Wall clock time and date at job start Wed Apr 1 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46771 * 2 1 4 4 N 1.46494 * 109.46191 * 305.20253 * 3 2 1 5 5 C 1.36947 * 119.99747 * 296.05595 * 4 3 2 6 6 H 1.07995 * 119.99922 * 5.52058 * 5 4 3 7 7 C 1.38813 * 119.99627 * 185.52180 * 5 4 3 8 8 N 1.31615 * 120.00423 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46998 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47144 * 119.99809 * 9 7 5 12 12 H 1.48498 * 109.46807 * 239.99786 * 9 7 5 13 13 C 1.53043 * 109.44759 * 65.16647 * 3 2 1 14 14 C 1.53188 * 109.31172 * 181.37605 * 13 3 2 15 15 N 1.46934 * 108.77740 * 305.36645 * 14 13 3 16 16 C 1.34779 * 120.62806 * 233.59017 * 15 14 13 17 17 O 1.21279 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.50702 * 119.99419 * 179.97438 * 16 15 14 19 19 H 1.08996 * 109.47484 * 304.99511 * 18 16 15 20 20 C 1.53000 * 109.47089 * 64.99796 * 18 16 15 21 21 O 1.42901 * 109.46645 * 184.99656 * 18 16 15 22 22 C 1.35673 * 116.99718 * 150.00187 * 21 18 16 23 23 C 1.38923 * 119.68491 * 179.72700 * 22 21 18 24 24 C 1.38382 * 119.10981 * 179.75113 * 23 22 21 25 25 C 1.38829 * 118.48686 * 0.51425 * 24 23 22 26 26 C 1.38045 * 119.28744 * 359.72461 * 25 24 23 27 27 N 1.31964 * 120.83807 * 0.02787 * 26 25 24 28 28 C 1.46928 * 118.73616 * 53.60551 * 15 14 13 29 29 C 1.53039 * 109.45821 * 185.22539 * 3 2 1 30 30 H 1.08995 * 109.47816 * 54.15563 * 1 2 3 31 31 H 1.09003 * 109.46892 * 174.16246 * 1 2 3 32 32 H 1.09001 * 109.47015 * 294.15334 * 1 2 3 33 33 H 1.08994 * 109.46797 * 240.00673 * 2 1 3 34 34 H 1.08995 * 109.47461 * 120.00202 * 2 1 3 35 35 H 0.96999 * 120.00639 * 116.06112 * 4 3 2 36 36 H 0.96993 * 120.00474 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.49472 * 61.42605 * 13 3 2 38 38 H 1.08996 * 109.49772 * 301.33089 * 13 3 2 39 39 H 1.09001 * 109.58542 * 185.58112 * 14 13 3 40 40 H 1.08998 * 109.58917 * 65.15050 * 14 13 3 41 41 H 1.09005 * 109.47242 * 59.99715 * 20 18 16 42 42 H 1.09005 * 109.46794 * 179.97438 * 20 18 16 43 43 H 1.08996 * 109.47696 * 299.99720 * 20 18 16 44 44 H 1.07999 * 120.44319 * 0.02562 * 23 22 21 45 45 H 1.08006 * 120.75371 * 180.24177 * 24 23 22 46 46 H 1.08000 * 120.35529 * 179.70835 * 25 24 23 47 47 H 1.07999 * 119.58257 * 180.02562 * 26 25 24 48 48 H 1.08999 * 109.58534 * 66.18163 * 28 15 14 49 49 H 1.09003 * 109.58511 * 186.60542 * 28 15 14 50 50 H 1.08999 * 109.49718 * 58.67845 * 29 3 2 51 51 H 1.09000 * 109.49994 * 298.58176 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.4519 2.1681 -1.1286 5 6 1.7399 1.7873 -2.4122 6 1 2.3274 0.8994 -2.5930 7 6 1.2765 2.5426 -3.4807 8 7 0.5601 3.6245 -3.2603 9 14 1.6687 2.0228 -5.2316 10 1 2.4825 0.7808 -5.2086 11 1 0.4041 1.7730 -5.9688 12 1 2.4319 3.1016 -5.9090 13 6 1.6383 2.1250 1.3097 14 6 2.1204 3.5789 1.2919 15 7 3.5645 3.5951 1.0211 16 6 4.4105 4.2443 1.8454 17 8 3.9818 4.8227 2.8214 18 6 5.8891 4.2512 1.5543 19 1 6.2454 3.2255 1.4588 20 6 6.1482 5.0049 0.2484 21 8 6.5819 4.8985 2.6235 22 6 7.8489 4.4843 2.8764 23 6 8.5759 5.0794 3.8998 24 6 9.8653 4.6442 4.1508 25 6 10.3883 3.6314 3.3584 26 6 9.6105 3.0889 2.3552 27 7 8.3820 3.5216 2.1429 28 6 4.0686 2.8905 -0.1656 29 6 3.5647 1.4443 -0.1314 30 1 -0.3634 0.6017 -0.8330 31 1 -0.3633 -1.0224 -0.1045 32 1 -0.3633 0.4205 0.9377 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.8586 2.9183 -0.9669 36 1 0.2360 4.1521 -4.0069 37 1 2.0958 1.6002 2.1485 38 1 0.5536 2.1026 1.4138 39 1 1.9250 4.0405 2.2598 40 1 1.5960 4.1283 0.5102 41 1 5.7919 6.0306 0.3439 42 1 7.2178 5.0103 0.0381 43 1 5.6198 4.5113 -0.5672 44 1 8.1390 5.8681 4.4943 45 1 10.4529 5.0855 4.9423 46 1 11.3930 3.2719 3.5248 47 1 10.0125 2.3005 1.7361 48 1 3.7029 3.3838 -1.0662 49 1 5.1586 2.8980 -0.1593 50 1 3.8510 0.9375 -1.0530 51 1 4.0040 0.9260 0.7209 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733807214.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:44 Heat of formation + Delta-G solvation = -32.977926 kcal Electronic energy + Delta-G solvation = -31996.628356 eV Core-core repulsion = 27896.351546 eV Total energy + Delta-G solvation = -4100.276810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.99716 -41.20562 -39.69339 -38.60894 -36.35198 -34.52798 -33.63340 -33.35316 -31.99431 -31.52945 -30.93005 -30.55095 -26.93465 -25.76223 -25.49643 -24.67972 -24.27737 -23.53917 -22.59039 -20.94134 -19.68742 -19.55572 -18.89762 -18.23020 -17.71190 -17.05696 -16.79792 -16.69902 -16.50908 -16.02956 -15.70553 -15.49701 -15.42994 -15.28349 -15.06233 -14.76178 -14.59925 -14.33836 -14.09091 -13.97448 -13.90925 -13.60662 -13.24410 -13.11970 -12.87036 -12.85324 -12.80560 -12.73401 -12.55349 -12.27525 -12.22646 -12.08359 -12.04977 -11.77878 -11.51557 -11.37023 -10.98106 -10.89310 -10.83416 -10.68092 -10.55334 -9.67417 -9.48673 -8.80981 -7.80577 -5.05318 0.21755 0.34324 1.40832 1.44714 1.50317 1.53500 1.60113 2.35550 2.64694 2.84099 3.26142 3.31144 3.53951 3.82133 3.82259 3.90773 3.93831 3.99911 4.06331 4.13188 4.18812 4.23650 4.24675 4.36369 4.41228 4.58153 4.59033 4.60015 4.65372 4.70659 4.77823 4.82000 4.82974 4.86010 5.01387 5.08218 5.09055 5.12806 5.19717 5.26033 5.30337 5.36492 5.39279 5.52981 5.57832 5.65945 5.67859 5.77529 6.17784 6.36003 6.41431 6.87095 7.00936 7.49237 8.25232 8.49302 9.43012 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013813 B = 0.002875 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.586508 B = 9735.733062 C =10364.412467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.195 3.805 4 N -0.715 5.715 5 C -0.199 4.199 6 H 0.076 0.924 7 C -0.073 4.073 8 N -0.968 5.968 9 Si 0.950 3.050 10 H -0.266 1.266 11 H -0.307 1.307 12 H -0.303 1.303 13 C -0.120 4.120 14 C 0.120 3.880 15 N -0.588 5.588 16 C 0.511 3.489 17 O -0.575 6.575 18 C 0.085 3.915 19 H 0.121 0.879 20 C -0.163 4.163 21 O -0.302 6.302 22 C 0.291 3.709 23 C -0.205 4.205 24 C -0.036 4.036 25 C -0.203 4.203 26 C 0.126 3.874 27 N -0.562 5.562 28 C 0.114 3.886 29 C -0.130 4.130 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.371 0.629 36 H 0.243 0.757 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.143 0.857 45 H 0.175 0.825 46 H 0.172 0.828 47 H 0.186 0.814 48 H 0.066 0.934 49 H 0.098 0.902 50 H 0.073 0.927 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.388 -3.396 13.736 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.105 3.895 4 N -0.355 5.355 5 C -0.331 4.331 6 H 0.094 0.906 7 C -0.265 4.265 8 N -0.621 5.621 9 Si 0.782 3.218 10 H -0.190 1.190 11 H -0.235 1.235 12 H -0.231 1.231 13 C -0.158 4.158 14 C -0.002 4.002 15 N -0.320 5.320 16 C 0.299 3.701 17 O -0.455 6.455 18 C 0.026 3.974 19 H 0.139 0.861 20 C -0.221 4.221 21 O -0.209 6.209 22 C 0.113 3.887 23 C -0.225 4.225 24 C -0.061 4.061 25 C -0.223 4.223 26 C -0.029 4.029 27 N -0.286 5.286 28 C -0.008 4.008 29 C -0.170 4.170 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.204 0.796 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.102 0.898 43 H 0.110 0.890 44 H 0.161 0.839 45 H 0.192 0.808 46 H 0.190 0.810 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.116 0.884 50 H 0.091 0.909 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 18.571 -3.361 13.559 23.238 hybrid contribution -0.279 0.653 -0.943 1.180 sum 18.291 -2.708 12.616 22.385 Atomic orbital electron populations 1.21594 0.96222 1.00427 1.01181 1.21865 0.96234 0.97184 1.00653 1.19811 0.91427 0.91462 0.86771 1.42582 1.55334 1.36883 1.00726 1.19375 1.24760 1.05091 0.83868 0.90591 1.25251 1.02668 0.98160 1.00381 1.69794 1.43239 1.19039 1.30006 0.85398 0.76548 0.77334 0.82500 1.19007 1.23523 1.23082 1.22042 1.01767 0.94282 0.97711 1.21501 0.79359 0.98126 1.01260 1.48010 1.07271 1.51091 1.25677 1.20626 0.88657 0.78427 0.82356 1.90650 1.79102 1.45860 1.29888 1.21943 0.87967 1.00335 0.87198 0.86146 1.22286 1.04192 1.00887 0.94703 1.86332 1.23644 1.59196 1.51750 1.20224 0.84996 0.91300 0.92195 1.21345 0.96489 1.04893 0.99794 1.21864 0.92603 0.93839 0.97818 1.22414 1.03292 0.99071 0.97495 1.23040 0.87101 0.97203 0.95531 1.67231 1.16670 1.14630 1.30033 1.21932 0.99032 0.93219 0.86605 1.22240 0.97374 0.95250 1.02121 0.94120 0.93272 0.92847 0.93486 0.91349 0.79631 0.94782 0.90257 0.90145 0.90248 0.92414 0.92308 0.89783 0.88989 0.83893 0.80807 0.81027 0.79732 0.91603 0.88387 0.90892 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.41 71.98 0.68 -3.71 16 2 C -0.12 -3.74 4.78 30.60 0.15 -3.60 16 3 C 0.20 6.56 0.44 3.63 0.00 6.56 16 4 N -0.72 -30.77 2.99 -303.22 -0.91 -31.67 16 5 C -0.20 -9.61 8.59 84.03 0.72 -8.89 16 6 H 0.08 3.56 6.78 -2.91 -0.02 3.54 16 7 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 8 N -0.97 -56.20 13.06 21.65 0.28 -55.92 16 9 Si 0.95 44.14 29.55 68.60 2.03 46.17 16 10 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 11 H -0.31 -14.78 7.11 99.48 0.71 -14.08 16 12 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 13 C -0.12 -3.68 4.73 30.67 0.15 -3.54 16 14 C 0.12 4.12 6.16 86.36 0.53 4.66 16 15 N -0.59 -19.58 2.97 -818.89 -2.43 -22.02 16 16 C 0.51 17.98 7.12 87.66 0.62 18.60 16 17 O -0.57 -24.25 15.92 15.96 0.25 -23.99 16 18 C 0.09 2.52 2.07 29.85 0.06 2.58 16 19 H 0.12 3.29 6.27 -2.39 -0.01 3.28 16 20 C -0.16 -4.29 9.10 71.98 0.66 -3.64 16 21 O -0.30 -9.51 9.30 -70.92 -0.66 -10.17 16 22 C 0.29 7.51 7.45 84.79 0.63 8.15 16 23 C -0.20 -4.09 10.04 22.47 0.23 -3.86 16 24 C -0.04 -0.45 10.17 22.45 0.23 -0.22 16 25 C -0.20 -2.22 10.11 22.37 0.23 -1.99 16 26 C 0.13 1.93 11.18 84.63 0.95 2.87 16 27 N -0.56 -12.87 8.65 -308.95 -2.67 -15.55 16 28 C 0.11 3.56 4.71 86.36 0.41 3.97 16 29 C -0.13 -3.97 4.64 30.67 0.14 -3.83 16 30 H 0.04 1.60 7.26 -2.39 -0.02 1.58 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.05 1.54 6.83 -2.39 -0.02 1.53 16 33 H 0.05 1.58 7.56 -2.39 -0.02 1.57 16 34 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.37 18.00 6.61 -92.71 -0.61 17.39 16 36 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 37 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 38 H 0.08 2.43 6.64 -2.39 -0.02 2.41 16 39 H 0.08 2.78 7.01 -2.39 -0.02 2.76 16 40 H 0.06 2.25 7.02 -2.39 -0.02 2.23 16 41 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 42 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.09 2.36 5.41 -2.39 -0.01 2.35 16 44 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 45 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 46 H 0.17 0.64 8.06 -2.91 -0.02 0.61 16 47 H 0.19 1.65 8.06 -2.91 -0.02 1.63 16 48 H 0.07 2.51 7.62 -2.39 -0.02 2.49 16 49 H 0.10 2.55 4.66 -2.39 -0.01 2.54 16 50 H 0.07 2.33 7.22 -2.39 -0.02 2.31 16 51 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -68.16 396.27 3.06 -65.09 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.33 Total: 37.36 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.84 Total: 10.70 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -5.73 Total: -125.16 kcal Atomic # 8 Polarization: -33.76 SS G_CDS: -0.41 Total: -34.16 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -68.16 3.06 -65.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733807214.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.117 kcal (2) G-P(sol) polarization free energy of solvation -68.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds