Wall clock time and date at job start Wed Apr 1 2020 04:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46999 * 2 1 4 4 C 1.38673 * 120.41721 * 270.02125 * 3 2 1 5 5 C 1.38633 * 118.41658 * 179.71320 * 4 3 2 6 6 C 1.38222 * 119.16325 * 0.55173 * 5 4 3 7 7 C 1.50696 * 119.61990 * 179.71747 * 6 5 4 8 8 C 1.50697 * 109.47699 * 124.72472 * 7 6 5 9 9 O 1.21277 * 119.99849 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00341 * 179.97438 * 8 7 6 11 11 C 1.47158 * 120.98045 * 0.02562 * 10 8 7 12 12 C 1.53297 * 108.38348 * 230.55541 * 11 10 8 13 13 O 1.42955 * 109.22250 * 307.69634 * 12 11 10 14 14 C 1.42969 * 114.16930 * 62.58015 * 13 12 11 15 15 H 1.09003 * 109.50828 * 57.39050 * 14 13 12 16 16 C 1.52999 * 109.51533 * 177.49118 * 14 13 12 17 17 H 1.08996 * 109.46929 * 184.99571 * 16 14 13 18 18 C 1.52997 * 109.47317 * 305.00467 * 16 14 13 19 19 N 1.46506 * 109.46684 * 65.00523 * 16 14 13 20 20 C 1.36929 * 119.99904 * 154.99978 * 19 16 14 21 21 H 1.08004 * 120.00323 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99984 * 179.97438 * 20 19 16 23 23 N 1.31615 * 120.00318 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47356 * 59.99952 * 24 22 20 26 26 H 1.48497 * 109.47510 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47042 * 300.00443 * 24 22 20 28 28 C 1.47143 * 120.98541 * 180.02562 * 10 8 7 29 29 N 1.31853 * 120.76255 * 359.43346 * 6 5 4 30 30 C 1.31891 * 121.72603 * 0.27958 * 29 6 5 31 31 H 1.08999 * 109.47107 * 59.99932 * 1 2 3 32 32 H 1.08997 * 109.47177 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46901 * 300.00159 * 1 2 3 34 34 H 1.08995 * 109.47277 * 240.00152 * 2 1 3 35 35 H 1.08999 * 109.47107 * 120.00068 * 2 1 3 36 36 H 1.08000 * 120.78863 * 0.02562 * 4 3 2 37 37 H 1.07998 * 120.41564 * 180.28359 * 5 4 3 38 38 H 1.08998 * 109.47129 * 4.71886 * 7 6 5 39 39 H 1.09002 * 109.46830 * 244.72750 * 7 6 5 40 40 H 1.09001 * 109.68055 * 110.82949 * 11 10 8 41 41 H 1.08997 * 109.70946 * 350.29704 * 11 10 8 42 42 H 1.08999 * 109.51038 * 187.77430 * 12 11 10 43 43 H 1.09003 * 109.51214 * 67.62197 * 12 11 10 44 44 H 1.09002 * 109.47153 * 299.99641 * 18 16 14 45 45 H 1.09001 * 109.46832 * 179.97438 * 18 16 14 46 46 H 1.09004 * 109.47261 * 59.99813 * 18 16 14 47 47 H 0.97000 * 120.00117 * 334.99772 * 19 16 14 48 48 H 0.96990 * 120.00689 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.68370 * 9.71996 * 28 10 8 50 50 H 1.09004 * 109.68539 * 249.16877 * 28 10 8 51 51 H 1.07995 * 119.61564 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2659 2.0829 -1.1959 5 6 2.7220 3.3912 -1.1475 6 6 2.9382 3.9841 0.0823 7 6 3.4400 5.4036 0.1468 8 6 2.4987 6.2317 0.9830 9 8 1.5167 5.7198 1.4774 10 7 2.7480 7.5413 1.1814 11 6 3.9327 8.1847 0.5913 12 6 4.6695 8.9484 1.6975 13 8 3.7474 9.8101 2.3690 14 6 2.6826 9.1246 3.0326 15 1 3.0969 8.4172 3.7510 16 6 1.7998 10.1378 3.7639 17 1 1.0415 9.6090 4.3413 18 6 2.6627 10.9802 4.7055 19 7 1.1472 11.0123 2.7862 20 6 -0.0328 11.6312 3.1015 21 1 -0.4828 11.4745 4.0707 22 6 -0.6509 12.4601 2.1753 23 7 -0.1029 12.6508 0.9939 24 14 -2.2610 13.3039 2.6051 25 1 -2.0619 14.1761 3.7904 26 1 -2.7111 14.1273 1.4541 27 1 -3.2905 12.2788 2.9123 28 6 1.8439 8.3699 1.9943 29 7 2.7052 3.3239 1.1996 30 6 2.2656 2.0804 1.1916 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0918 1.5927 -2.1423 37 1 2.9101 3.9387 -2.0592 38 1 3.4908 5.8171 -0.8604 39 1 4.4331 5.4178 0.5959 40 1 3.6226 8.8786 -0.1901 41 1 4.5907 7.4257 0.1682 42 1 5.4699 9.5436 1.2580 43 1 5.0910 8.2398 2.4105 44 1 3.1482 10.3296 5.4330 45 1 2.0338 11.7023 5.2262 46 1 3.4210 11.5090 4.1280 47 1 1.5511 11.1528 1.9155 48 1 -0.5349 13.2297 0.3466 49 1 1.1184 7.7333 2.5009 50 1 1.3237 9.0825 1.3541 51 1 2.0865 1.5717 2.1272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734180931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:37 Heat of formation + Delta-G solvation = -32.250753 kcal Electronic energy + Delta-G solvation = -30769.930386 eV Core-core repulsion = 26669.685108 eV Total energy + Delta-G solvation = -4100.245278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.75878 -39.92373 -38.21360 -35.44724 -35.21176 -34.40568 -32.56552 -32.24978 -31.63009 -30.13947 -28.51727 -28.33320 -26.99443 -24.33551 -23.98959 -23.55754 -23.44325 -22.21960 -21.27924 -19.65357 -19.04217 -17.44092 -17.23035 -16.75486 -16.68569 -16.09659 -15.67598 -15.53128 -15.22217 -14.74153 -14.64559 -14.35781 -14.23770 -14.10461 -13.87110 -13.49508 -13.34925 -13.28328 -13.10603 -13.01465 -12.66483 -12.36384 -12.30071 -12.07155 -11.87021 -11.72853 -11.61277 -11.33010 -11.27528 -11.13868 -10.79166 -10.74379 -10.40615 -10.26090 -10.00746 -9.92308 -9.82678 -9.64505 -9.53059 -9.43842 -8.95006 -8.87854 -8.26551 -6.88909 -5.70538 -2.98614 0.88719 1.14452 2.77489 3.00373 3.48327 3.52707 3.53404 3.63342 4.01565 4.04954 4.39068 4.46522 4.54664 4.64043 4.65525 4.75527 4.88643 4.96949 4.99647 5.03183 5.04641 5.17076 5.18610 5.23413 5.39732 5.40622 5.45876 5.52060 5.52610 5.58808 5.64891 5.66374 5.75105 5.85274 5.86959 5.90315 5.93977 6.06460 6.09125 6.27745 6.44805 6.46552 6.52124 6.66443 6.73085 6.84318 7.19369 7.50926 7.53735 7.75448 7.91099 8.32659 8.47828 9.59906 10.16857 10.54013 11.51800 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.002360 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.506427 B =11862.639409 C =12910.430358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.140 4.140 4 C -0.075 4.075 5 C -0.163 4.163 6 C 0.139 3.861 7 C -0.091 4.091 8 C 0.520 3.480 9 O -0.522 6.522 10 N -0.616 5.616 11 C 0.071 3.929 12 C 0.048 3.952 13 O -0.360 6.360 14 C 0.078 3.922 15 H 0.054 0.946 16 C 0.182 3.818 17 H 0.059 0.941 18 C -0.159 4.159 19 N -0.717 5.717 20 C -0.238 4.238 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.088 3.912 29 N -0.452 5.452 30 C 0.107 3.893 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.049 0.951 44 H 0.032 0.968 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.389 0.611 48 H 0.254 0.746 49 H 0.095 0.905 50 H 0.097 0.903 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.922 -23.083 -5.199 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.142 4.142 4 C -0.101 4.101 5 C -0.183 4.183 6 C 0.001 3.999 7 C -0.131 4.131 8 C 0.307 3.693 9 O -0.397 6.397 10 N -0.351 5.351 11 C -0.053 4.053 12 C -0.031 4.031 13 O -0.278 6.278 14 C 0.019 3.981 15 H 0.072 0.928 16 C 0.071 3.929 17 H 0.077 0.923 18 C -0.219 4.219 19 N -0.360 5.360 20 C -0.369 4.369 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.034 4.034 29 N -0.160 5.160 30 C -0.051 4.051 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.150 0.850 37 H 0.152 0.848 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.120 0.880 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.064 0.936 49 H 0.113 0.887 50 H 0.115 0.885 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.373 -22.670 -4.072 25.687 hybrid contribution -0.840 -0.002 -1.018 1.320 sum 10.533 -22.672 -5.089 25.512 Atomic orbital electron populations 1.21769 0.94461 1.01833 1.02556 1.20455 0.96338 0.91819 1.03012 1.20927 1.00992 0.97922 0.94363 1.21393 0.96444 0.94189 0.98113 1.21909 1.01671 0.96074 0.98637 1.20541 0.95767 0.94820 0.88755 1.20630 1.00086 0.90377 1.02032 1.20158 0.86461 0.81438 0.81280 1.90729 1.28819 1.70658 1.49524 1.48216 1.26122 1.08713 1.52007 1.22477 0.87552 0.97923 0.97319 1.22876 0.92276 0.94164 0.93747 1.88103 1.38058 1.32354 1.69260 1.22919 0.87817 0.94540 0.92827 0.92761 1.20264 0.91726 0.90265 0.90613 0.92276 1.22322 1.00351 1.00289 0.98946 1.42394 1.24676 1.53899 1.14994 1.19198 0.97803 1.20908 0.98970 0.91272 1.24710 0.99076 1.00777 0.96300 1.69652 1.40205 1.42072 1.06054 0.86300 0.83823 0.79302 0.76948 1.21357 1.21811 1.21339 1.22407 0.92455 0.94104 0.94394 1.67442 1.10160 1.07651 1.30729 1.22620 0.94982 0.90138 0.97396 0.92554 0.92209 0.92285 0.90963 0.90708 0.84981 0.84801 0.87436 0.87244 0.89999 0.89506 0.88021 0.93299 0.94886 0.92859 0.92477 0.77624 0.93583 0.88691 0.88469 0.83052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.51 6.09 -27.88 -0.17 -0.68 16 3 C -0.14 -1.30 5.15 -104.48 -0.54 -1.84 16 4 C -0.08 -0.67 9.86 -39.27 -0.39 -1.06 16 5 C -0.16 -1.60 9.71 -39.44 -0.38 -1.98 16 6 C 0.14 1.71 5.76 -82.59 -0.48 1.23 16 7 C -0.09 -0.97 4.47 -29.04 -0.13 -1.10 16 8 C 0.52 8.01 7.64 -10.99 -0.08 7.93 16 9 O -0.52 -10.31 14.80 5.56 0.08 -10.23 16 10 N -0.62 -9.24 3.02 -172.26 -0.52 -9.76 16 11 C 0.07 0.80 6.54 -3.53 -0.02 0.78 16 12 C 0.05 0.57 6.98 37.31 0.26 0.83 16 13 O -0.36 -6.10 9.24 -35.23 -0.33 -6.42 16 14 C 0.08 1.37 2.58 -26.56 -0.07 1.30 16 15 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 16 C 0.18 3.70 2.81 -67.93 -0.19 3.51 16 17 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 18 C -0.16 -3.01 9.29 37.16 0.35 -2.67 16 19 N -0.72 -17.91 4.24 -53.43 -0.23 -18.13 16 20 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 21 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -28.18 13.06 55.49 0.72 -27.45 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.66 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C 0.09 1.61 5.82 -3.52 -0.02 1.59 16 29 N -0.45 -6.33 9.23 -9.48 -0.09 -6.41 16 30 C 0.11 1.21 10.86 -17.55 -0.19 1.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 35 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 36 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.13 0.95 7.95 -52.49 -0.42 0.54 16 38 H 0.11 0.83 7.74 -51.93 -0.40 0.43 16 39 H 0.11 0.94 7.66 -51.93 -0.40 0.55 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.65 6.06 -51.93 -0.31 0.34 16 42 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 1.13 7.56 -51.93 -0.39 0.73 16 47 H 0.39 10.43 7.07 -40.82 -0.29 10.15 16 48 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.09 1.87 7.08 -51.93 -0.37 1.51 16 50 H 0.10 2.08 6.92 -51.93 -0.36 1.72 16 51 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 411.20 15.07 6.20 6.20 Total: -1.00 -35.31 411.20 -9.51 -44.82 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -8.40 Total: 8.69 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.93 Total: 1.05 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.11 Total: -61.76 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.24 Total: -16.65 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -35.31 -9.51 -44.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734180931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.573 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds