Wall clock time and date at job start Wed Apr 1 2020 05:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46771 * 2 1 4 4 N 1.46494 * 109.46191 * 305.20253 * 3 2 1 5 5 C 1.36947 * 119.99747 * 296.05595 * 4 3 2 6 6 H 1.07995 * 119.99922 * 5.52058 * 5 4 3 7 7 C 1.38813 * 119.99627 * 185.52180 * 5 4 3 8 8 N 1.31615 * 120.00423 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46998 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47144 * 119.99809 * 9 7 5 12 12 H 1.48498 * 109.46807 * 239.99786 * 9 7 5 13 13 C 1.53043 * 109.44759 * 65.16647 * 3 2 1 14 14 C 1.53188 * 109.31172 * 181.37605 * 13 3 2 15 15 N 1.46934 * 108.77740 * 305.36645 * 14 13 3 16 16 C 1.34779 * 120.62806 * 233.59017 * 15 14 13 17 17 O 1.21279 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99419 * 179.97438 * 16 15 14 19 19 H 1.08996 * 109.47484 * 304.99511 * 18 16 15 20 20 C 1.53000 * 109.47089 * 64.99796 * 18 16 15 21 21 O 1.42901 * 109.46645 * 184.99656 * 18 16 15 22 22 C 1.35673 * 116.99718 * 150.00187 * 21 18 16 23 23 C 1.38923 * 119.68491 * 179.72700 * 22 21 18 24 24 C 1.38382 * 119.10981 * 179.75113 * 23 22 21 25 25 C 1.38829 * 118.48686 * 0.51425 * 24 23 22 26 26 C 1.38045 * 119.28744 * 359.72461 * 25 24 23 27 27 N 1.31964 * 120.83807 * 0.02787 * 26 25 24 28 28 C 1.46928 * 118.73616 * 53.60551 * 15 14 13 29 29 C 1.53039 * 109.45821 * 185.22539 * 3 2 1 30 30 H 1.08995 * 109.47816 * 54.15563 * 1 2 3 31 31 H 1.09003 * 109.46892 * 174.16246 * 1 2 3 32 32 H 1.09001 * 109.47015 * 294.15334 * 1 2 3 33 33 H 1.08994 * 109.46797 * 240.00673 * 2 1 3 34 34 H 1.08995 * 109.47461 * 120.00202 * 2 1 3 35 35 H 0.96999 * 120.00639 * 116.06112 * 4 3 2 36 36 H 0.96993 * 120.00474 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.49472 * 61.42605 * 13 3 2 38 38 H 1.08996 * 109.49772 * 301.33089 * 13 3 2 39 39 H 1.09001 * 109.58542 * 185.58112 * 14 13 3 40 40 H 1.08998 * 109.58917 * 65.15050 * 14 13 3 41 41 H 1.09005 * 109.47242 * 59.99715 * 20 18 16 42 42 H 1.09005 * 109.46794 * 179.97438 * 20 18 16 43 43 H 1.08996 * 109.47696 * 299.99720 * 20 18 16 44 44 H 1.07999 * 120.44319 * 0.02562 * 23 22 21 45 45 H 1.08006 * 120.75371 * 180.24177 * 24 23 22 46 46 H 1.08000 * 120.35529 * 179.70835 * 25 24 23 47 47 H 1.07999 * 119.58257 * 180.02562 * 26 25 24 48 48 H 1.08999 * 109.58534 * 66.18163 * 28 15 14 49 49 H 1.09003 * 109.58511 * 186.60542 * 28 15 14 50 50 H 1.08999 * 109.49718 * 58.67845 * 29 3 2 51 51 H 1.09000 * 109.49994 * 298.58176 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.4519 2.1681 -1.1286 5 6 1.7399 1.7873 -2.4122 6 1 2.3274 0.8994 -2.5930 7 6 1.2765 2.5426 -3.4807 8 7 0.5601 3.6245 -3.2603 9 14 1.6687 2.0228 -5.2316 10 1 2.4825 0.7808 -5.2086 11 1 0.4041 1.7730 -5.9688 12 1 2.4319 3.1016 -5.9090 13 6 1.6383 2.1250 1.3097 14 6 2.1204 3.5789 1.2919 15 7 3.5645 3.5951 1.0211 16 6 4.4105 4.2443 1.8454 17 8 3.9818 4.8227 2.8214 18 6 5.8891 4.2512 1.5543 19 1 6.2454 3.2255 1.4588 20 6 6.1482 5.0049 0.2484 21 8 6.5819 4.8985 2.6235 22 6 7.8489 4.4843 2.8764 23 6 8.5759 5.0794 3.8998 24 6 9.8653 4.6442 4.1508 25 6 10.3883 3.6314 3.3584 26 6 9.6105 3.0889 2.3552 27 7 8.3820 3.5216 2.1429 28 6 4.0686 2.8905 -0.1656 29 6 3.5647 1.4443 -0.1314 30 1 -0.3634 0.6017 -0.8330 31 1 -0.3633 -1.0224 -0.1045 32 1 -0.3633 0.4205 0.9377 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.8586 2.9183 -0.9669 36 1 0.2360 4.1521 -4.0069 37 1 2.0958 1.6002 2.1485 38 1 0.5536 2.1026 1.4138 39 1 1.9250 4.0405 2.2598 40 1 1.5960 4.1283 0.5102 41 1 5.7919 6.0306 0.3439 42 1 7.2178 5.0103 0.0381 43 1 5.6198 4.5113 -0.5672 44 1 8.1390 5.8681 4.4943 45 1 10.4529 5.0855 4.9423 46 1 11.3930 3.2719 3.5248 47 1 10.0125 2.3005 1.7361 48 1 3.7029 3.3838 -1.0662 49 1 5.1586 2.8980 -0.1593 50 1 3.8510 0.9375 -1.0530 51 1 4.0040 0.9260 0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733807214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:45 Heat of formation + Delta-G solvation = -15.307740 kcal Electronic energy + Delta-G solvation = -31995.862119 eV Core-core repulsion = 27896.351546 eV Total energy + Delta-G solvation = -4099.510573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.97493 -40.04874 -38.44934 -37.42626 -34.86281 -32.85478 -32.69383 -32.29868 -30.68259 -30.35447 -29.70708 -28.99426 -25.58983 -24.51899 -23.85227 -23.77023 -23.24110 -22.34796 -21.30532 -19.63854 -18.64319 -18.16590 -17.08073 -17.05801 -16.64413 -16.11955 -15.85498 -15.58394 -15.00007 -14.77231 -14.51007 -14.17548 -14.03815 -13.84679 -13.61104 -13.57071 -13.46204 -13.25340 -13.05450 -12.71035 -12.42731 -12.30218 -12.20684 -12.00060 -11.73832 -11.51632 -11.26932 -11.17286 -11.09326 -10.92694 -10.73003 -10.64340 -10.36085 -10.21563 -10.19466 -10.04444 -9.81799 -9.65598 -9.49735 -9.32474 -8.94944 -8.69711 -8.21517 -6.96707 -5.80346 -3.08853 0.92383 1.03290 2.54121 2.79132 3.39078 3.45578 3.47939 3.51204 3.57608 4.06161 4.53311 4.55102 4.60372 4.77983 4.87022 4.93267 5.00731 5.06478 5.22668 5.32588 5.34401 5.46681 5.55512 5.56188 5.62733 5.64932 5.68814 5.72941 5.78660 5.93771 5.95591 5.96013 6.09379 6.12724 6.15762 6.19022 6.21804 6.24724 6.43052 6.50506 6.55981 6.64059 6.75939 6.85232 6.93882 7.03619 7.10590 7.16822 7.62523 7.69914 7.71532 8.37760 8.38184 9.49885 10.06668 10.42669 11.41827 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.002875 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.586508 B = 9735.733062 C =10364.412467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.202 3.798 4 N -0.712 5.712 5 C -0.229 4.229 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.930 5.930 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.293 1.293 13 C -0.130 4.130 14 C 0.118 3.882 15 N -0.591 5.591 16 C 0.515 3.485 17 O -0.538 6.538 18 C 0.076 3.924 19 H 0.113 0.887 20 C -0.172 4.172 21 O -0.276 6.276 22 C 0.327 3.673 23 C -0.191 4.191 24 C -0.041 4.041 25 C -0.218 4.218 26 C 0.141 3.859 27 N -0.541 5.541 28 C 0.107 3.893 29 C -0.134 4.134 30 H 0.077 0.923 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.384 0.616 36 H 0.254 0.746 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.091 0.909 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.136 0.864 47 H 0.159 0.841 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.254 -1.312 12.303 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C 0.111 3.889 4 N -0.354 5.354 5 C -0.361 4.361 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.578 5.578 9 Si 0.730 3.270 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.221 1.221 13 C -0.169 4.169 14 C -0.004 4.004 15 N -0.325 5.325 16 C 0.301 3.699 17 O -0.416 6.416 18 C 0.016 3.984 19 H 0.130 0.870 20 C -0.230 4.230 21 O -0.182 6.182 22 C 0.148 3.852 23 C -0.211 4.211 24 C -0.067 4.067 25 C -0.238 4.238 26 C -0.014 4.014 27 N -0.265 5.265 28 C -0.015 4.015 29 C -0.174 4.174 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.110 0.890 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.154 0.846 47 H 0.177 0.823 48 H 0.115 0.885 49 H 0.090 0.910 50 H 0.096 0.904 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.388 -1.214 12.113 19.621 hybrid contribution 0.558 0.069 -0.644 0.855 sum 15.946 -1.145 11.469 19.675 Atomic orbital electron populations 1.21669 0.96105 1.00106 1.02020 1.21915 0.96410 0.98158 0.99898 1.19539 0.90677 0.91177 0.87555 1.42472 1.55501 1.37090 1.00361 1.19122 1.27676 1.06337 0.82920 0.91228 1.24687 1.01094 0.97382 0.97501 1.69653 1.40703 1.17422 1.30053 0.86252 0.77442 0.77505 0.85787 1.20662 1.22110 1.22062 1.22120 1.01411 0.95292 0.98037 1.21607 0.79021 0.97476 1.02295 1.47977 1.07459 1.51344 1.25680 1.20081 0.87393 0.79389 0.83034 1.90679 1.78227 1.44390 1.28281 1.22085 0.90003 0.99669 0.86659 0.86962 1.22357 1.03458 1.01706 0.95431 1.86377 1.22031 1.58372 1.51405 1.19950 0.85408 0.89495 0.90376 1.21101 0.95316 1.04578 1.00150 1.21409 0.93692 0.94220 0.97338 1.21968 1.02180 1.00487 0.99206 1.22443 0.87864 0.96578 0.94565 1.67300 1.15098 1.14510 1.29610 1.22005 0.97584 0.93704 0.88201 1.22282 0.98577 0.95207 1.01329 0.90454 0.94789 0.94218 0.92293 0.94154 0.78163 0.93645 0.92067 0.90494 0.89963 0.90168 0.91274 0.91060 0.89048 0.83997 0.84223 0.84634 0.82342 0.88539 0.90987 0.90430 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.41 37.16 0.35 -2.04 16 2 C -0.12 -2.09 4.78 -26.73 -0.13 -2.21 16 3 C 0.20 3.53 0.44 -131.78 -0.06 3.47 16 4 N -0.71 -15.23 2.99 -47.19 -0.14 -15.37 16 5 C -0.23 -5.54 8.59 -15.05 -0.13 -5.67 16 6 H 0.07 1.67 6.78 -52.49 -0.36 1.32 16 7 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 8 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 9 Si 0.90 21.13 29.55 -169.99 -5.02 16.10 16 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 C -0.13 -2.08 4.73 -26.61 -0.13 -2.21 16 14 C 0.12 2.00 6.16 -3.71 -0.02 1.98 16 15 N -0.59 -9.86 2.97 -172.76 -0.51 -10.37 16 16 C 0.51 8.97 7.12 -10.98 -0.08 8.89 16 17 O -0.54 -11.09 15.92 -14.30 -0.23 -11.31 16 18 C 0.08 1.12 2.07 -27.88 -0.06 1.06 16 19 H 0.11 1.59 6.27 -51.93 -0.33 1.27 16 20 C -0.17 -2.27 9.10 37.16 0.34 -1.94 16 21 O -0.28 -4.29 9.30 -38.58 -0.36 -4.65 16 22 C 0.33 4.31 7.45 -17.12 -0.13 4.18 16 23 C -0.19 -2.01 10.04 -39.27 -0.39 -2.41 16 24 C -0.04 -0.32 10.17 -39.31 -0.40 -0.72 16 25 C -0.22 -1.62 10.11 -39.43 -0.40 -2.02 16 26 C 0.14 1.28 11.18 -17.57 -0.20 1.08 16 27 N -0.54 -6.61 8.65 -13.33 -0.12 -6.73 16 28 C 0.11 1.71 4.71 -3.71 -0.02 1.69 16 29 C -0.13 -2.18 4.64 -26.61 -0.12 -2.30 16 30 H 0.08 1.54 7.26 -51.93 -0.38 1.17 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.61 6.83 -51.93 -0.35 0.26 16 33 H 0.06 1.06 7.56 -51.93 -0.39 0.67 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.38 9.04 6.61 -40.82 -0.27 8.77 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.21 6.64 -51.93 -0.34 0.86 16 39 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 40 H 0.08 1.49 7.02 -51.93 -0.36 1.13 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.19 5.41 -51.93 -0.28 0.91 16 44 H 0.14 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 46 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 47 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.10 1.82 7.62 -51.93 -0.40 1.43 16 49 H 0.07 0.99 4.66 -51.93 -0.24 0.75 16 50 H 0.08 1.32 7.22 -51.93 -0.37 0.95 16 51 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -30.23 396.27 -9.15 -39.39 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -7.81 Total: 11.81 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.66 Total: 0.49 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.05 Total: -57.80 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.59 Total: -15.96 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.23 -9.15 -39.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733807214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.080 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds