305.84400 * 3 2 1 5 5 C 1.36940 * 119.99867 * 302.74116 * 4 3 2 6 6 H 1.07998 * 119.99576 * 354.32730 * 5 4 3 7 7 C 1.38812 * 120.00193 * 174.33915 * 5 4 3 8 8 N 1.31613 * 120.00164 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99801 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47164 * 90.00087 * 9 7 5 11 11 H 1.48499 * 109.47144 * 210.00389 * 9 7 5 12 12 H 1.48504 * 109.47151 * 329.99892 * 9 7 5 13 13 C 1.53043 * 109.46315 * 185.86603 * 3 2 1 14 14 C 1.53195 * 109.31496 * 178.60056 * 13 3 2 15 15 N 1.46929 * 108.76338 * 54.65886 * 14 13 3 16 16 C 1.34773 * 120.62942 * 126.35957 * 15 14 13 17 17 O 1.21278 * 119.99894 * 185.05171 * 16 15 14 18 18 C 1.50696 * 120.00076 * 5.05182 * 16 15 14 19 19 H 1.09005 * 109.47099 * 48.42160 * 18 16 15 20 20 C 1.52999 * 109.47533 * 288.42444 * 18 16 15 21 21 O 1.42893 * 109.47303 * 168.42177 * 18 16 15 22 22 C 1.35920 * 117.00326 * 204.32992 * 21 18 16 23 23 C 1.39140 * 120.47198 * 357.80547 * 22 21 18 24 24 C 1.38527 * 118.37409 * 180.02562 * 23 22 21 25 25 C 1.38258 * 119.22163 * 0.02562 * 24 23 22 26 26 N 1.31841 * 120.88717 * 359.97438 * 25 24 23 27 27 C 1.31842 * 121.78321 * 359.70495 * 26 25 24 28 28 C 1.46926 * 118.73799 * 306.38461 * 15 14 13 29 29 C 1.53042 * 109.46155 * 65.81622 * 3 2 1 30 30 H 1.08993 * 109.47275 * 182.69271 * 1 2 3 31 31 H 1.08996 * 109.46766 * 302.69014 * 1 2 3 32 32 H 1.08996 * 109.47071 * 62.69075 * 1 2 3 33 33 H 1.09004 * 109.47183 * 239.99648 * 2 1 3 34 34 H 1.08999 * 109.46920 * 119.99991 * 2 1 3 35 35 H 0.97001 * 120.00326 * 122.73753 * 4 3 2 36 36 H 0.96998 * 119.99978 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.50074 * 298.57357 * 13 3 2 38 38 H 1.08999 * 109.49347 * 58.66625 * 13 3 2 39 39 H 1.08993 * 109.59672 * 294.87284 * 14 13 3 40 40 H 1.08998 * 109.58427 * 174.43638 * 14 13 3 41 41 H 1.08997 * 109.47844 * 182.21626 * 20 18 16 42 42 H 1.09001 * 109.46764 * 302.21698 * 20 18 16 43 43 H 1.09005 * 109.47152 * 62.21581 * 20 18 16 44 44 H 1.07997 * 120.80900 * 359.97438 * 23 22 21 45 45 H 1.07997 * 120.38996 * 180.02562 * 24 23 22 46 46 H 1.08006 * 119.55690 * 179.97438 * 25 24 23 47 47 H 1.07992 * 119.66552 * 180.28585 * 27 26 25 48 48 H 1.09001 * 109.58848 * 293.81848 * 28 15 14 49 49 H 1.08996 * 109.58533 * 173.39498 * 28 15 14 50 50 H 1.08999 * 109.49490 * 301.33919 * 29 3 2 51 51 H 1.09006 * 109.49940 * 61.43101 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4402 2.1723 -1.1197 5 6 1.6026 1.7153 -2.4003 6 1 2.2474 0.8710 -2.5947 7 6 0.9388 2.3375 -3.4487 8 7 1.0952 1.8987 -4.6796 9 14 -0.1768 3.7977 -3.1124 10 1 0.6124 5.0528 -3.1949 11 1 -1.2664 3.8307 -4.1208 12 1 -0.7632 3.6700 -1.7540 13 6 3.5634 1.4447 -0.1475 14 6 4.0670 2.8910 -0.1822 15 7 3.5756 3.5914 1.0124 16 6 4.4306 4.2368 1.8302 17 8 4.0265 4.7328 2.8605 18 6 5.8887 4.3421 1.4645 19 1 5.9809 4.6758 0.4309 20 6 6.5537 2.9729 1.6195 21 8 6.5296 5.2833 2.3278 22 6 7.6569 5.8815 1.8602 23 6 8.1708 5.5412 0.6127 24 6 9.3223 6.1776 0.1792 25 6 9.9189 7.1222 0.9937 26 7 9.4061 7.4217 2.1708 27 6 8.3086 6.8437 2.6175 28 6 2.1346 3.5742 1.2986 29 6 1.6527 2.1202 1.3163 30 1 -0.3633 -1.0264 0.0483 31 1 -0.3633 0.5550 0.8649 32 1 -0.3633 0.4715 -0.9131 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.9280 2.9791 -0.9539 36 1 0.6310 2.3332 -5.4121 37 1 4.0116 0.9233 0.6983 38 1 3.8399 0.9411 -1.0738 39 1 3.6916 3.3874 -1.0770 40 1 5.1569 2.8984 -0.1876 41 1 7.6165 3.0573 1.3930 42 1 6.4272 2.6215 2.6435 43 1 6.0910 2.2643 0.9324 44 1 7.6843 4.7984 -0.0020 45 1 9.7490 5.9388 -0.7837 46 1 10.8171 7.6214 0.6612 47 1 7.9157 7.1185 3.5852 48 1 1.6017 4.1264 0.5246 49 1 1.9497 4.0324 2.2702 50 1 0.5691 2.0975 1.4321 51 1 2.1191 1.5925 2.1483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724887478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:48 Heat of formation + Delta-G solvation = -10.126796 kcal Electronic energy + Delta-G solvation = -32015.867606 eV Core-core repulsion = 27916.581695 eV Total energy + Delta-G solvation = -4099.285911 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19718 -40.24916 -38.76289 -37.75882 -35.12186 -32.98282 -32.53684 -32.40955 -30.85663 -30.51830 -30.06975 -29.64875 -25.82285 -24.72666 -24.01798 -23.67535 -23.24928 -22.41888 -21.56517 -19.76441 -18.78347 -18.15223 -17.84186 -17.21618 -17.03417 -16.50267 -15.98890 -15.73730 -15.16036 -14.75775 -14.56737 -14.48355 -14.21807 -14.16563 -14.03552 -13.81619 -13.42694 -13.36569 -13.08363 -12.94663 -12.71224 -12.54401 -12.47309 -12.08638 -11.93707 -11.73280 -11.55628 -11.45197 -11.32963 -11.04081 -10.95417 -10.72898 -10.49880 -10.29744 -10.17225 -10.09200 -9.87945 -9.83466 -9.64042 -9.52280 -8.99535 -8.70046 -8.48950 -7.35025 -5.86267 -3.22175 0.84916 0.94984 2.32430 2.52348 3.28661 3.32226 3.32424 3.39409 3.51805 4.15411 4.25576 4.33074 4.46798 4.50063 4.54008 4.61331 4.80650 4.91268 4.94233 5.04326 5.10171 5.22054 5.27153 5.31457 5.34935 5.44773 5.50211 5.52389 5.68259 5.74630 5.76464 5.78585 5.82806 5.87142 5.96924 6.01862 6.03767 6.10957 6.21228 6.29471 6.40614 6.48807 6.56290 6.62490 6.77397 6.91497 6.92812 7.07298 7.42994 7.68033 7.90293 8.11045 8.33181 9.11076 9.83899 10.03954 11.31770 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.002946 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.665350 B = 9503.383659 C =10316.390844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.209 3.791 4 N -0.739 5.739 5 C -0.236 4.236 6 H 0.092 0.908 7 C 0.009 3.991 8 N -0.932 5.932 9 Si 0.874 3.126 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.276 1.276 13 C -0.135 4.135 14 C 0.102 3.898 15 N -0.596 5.596 16 C 0.520 3.480 17 O -0.529 6.529 18 C 0.066 3.934 19 H 0.098 0.902 20 C -0.183 4.183 21 O -0.278 6.278 22 C 0.085 3.915 23 C -0.170 4.170 24 C -0.128 4.128 25 C 0.053 3.947 26 N -0.448 5.448 27 C 0.075 3.925 28 C 0.117 3.883 29 C -0.135 4.135 30 H 0.035 0.965 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.158 0.842 47 H 0.164 0.836 48 H 0.070 0.930 49 H 0.087 0.913 50 H 0.078 0.922 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.958 2.717 11.172 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.118 3.882 4 N -0.382 5.382 5 C -0.365 4.365 6 H 0.109 0.891 7 C -0.187 4.187 8 N -0.580 5.580 9 Si 0.705 3.295 10 H -0.213 1.213 11 H -0.219 1.219 12 H -0.202 1.202 13 C -0.176 4.176 14 C -0.020 4.020 15 N -0.330 5.330 16 C 0.306 3.694 17 O -0.405 6.405 18 C 0.006 3.994 19 H 0.115 0.885 20 C -0.240 4.240 21 O -0.189 6.189 22 C 0.037 3.963 23 C -0.196 4.196 24 C -0.148 4.148 25 C -0.104 4.104 26 N -0.157 5.157 27 C -0.084 4.084 28 C -0.005 4.005 29 C -0.173 4.173 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.160 0.840 45 H 0.157 0.843 46 H 0.175 0.825 47 H 0.182 0.818 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.097 0.903 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.079 3.492 12.210 18.230 hybrid contribution -1.255 0.222 -0.962 1.597 sum 11.824 3.713 11.248 16.736 Atomic orbital electron populations 1.21653 0.96076 0.99679 1.02406 1.21821 0.96452 0.97238 1.00383 1.19486 0.90714 0.91372 0.86678 1.42851 1.63509 1.29085 1.02796 1.18915 1.22948 1.13140 0.81526 0.89066 1.24633 0.99751 0.99015 0.95322 1.69678 1.46942 1.42877 0.98475 0.86723 0.81507 0.83951 0.77365 1.21315 1.21893 1.20184 1.22311 0.98532 0.94768 1.01942 1.22037 0.98142 0.94179 0.87641 1.48016 1.07435 1.51915 1.25635 1.19860 0.86563 0.79079 0.83919 1.90706 1.78195 1.47333 1.24234 1.22271 0.91544 0.90504 0.95079 0.88471 1.22514 1.01653 0.94891 1.04955 1.86236 1.36230 1.54379 1.42019 1.20282 0.88013 0.94270 0.93764 1.21822 0.98557 1.03157 0.96089 1.22026 0.95289 0.96387 1.01095 1.22681 1.00402 0.96895 0.90405 1.67740 1.09426 1.23792 1.14694 1.22240 0.92086 0.93447 1.00646 1.21604 0.79038 0.97716 1.02157 1.22191 1.01686 0.95083 0.98344 0.94574 0.94162 0.90744 0.91612 0.93918 0.80652 0.93088 0.92879 0.89887 0.89083 0.90710 0.90791 0.90470 0.88907 0.83992 0.84310 0.82494 0.81837 0.91134 0.89435 0.90313 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.46 37.16 0.35 -1.93 16 2 C -0.12 -1.89 4.66 -26.73 -0.12 -2.02 16 3 C 0.21 3.30 0.44 -131.78 -0.06 3.24 16 4 N -0.74 -14.47 3.09 -47.20 -0.15 -14.61 16 5 C -0.24 -5.64 8.78 -15.06 -0.13 -5.77 16 6 H 0.09 2.37 7.01 -52.49 -0.37 2.00 16 7 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 8 N -0.93 -27.11 13.97 55.49 0.78 -26.34 16 9 Si 0.87 20.52 27.68 -169.99 -4.71 15.81 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.10 6.61 56.52 0.37 -5.72 16 13 C -0.14 -1.91 4.75 -26.61 -0.13 -2.04 16 14 C 0.10 1.36 5.39 -3.71 -0.02 1.34 16 15 N -0.60 -8.39 2.97 -172.77 -0.51 -8.90 16 16 C 0.52 7.67 7.05 -10.99 -0.08 7.59 16 17 O -0.53 -9.65 15.96 -14.08 -0.22 -9.87 16 18 C 0.07 0.77 1.80 -27.89 -0.05 0.72 16 19 H 0.10 0.99 5.64 -51.93 -0.29 0.69 16 20 C -0.18 -1.69 8.81 37.16 0.33 -1.36 16 21 O -0.28 -3.65 9.37 -39.13 -0.37 -4.02 16 22 C 0.08 0.97 6.60 -39.07 -0.26 0.72 16 23 C -0.17 -1.60 8.35 -39.14 -0.33 -1.93 16 24 C -0.13 -1.05 10.11 -39.47 -0.40 -1.45 16 25 C 0.05 0.48 11.18 -17.54 -0.20 0.28 16 26 N -0.45 -5.07 10.35 -13.13 -0.14 -5.21 16 27 C 0.07 0.85 11.14 -17.37 -0.19 0.66 16 28 C 0.12 1.71 6.17 -3.71 -0.02 1.68 16 29 C -0.13 -1.89 4.77 -26.61 -0.13 -2.02 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.59 6.44 -51.93 -0.33 0.25 16 32 H 0.07 1.44 7.19 -51.93 -0.37 1.07 16 33 H 0.07 1.16 7.46 -51.93 -0.39 0.78 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.36 7.25 4.32 -40.82 -0.18 7.07 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.29 7.36 -51.93 -0.38 0.91 16 39 H 0.09 1.45 7.74 -51.93 -0.40 1.05 16 40 H 0.07 0.78 4.07 -51.93 -0.21 0.57 16 41 H 0.07 0.58 7.12 -51.93 -0.37 0.21 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.09 0.78 5.55 -51.93 -0.29 0.49 16 44 H 0.14 1.11 5.71 -52.49 -0.30 0.81 16 45 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 46 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 47 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 48 H 0.07 1.09 6.88 -51.93 -0.36 0.73 16 49 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 50 H 0.08 1.09 6.48 -51.93 -0.34 0.76 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 388.32 15.07 5.85 5.85 Total: -1.00 -31.06 388.32 -8.48 -39.54 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.49 Total: 9.89 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -1.53 Total: -2.15 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.02 Total: -55.05 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.59 Total: -13.89 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.71 Total: 15.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.06 -8.48 -39.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724887478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.414 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds