Wall clock time and date at job start Wed Apr 1 2020 05:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47366 * 2 1 4 4 N 1.46497 * 109.46306 * 305.84400 * 3 2 1 5 5 C 1.36940 * 119.99867 * 302.74116 * 4 3 2 6 6 H 1.07998 * 119.99576 * 354.32730 * 5 4 3 7 7 C 1.38812 * 120.00193 * 174.33915 * 5 4 3 8 8 N 1.31613 * 120.00164 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99801 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47164 * 90.00087 * 9 7 5 11 11 H 1.48499 * 109.47144 * 210.00389 * 9 7 5 12 12 H 1.48504 * 109.47151 * 329.99892 * 9 7 5 13 13 C 1.53043 * 109.46315 * 185.86603 * 3 2 1 14 14 C 1.53195 * 109.31496 * 178.60056 * 13 3 2 15 15 N 1.46929 * 108.76338 * 54.65886 * 14 13 3 16 16 C 1.34773 * 120.62942 * 126.35957 * 15 14 13 17 17 O 1.21278 * 119.99894 * 185.05171 * 16 15 14 18 18 C 1.50696 * 120.00076 * 5.05182 * 16 15 14 19 19 H 1.09005 * 109.47099 * 48.42160 * 18 16 15 20 20 C 1.52999 * 109.47533 * 288.42444 * 18 16 15 21 21 O 1.42893 * 109.47303 * 168.42177 * 18 16 15 22 22 C 1.35920 * 117.00326 * 204.32992 * 21 18 16 23 23 C 1.39140 * 120.47198 * 357.80547 * 22 21 18 24 24 C 1.38527 * 118.37409 * 180.02562 * 23 22 21 25 25 C 1.38258 * 119.22163 * 0.02562 * 24 23 22 26 26 N 1.31841 * 120.88717 * 359.97438 * 25 24 23 27 27 C 1.31842 * 121.78321 * 359.70495 * 26 25 24 28 28 C 1.46926 * 118.73799 * 306.38461 * 15 14 13 29 29 C 1.53042 * 109.46155 * 65.81622 * 3 2 1 30 30 H 1.08993 * 109.47275 * 182.69271 * 1 2 3 31 31 H 1.08996 * 109.46766 * 302.69014 * 1 2 3 32 32 H 1.08996 * 109.47071 * 62.69075 * 1 2 3 33 33 H 1.09004 * 109.47183 * 239.99648 * 2 1 3 34 34 H 1.08999 * 109.46920 * 119.99991 * 2 1 3 35 35 H 0.97001 * 120.00326 * 122.73753 * 4 3 2 36 36 H 0.96998 * 119.99978 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.50074 * 298.57357 * 13 3 2 38 38 H 1.08999 * 109.49347 * 58.66625 * 13 3 2 39 39 H 1.08993 * 109.59672 * 294.87284 * 14 13 3 40 40 H 1.08998 * 109.58427 * 174.43638 * 14 13 3 41 41 H 1.08997 * 109.47844 * 182.21626 * 20 18 16 42 42 H 1.09001 * 109.46764 * 302.21698 * 20 18 16 43 43 H 1.09005 * 109.47152 * 62.21581 * 20 18 16 44 44 H 1.07997 * 120.80900 * 359.97438 * 23 22 21 45 45 H 1.07997 * 120.38996 * 180.02562 * 24 23 22 46 46 H 1.08006 * 119.55690 * 179.97438 * 25 24 23 47 47 H 1.07992 * 119.66552 * 180.28585 * 27 26 25 48 48 H 1.09001 * 109.58848 * 293.81848 * 28 15 14 49 49 H 1.08996 * 109.58533 * 173.39498 * 28 15 14 50 50 H 1.08999 * 109.49490 * 301.33919 * 29 3 2 51 51 H 1.09006 * 109.49940 * 61.43101 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 1.4402 2.1723 -1.1197 5 6 1.6026 1.7153 -2.4003 6 1 2.2474 0.8710 -2.5947 7 6 0.9388 2.3375 -3.4487 8 7 1.0952 1.8987 -4.6796 9 14 -0.1768 3.7977 -3.1124 10 1 0.6124 5.0528 -3.1949 11 1 -1.2664 3.8307 -4.1208 12 1 -0.7632 3.6700 -1.7540 13 6 3.5634 1.4447 -0.1475 14 6 4.0670 2.8910 -0.1822 15 7 3.5756 3.5914 1.0124 16 6 4.4306 4.2368 1.8302 17 8 4.0265 4.7328 2.8605 18 6 5.8887 4.3421 1.4645 19 1 5.9809 4.6758 0.4309 20 6 6.5537 2.9729 1.6195 21 8 6.5296 5.2833 2.3278 22 6 7.6569 5.8815 1.8602 23 6 8.1708 5.5412 0.6127 24 6 9.3223 6.1776 0.1792 25 6 9.9189 7.1222 0.9937 26 7 9.4061 7.4217 2.1708 27 6 8.3086 6.8437 2.6175 28 6 2.1346 3.5742 1.2986 29 6 1.6527 2.1202 1.3163 30 1 -0.3633 -1.0264 0.0483 31 1 -0.3633 0.5550 0.8649 32 1 -0.3633 0.4715 -0.9131 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.9280 2.9791 -0.9539 36 1 0.6310 2.3332 -5.4121 37 1 4.0116 0.9233 0.6983 38 1 3.8399 0.9411 -1.0738 39 1 3.6916 3.3874 -1.0770 40 1 5.1569 2.8984 -0.1876 41 1 7.6165 3.0573 1.3930 42 1 6.4272 2.6215 2.6435 43 1 6.0910 2.2643 0.9324 44 1 7.6843 4.7984 -0.0020 45 1 9.7490 5.9388 -0.7837 46 1 10.8171 7.6214 0.6612 47 1 7.9157 7.1185 3.5852 48 1 1.6017 4.1264 0.5246 49 1 1.9497 4.0324 2.2702 50 1 0.5691 2.0975 1.4321 51 1 2.1191 1.5925 2.1483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724887478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:47 Heat of formation + Delta-G solvation = -28.508041 kcal Electronic energy + Delta-G solvation = -32016.664676 eV Core-core repulsion = 27916.581695 eV Total energy + Delta-G solvation = -4100.082981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11355 -41.26010 -39.84190 -38.84546 -36.43674 -34.52046 -33.66974 -33.18905 -32.16063 -31.76393 -31.23594 -30.78541 -26.97639 -25.67761 -25.30083 -24.84075 -24.31648 -23.49262 -22.70628 -20.91103 -19.71970 -19.59789 -19.43681 -18.24360 -17.83179 -17.46190 -16.95471 -16.71461 -16.34494 -16.29676 -15.88512 -15.50297 -15.36232 -15.18264 -15.04354 -14.89806 -14.60702 -14.56378 -14.27380 -14.22300 -13.97432 -13.58329 -13.42119 -13.22970 -12.97104 -12.93336 -12.90184 -12.65435 -12.55816 -12.34947 -12.31086 -12.10066 -11.95045 -11.73954 -11.62686 -11.51010 -11.01027 -10.92775 -10.78733 -10.67369 -10.59499 -9.73292 -9.48095 -9.13972 -7.90438 -5.20142 0.13360 0.21702 1.32652 1.39666 1.41855 1.44718 1.48374 2.33914 2.55353 2.78619 3.18999 3.42153 3.51037 3.57209 3.59382 3.73724 3.76683 3.86156 3.88335 3.92942 4.08963 4.13182 4.20299 4.28524 4.34621 4.48566 4.56168 4.57719 4.61978 4.64716 4.74002 4.75876 4.78829 4.83295 5.00372 5.02301 5.06799 5.08936 5.11432 5.19163 5.23710 5.32988 5.35490 5.43099 5.54668 5.64090 5.69504 5.95997 6.10548 6.31316 6.34860 6.94821 6.97803 7.21345 7.98518 8.15891 9.31307 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.002946 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.665350 B = 9503.383659 C =10316.390844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 C 0.199 3.801 4 N -0.738 5.738 5 C -0.185 4.185 6 H 0.069 0.931 7 C -0.059 4.059 8 N -0.986 5.986 9 Si 0.927 3.073 10 H -0.288 1.288 11 H -0.310 1.310 12 H -0.254 1.254 13 C -0.131 4.131 14 C 0.106 3.894 15 N -0.592 5.592 16 C 0.517 3.483 17 O -0.569 6.569 18 C 0.067 3.933 19 H 0.115 0.885 20 C -0.176 4.176 21 O -0.301 6.301 22 C 0.067 3.933 23 C -0.170 4.170 24 C -0.121 4.121 25 C 0.049 3.951 26 N -0.471 5.471 27 C 0.055 3.945 28 C 0.115 3.885 29 C -0.124 4.124 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.359 0.641 36 H 0.250 0.750 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.161 0.839 45 H 0.173 0.827 46 H 0.185 0.815 47 H 0.162 0.838 48 H 0.059 0.941 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.603 2.327 12.380 19.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.110 3.890 4 N -0.381 5.381 5 C -0.317 4.317 6 H 0.087 0.913 7 C -0.250 4.250 8 N -0.638 5.638 9 Si 0.758 3.242 10 H -0.215 1.215 11 H -0.238 1.238 12 H -0.179 1.179 13 C -0.171 4.171 14 C -0.016 4.016 15 N -0.325 5.325 16 C 0.305 3.695 17 O -0.448 6.448 18 C 0.008 3.992 19 H 0.132 0.868 20 C -0.233 4.233 21 O -0.213 6.213 22 C 0.020 3.980 23 C -0.196 4.196 24 C -0.141 4.141 25 C -0.108 4.108 26 N -0.181 5.181 27 C -0.103 4.103 28 C -0.008 4.008 29 C -0.162 4.162 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.193 0.807 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.123 0.877 44 H 0.179 0.821 45 H 0.190 0.810 46 H 0.202 0.798 47 H 0.179 0.821 48 H 0.078 0.922 49 H 0.104 0.896 50 H 0.101 0.899 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.734 3.092 13.491 20.215 hybrid contribution -1.659 0.303 -1.265 2.108 sum 13.076 3.395 12.226 18.220 Atomic orbital electron populations 1.21606 0.96330 1.00406 1.01213 1.21794 0.96186 0.96938 1.00698 1.19804 0.91707 0.91252 0.86223 1.42881 1.63515 1.29344 1.02344 1.18828 1.19426 1.10427 0.82980 0.91276 1.25183 1.02443 1.02072 0.95323 1.69830 1.49437 1.45089 0.99444 0.85819 0.79540 0.81254 0.77588 1.21508 1.23831 1.17915 1.22238 0.97032 0.95423 1.02401 1.22029 1.00164 0.93152 0.86252 1.48031 1.07219 1.51701 1.25557 1.20432 0.87859 0.78021 0.83196 1.90686 1.79160 1.48925 1.26013 1.22343 0.89522 0.91801 0.95561 0.86794 1.22498 1.02640 0.93337 1.04816 1.86195 1.37122 1.55089 1.42934 1.20369 0.87965 0.94841 0.94876 1.22107 0.98864 1.03362 0.95311 1.22408 0.94428 0.95161 1.02056 1.23257 1.01018 0.96879 0.89687 1.67750 1.09692 1.24523 1.16104 1.22292 0.92703 0.94184 1.01090 1.21568 0.79529 0.98012 1.01668 1.22111 1.02170 0.94483 0.97478 0.93335 0.92380 0.94478 0.94001 0.90842 0.80718 0.94044 0.90045 0.91373 0.91700 0.87288 0.88954 0.91277 0.87724 0.82148 0.80974 0.79806 0.82123 0.92244 0.89641 0.89859 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 9.46 71.98 0.68 -3.53 16 2 C -0.12 -3.43 4.66 30.59 0.14 -3.29 16 3 C 0.20 5.87 0.44 3.63 0.00 5.87 16 4 N -0.74 -28.11 3.09 -303.23 -0.94 -29.05 16 5 C -0.19 -8.91 8.78 84.03 0.74 -8.17 16 6 H 0.07 3.64 7.01 -2.91 -0.02 3.62 16 7 C -0.06 -3.19 5.50 84.86 0.47 -2.72 16 8 N -0.99 -59.24 13.97 21.65 0.30 -58.93 16 9 Si 0.93 43.00 27.68 68.60 1.90 44.89 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 11 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 12 H -0.25 -10.68 6.61 99.48 0.66 -10.02 16 13 C -0.13 -3.35 4.75 30.67 0.15 -3.21 16 14 C 0.11 2.56 5.39 86.36 0.47 3.02 16 15 N -0.59 -15.44 2.97 -818.92 -2.43 -17.88 16 16 C 0.52 14.44 7.05 87.66 0.62 15.06 16 17 O -0.57 -20.44 15.96 15.76 0.25 -20.19 16 18 C 0.07 1.42 1.80 29.85 0.05 1.48 16 19 H 0.11 1.98 5.64 -2.38 -0.01 1.96 16 20 C -0.18 -2.69 8.81 71.98 0.63 -2.05 16 21 O -0.30 -7.65 9.37 -73.87 -0.69 -8.34 16 22 C 0.07 1.46 6.60 22.60 0.15 1.61 16 23 C -0.17 -2.74 8.35 22.56 0.19 -2.55 16 24 C -0.12 -1.58 10.11 22.34 0.23 -1.35 16 25 C 0.05 0.76 11.18 84.70 0.95 1.71 16 26 N -0.47 -10.23 10.35 -195.44 -2.02 -12.26 16 27 C 0.05 1.24 11.14 84.80 0.94 2.19 16 28 C 0.11 3.14 6.17 86.36 0.53 3.68 16 29 C -0.12 -3.13 4.77 30.67 0.15 -2.98 16 30 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.54 6.44 -2.39 -0.02 1.53 16 32 H 0.04 1.40 7.19 -2.39 -0.02 1.38 16 33 H 0.04 1.43 7.46 -2.38 -0.02 1.41 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.36 13.98 4.32 -92.71 -0.40 13.58 16 36 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.99 7.36 -2.39 -0.02 1.98 16 39 H 0.06 1.96 7.74 -2.39 -0.02 1.94 16 40 H 0.11 1.89 4.07 -2.39 -0.01 1.88 16 41 H 0.09 1.10 7.12 -2.39 -0.02 1.08 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 43 H 0.10 1.32 5.55 -2.38 -0.01 1.30 16 44 H 0.16 1.88 5.71 -2.91 -0.02 1.86 16 45 H 0.17 1.06 8.06 -2.91 -0.02 1.03 16 46 H 0.19 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 48 H 0.06 1.76 6.88 -2.39 -0.02 1.75 16 49 H 0.09 2.42 7.00 -2.39 -0.02 2.40 16 50 H 0.08 2.05 6.48 -2.39 -0.02 2.04 16 51 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -70.48 388.32 3.95 -66.53 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.51 Total: 30.47 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 7.08 Total: 4.75 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -5.09 Total: -118.11 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.44 Total: -28.53 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.90 Total: 44.89 kcal Total: -70.48 3.95 -66.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724887478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.019 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds