Wall clock time and date at job start Wed Apr 1 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.46502 * 2 1 4 4 N 1.46898 * 109.46048 * 305.42903 * 3 2 1 5 5 C 1.46901 * 111.00107 * 298.80951 * 4 3 2 6 6 C 1.50696 * 109.47294 * 174.77292 * 5 4 3 7 7 O 1.21299 * 119.99806 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00090 * 179.97438 * 6 5 4 9 9 C 1.37103 * 119.99902 * 179.97438 * 8 6 5 10 10 H 1.07995 * 119.99809 * 359.97438 * 9 8 6 11 11 C 1.38951 * 119.99806 * 180.02562 * 9 8 6 12 12 N 1.31409 * 119.99941 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99716 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46967 * 89.99890 * 13 11 9 15 15 H 1.48498 * 109.46697 * 209.99799 * 13 11 9 16 16 H 1.48498 * 109.47122 * 329.99822 * 13 11 9 17 17 C 1.53045 * 109.45529 * 185.47197 * 3 2 1 18 18 C 1.53190 * 109.31097 * 178.61748 * 17 3 2 19 19 N 1.46923 * 108.78047 * 54.62985 * 18 17 3 20 20 C 1.34781 * 120.62966 * 126.41014 * 19 18 17 21 21 O 1.21617 * 119.99796 * 179.97438 * 20 19 18 22 22 C 1.43196 * 119.99927 * 359.97438 * 20 19 18 23 23 C 7.03467 * 140.68307 * 17.29429 * 2 1 3 24 24 C 8.16441 * 147.49653 * 13.64230 * 2 1 3 25 25 C 1.53005 * 117.49691 * 259.71638 * 24 23 22 26 26 C 1.53004 * 117.49492 * 191.06380 * 24 23 22 27 27 C 1.46930 * 118.74079 * 306.39891 * 19 18 17 28 28 C 1.53036 * 109.46080 * 65.40536 * 3 2 1 29 29 H 1.08999 * 109.47251 * 54.60501 * 1 2 3 30 30 H 1.09005 * 109.46930 * 174.60125 * 1 2 3 31 31 H 1.08997 * 109.47403 * 294.60153 * 1 2 3 32 32 H 1.08993 * 109.47064 * 119.99657 * 2 1 3 33 33 H 1.08999 * 109.47083 * 240.00724 * 2 1 3 34 34 H 1.00902 * 110.99907 * 174.85295 * 4 3 2 35 35 H 1.09002 * 109.46987 * 294.76806 * 5 4 3 36 36 H 1.08999 * 109.47106 * 54.76579 * 5 4 3 37 37 H 0.96997 * 119.99988 * 359.97438 * 8 6 5 38 38 H 0.97003 * 119.99634 * 180.02562 * 12 11 9 39 39 H 1.09005 * 109.49744 * 298.56756 * 17 3 2 40 40 H 1.08998 * 109.50211 * 58.66309 * 17 3 2 41 41 H 1.09008 * 109.58443 * 294.84333 * 18 17 3 42 42 H 1.09003 * 109.58520 * 174.42516 * 18 17 3 43 43 H 1.08996 * 115.55271 * 45.39268 * 24 23 22 44 44 H 1.08998 * 117.49611 * 0.02562 * 25 24 23 45 45 H 1.09002 * 117.49601 * 145.02055 * 25 24 23 46 46 H 1.09007 * 117.49636 * 214.97764 * 26 24 23 47 47 H 1.09002 * 117.49909 * 359.96836 * 26 24 23 48 48 H 1.09001 * 109.57943 * 293.81834 * 27 19 18 49 49 H 1.08996 * 109.58952 * 173.39138 * 27 19 18 50 50 H 1.09002 * 109.50051 * 301.33239 * 28 3 2 51 51 H 1.09000 * 109.49945 * 61.40152 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.4460 2.1716 -1.1286 5 6 1.8283 1.5616 -2.4091 6 6 1.1008 2.2540 -3.5325 7 8 0.3383 3.1657 -3.2903 8 7 1.2973 1.8603 -4.8064 9 6 0.6349 2.4899 -5.8284 10 1 -0.0446 3.3011 -5.6126 11 6 0.8371 2.0836 -7.1417 12 7 1.6628 1.0956 -7.4041 13 14 -0.0648 2.9420 -8.5343 14 1 0.7507 4.0826 -9.0234 15 1 -0.2893 1.9819 -9.6446 16 1 -1.3728 3.4439 -8.0418 17 6 3.5642 1.4446 -0.1376 18 6 4.0679 2.8909 -0.1720 19 7 3.5685 3.5941 1.0174 20 6 4.4178 4.2423 1.8391 21 8 3.9918 4.8210 2.8202 22 6 5.8216 4.2495 1.5567 23 6 6.9725 4.2557 1.3250 24 6 8.4156 4.2634 1.0348 25 6 9.3702 4.5107 2.2046 26 6 9.1524 5.5993 1.1508 27 6 2.1255 3.5775 1.2941 28 6 1.6436 2.1235 1.3120 29 1 -0.3634 0.5952 -0.8377 30 1 -0.3633 -1.0232 -0.0967 31 1 -0.3634 0.4278 0.9343 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.7005 3.1477 -1.1027 35 1 2.9037 1.6654 -2.5543 36 1 1.5631 0.5044 -2.4015 37 1 1.9073 1.1315 -5.0001 38 1 1.8042 0.8122 -8.3210 39 1 4.0069 0.9252 0.7124 40 1 3.8468 0.9388 -1.0609 41 1 3.6986 3.3851 -1.0706 42 1 5.1579 2.8983 -0.1702 43 1 8.7421 3.5745 0.2557 44 1 8.9296 4.6674 3.1892 45 1 10.3249 3.9848 2.1950 46 1 9.9639 5.7891 0.4482 47 1 8.5684 6.4726 1.4416 48 1 1.5979 4.1277 0.5150 49 1 1.9339 4.0380 2.2632 50 1 0.5592 2.1010 1.4206 51 1 2.1040 1.5975 2.1484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733802678.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:46 Heat of formation + Delta-G solvation = 11.369664 kcal Electronic energy + Delta-G solvation = -30743.323348 eV Core-core repulsion = 26644.969593 eV Total energy + Delta-G solvation = -4098.353754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81242 -39.05117 -38.01012 -37.80876 -35.37459 -33.95246 -33.19780 -32.25245 -31.21401 -31.06876 -30.52568 -26.76647 -25.89586 -24.85879 -24.14311 -23.31393 -22.91460 -22.42570 -21.04002 -19.37219 -18.89023 -18.08412 -17.89406 -17.21100 -16.54188 -16.19802 -15.81344 -15.45365 -15.28542 -14.86418 -14.72022 -14.43301 -14.23884 -14.07116 -13.74426 -13.66723 -13.38276 -13.01518 -12.82541 -12.61056 -12.41188 -12.18595 -12.16365 -12.02646 -11.86539 -11.77634 -11.70246 -11.53605 -11.35389 -11.13651 -11.08614 -10.90283 -10.71044 -10.56003 -10.40403 -10.32576 -10.22366 -10.16348 -10.10650 -9.51148 -8.87590 -8.47065 -8.02317 -7.95790 -6.42608 -3.83156 1.23877 1.96767 2.68949 3.01163 3.16953 3.25739 3.31749 3.63244 3.65620 3.90720 4.05297 4.27464 4.28683 4.42632 4.46239 4.53490 4.59666 4.74466 4.86063 4.98947 5.05815 5.12550 5.14216 5.21878 5.25888 5.28935 5.33711 5.44894 5.46457 5.53021 5.57411 5.58213 5.59385 5.68582 5.72777 5.83636 5.90736 5.93111 5.96745 6.11571 6.13823 6.23200 6.29432 6.37175 6.67040 6.92309 7.05986 7.23269 7.54537 7.62299 7.83716 8.06025 8.60984 9.17721 9.54153 10.05890 10.75190 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009537 B = 0.002570 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.221322 B =10892.249517 C =12727.299049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.116 3.884 4 N -0.651 5.651 5 C 0.045 3.955 6 C 0.441 3.559 7 O -0.581 6.581 8 N -0.565 5.565 9 C -0.298 4.298 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.929 3.071 14 H -0.278 1.278 15 H -0.284 1.284 16 H -0.269 1.269 17 C -0.166 4.166 18 C 0.104 3.896 19 N -0.596 5.596 20 C 0.635 3.365 21 O -0.528 6.528 22 C -0.211 4.211 23 C -0.057 4.057 24 C -0.067 4.067 25 C -0.160 4.160 26 C -0.159 4.159 27 C 0.107 3.893 28 C -0.118 4.118 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.346 0.654 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.101 0.899 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.101 0.899 48 H 0.082 0.918 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.412 -0.938 17.277 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C 0.024 3.976 4 N -0.285 5.285 5 C -0.087 4.087 6 C 0.227 3.773 7 O -0.465 6.465 8 N -0.202 5.202 9 C -0.427 4.427 10 H 0.120 0.880 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.756 3.244 14 H -0.205 1.205 15 H -0.209 1.209 16 H -0.194 1.194 17 C -0.206 4.206 18 C -0.019 4.019 19 N -0.329 5.329 20 C 0.423 3.577 21 O -0.406 6.406 22 C -0.214 4.214 23 C -0.059 4.059 24 C -0.084 4.084 25 C -0.197 4.197 26 C -0.195 4.195 27 C -0.015 4.015 28 C -0.157 4.157 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.155 0.845 44 H 0.119 0.881 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.120 0.880 48 H 0.100 0.900 49 H 0.115 0.885 50 H 0.110 0.890 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.057 -0.419 17.799 21.502 hybrid contribution 1.029 0.021 -1.198 1.580 sum 13.087 -0.399 16.601 21.142 Atomic orbital electron populations 1.21716 0.94696 1.00931 1.03090 1.21555 0.97415 0.94157 1.01464 1.20955 0.90176 0.94919 0.91545 1.60255 1.61839 1.06393 0.99981 1.21759 0.97309 1.00024 0.89626 1.19839 0.86789 0.87114 0.83581 1.90531 1.40132 1.32307 1.83526 1.41864 1.40763 1.32969 1.04607 1.19689 1.22527 1.15649 0.84864 0.87970 1.25245 0.97354 0.96716 0.98635 1.69609 1.36207 1.27507 1.21101 0.85877 0.79796 0.78682 0.80065 1.20457 1.20939 1.19409 1.22692 0.98464 0.95952 1.03519 1.21815 0.99964 0.92686 0.87451 1.47952 1.07792 1.51645 1.25481 1.14706 0.81643 0.78948 0.82363 1.90841 1.77528 1.44551 1.27721 1.20551 0.92921 1.04807 1.03120 1.21338 0.92326 0.95445 0.96828 1.18945 0.83215 1.02930 1.03330 1.23126 0.99888 1.02293 0.94380 1.23128 1.02131 0.92018 1.02266 1.21808 0.78090 0.97915 1.03658 1.21981 1.02725 0.94563 0.96408 0.90296 0.93816 0.93161 0.92203 0.91836 0.83256 0.93908 0.89228 0.77562 0.91916 0.90957 0.89849 0.90642 0.89582 0.84549 0.88065 0.87309 0.87230 0.88028 0.89957 0.88485 0.88996 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.42 37.16 0.35 -1.40 16 2 C -0.11 -1.17 4.47 -26.72 -0.12 -1.28 16 3 C 0.12 1.30 0.37 -131.56 -0.05 1.25 16 4 N -0.65 -9.45 4.37 -101.17 -0.44 -9.89 16 5 C 0.05 0.74 5.26 -4.98 -0.03 0.71 16 6 C 0.44 10.00 7.83 -10.99 -0.09 9.91 16 7 O -0.58 -15.31 15.89 5.54 0.09 -15.22 16 8 N -0.57 -13.94 5.29 -10.96 -0.06 -13.99 16 9 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 10 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 12 N -0.90 -24.24 13.05 55.50 0.72 -23.52 16 13 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 C -0.17 -1.68 4.44 -26.61 -0.12 -1.80 16 18 C 0.10 1.13 5.89 -3.71 -0.02 1.11 16 19 N -0.60 -7.22 2.97 -175.64 -0.52 -7.75 16 20 C 0.63 8.91 7.55 -14.33 -0.11 8.80 16 21 O -0.53 -8.94 16.50 5.26 0.09 -8.85 16 22 C -0.21 -2.66 11.57 -38.84 -0.45 -3.11 16 23 C -0.06 -0.60 13.41 -37.12 -0.50 -1.10 16 24 C -0.07 -0.47 6.21 -93.40 -0.58 -1.05 16 25 C -0.16 -0.89 10.21 -26.69 -0.27 -1.16 16 26 C -0.16 -0.92 10.21 -26.69 -0.27 -1.19 16 27 C 0.11 1.24 5.99 -3.71 -0.02 1.22 16 28 C -0.12 -1.25 4.88 -26.61 -0.13 -1.38 16 29 H 0.08 1.17 7.21 -51.93 -0.37 0.80 16 30 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.55 6.81 -51.93 -0.35 0.19 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.70 6.61 -51.93 -0.34 0.36 16 34 H 0.35 5.34 5.23 -39.29 -0.21 5.13 16 35 H 0.04 0.62 6.61 -51.93 -0.34 0.28 16 36 H 0.09 1.37 6.19 -51.93 -0.32 1.05 16 37 H 0.39 9.22 7.90 -40.82 -0.32 8.90 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.83 6.57 -51.93 -0.34 0.49 16 41 H 0.08 0.90 7.05 -51.92 -0.37 0.53 16 42 H 0.09 0.87 6.32 -51.93 -0.33 0.54 16 43 H 0.14 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.08 1.01 6.80 -51.93 -0.35 0.66 16 49 H 0.10 1.17 7.00 -51.93 -0.36 0.81 16 50 H 0.09 0.97 6.64 -51.93 -0.34 0.62 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -32.54 407.55 -9.33 -41.87 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -7.68 Total: 13.64 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -2.64 Total: 1.69 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.30 Total: -55.15 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.17 Total: -24.07 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.54 -9.33 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733802678.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.240 kcal (2) G-P(sol) polarization free energy of solvation -32.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds