Wall clock time and date at job start Wed Apr 1 2020 04:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46999 * 2 1 4 4 C 1.38673 * 120.41721 * 270.02125 * 3 2 1 5 5 C 1.38633 * 118.41658 * 179.71320 * 4 3 2 6 6 C 1.38222 * 119.16325 * 0.55173 * 5 4 3 7 7 C 1.50696 * 119.61990 * 179.71747 * 6 5 4 8 8 C 1.50697 * 109.47699 * 124.72472 * 7 6 5 9 9 O 1.21277 * 119.99849 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00341 * 179.97438 * 8 7 6 11 11 C 1.47158 * 120.98045 * 0.02562 * 10 8 7 12 12 C 1.53297 * 108.38348 * 230.55541 * 11 10 8 13 13 O 1.42955 * 109.22250 * 307.69634 * 12 11 10 14 14 C 1.42969 * 114.16930 * 62.58015 * 13 12 11 15 15 H 1.09003 * 109.50828 * 57.39050 * 14 13 12 16 16 C 1.52999 * 109.51533 * 177.49118 * 14 13 12 17 17 H 1.08996 * 109.46929 * 184.99571 * 16 14 13 18 18 C 1.52997 * 109.47317 * 305.00467 * 16 14 13 19 19 N 1.46506 * 109.46684 * 65.00523 * 16 14 13 20 20 C 1.36929 * 119.99904 * 154.99978 * 19 16 14 21 21 H 1.08004 * 120.00323 * 359.97438 * 20 19 16 22 22 C 1.38815 * 119.99984 * 179.97438 * 20 19 16 23 23 N 1.31615 * 120.00318 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47356 * 59.99952 * 24 22 20 26 26 H 1.48497 * 109.47510 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47042 * 300.00443 * 24 22 20 28 28 C 1.47143 * 120.98541 * 180.02562 * 10 8 7 29 29 N 1.31853 * 120.76255 * 359.43346 * 6 5 4 30 30 C 1.31891 * 121.72603 * 0.27958 * 29 6 5 31 31 H 1.08999 * 109.47107 * 59.99932 * 1 2 3 32 32 H 1.08997 * 109.47177 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46901 * 300.00159 * 1 2 3 34 34 H 1.08995 * 109.47277 * 240.00152 * 2 1 3 35 35 H 1.08999 * 109.47107 * 120.00068 * 2 1 3 36 36 H 1.08000 * 120.78863 * 0.02562 * 4 3 2 37 37 H 1.07998 * 120.41564 * 180.28359 * 5 4 3 38 38 H 1.08998 * 109.47129 * 4.71886 * 7 6 5 39 39 H 1.09002 * 109.46830 * 244.72750 * 7 6 5 40 40 H 1.09001 * 109.68055 * 110.82949 * 11 10 8 41 41 H 1.08997 * 109.70946 * 350.29704 * 11 10 8 42 42 H 1.08999 * 109.51038 * 187.77430 * 12 11 10 43 43 H 1.09003 * 109.51214 * 67.62197 * 12 11 10 44 44 H 1.09002 * 109.47153 * 299.99641 * 18 16 14 45 45 H 1.09001 * 109.46832 * 179.97438 * 18 16 14 46 46 H 1.09004 * 109.47261 * 59.99813 * 18 16 14 47 47 H 0.97000 * 120.00117 * 334.99772 * 19 16 14 48 48 H 0.96990 * 120.00689 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.68370 * 9.71996 * 28 10 8 50 50 H 1.09004 * 109.68539 * 249.16877 * 28 10 8 51 51 H 1.07995 * 119.61564 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2659 2.0829 -1.1959 5 6 2.7220 3.3912 -1.1475 6 6 2.9382 3.9841 0.0823 7 6 3.4400 5.4036 0.1468 8 6 2.4987 6.2317 0.9830 9 8 1.5167 5.7198 1.4774 10 7 2.7480 7.5413 1.1814 11 6 3.9327 8.1847 0.5913 12 6 4.6695 8.9484 1.6975 13 8 3.7474 9.8101 2.3690 14 6 2.6826 9.1246 3.0326 15 1 3.0969 8.4172 3.7510 16 6 1.7998 10.1378 3.7639 17 1 1.0415 9.6090 4.3413 18 6 2.6627 10.9802 4.7055 19 7 1.1472 11.0123 2.7862 20 6 -0.0328 11.6312 3.1015 21 1 -0.4828 11.4745 4.0707 22 6 -0.6509 12.4601 2.1753 23 7 -0.1029 12.6508 0.9939 24 14 -2.2610 13.3039 2.6051 25 1 -2.0619 14.1761 3.7904 26 1 -2.7111 14.1273 1.4541 27 1 -3.2905 12.2788 2.9123 28 6 1.8439 8.3699 1.9943 29 7 2.7052 3.3239 1.1996 30 6 2.2656 2.0804 1.1916 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0918 1.5927 -2.1423 37 1 2.9101 3.9387 -2.0592 38 1 3.4908 5.8171 -0.8604 39 1 4.4331 5.4178 0.5959 40 1 3.6226 8.8786 -0.1901 41 1 4.5907 7.4257 0.1682 42 1 5.4699 9.5436 1.2580 43 1 5.0910 8.2398 2.4105 44 1 3.1482 10.3296 5.4330 45 1 2.0338 11.7023 5.2262 46 1 3.4210 11.5090 4.1280 47 1 1.5511 11.1528 1.9155 48 1 -0.5349 13.2297 0.3466 49 1 1.1184 7.7333 2.5009 50 1 1.3237 9.0825 1.3541 51 1 2.0865 1.5717 2.1272 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734180931.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:36 Heat of formation + Delta-G solvation = -55.561430 kcal Electronic energy + Delta-G solvation = -30770.941213 eV Core-core repulsion = 26669.685108 eV Total energy + Delta-G solvation = -4101.256104 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69730 -40.97547 -39.48396 -37.08992 -35.89827 -35.71471 -34.17245 -33.32981 -32.44487 -31.53035 -30.14438 -29.43460 -28.07233 -25.89238 -25.09076 -24.74110 -24.37839 -23.36782 -22.01704 -21.21623 -20.19292 -19.31887 -18.40875 -17.73148 -17.60655 -17.33959 -16.79279 -16.58175 -16.27310 -16.15836 -15.91943 -15.79042 -15.27967 -15.08808 -14.84748 -14.72169 -14.57175 -14.39225 -14.23107 -13.97392 -13.87163 -13.50206 -13.46305 -13.09489 -13.07069 -12.87833 -12.82450 -12.72866 -12.51469 -12.46715 -12.22508 -12.18323 -11.84764 -11.77451 -11.68407 -11.49593 -11.08128 -10.93482 -10.82540 -10.66989 -10.26002 -9.71633 -9.54132 -8.95094 -7.90158 -5.17229 0.13520 0.41905 1.46829 1.49605 1.55148 1.62685 1.87105 2.57582 2.81770 2.85195 3.25983 3.43506 3.58412 3.73117 3.76335 3.85369 3.94916 3.99517 4.03301 4.06003 4.12165 4.21346 4.29178 4.31429 4.38315 4.43661 4.47881 4.50579 4.52780 4.62141 4.64795 4.76576 4.81414 4.83481 4.88974 4.94470 5.04311 5.04479 5.06342 5.10885 5.19621 5.21658 5.34464 5.37176 5.42786 5.53139 5.61343 5.81936 6.28309 6.33064 6.39030 7.13130 7.16133 7.38453 8.13805 8.39923 9.32891 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.002360 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.506427 B =11862.639409 C =12910.430358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.081 4.081 5 C -0.163 4.163 6 C 0.109 3.891 7 C -0.081 4.081 8 C 0.513 3.487 9 O -0.576 6.576 10 N -0.616 5.616 11 C 0.068 3.932 12 C 0.039 3.961 13 O -0.384 6.384 14 C 0.095 3.905 15 H 0.072 0.928 16 C 0.172 3.828 17 H 0.054 0.946 18 C -0.146 4.146 19 N -0.725 5.725 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.075 4.075 23 N -0.966 5.966 24 Si 0.968 3.032 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.282 1.282 28 C 0.099 3.901 29 N -0.493 5.493 30 C 0.080 3.920 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.135 0.865 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.048 0.952 47 H 0.377 0.623 48 H 0.249 0.751 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.783 -24.728 -6.178 28.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.139 4.139 4 C -0.106 4.106 5 C -0.182 4.182 6 C -0.029 4.029 7 C -0.120 4.120 8 C 0.303 3.697 9 O -0.455 6.455 10 N -0.350 5.350 11 C -0.053 4.053 12 C -0.037 4.037 13 O -0.302 6.302 14 C 0.036 3.964 15 H 0.090 0.910 16 C 0.063 3.937 17 H 0.072 0.928 18 C -0.206 4.206 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.091 0.909 22 C -0.267 4.267 23 N -0.617 5.617 24 Si 0.798 3.202 25 H -0.205 1.205 26 H -0.223 1.223 27 H -0.209 1.209 28 C -0.025 4.025 29 N -0.202 5.202 30 C -0.077 4.077 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.161 0.839 39 H 0.153 0.847 40 H 0.093 0.907 41 H 0.154 0.846 42 H 0.149 0.851 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.210 0.790 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 13.284 -24.334 -5.022 28.175 hybrid contribution -1.367 0.400 -0.702 1.588 sum 11.917 -23.934 -5.723 27.342 Atomic orbital electron populations 1.21761 0.94699 1.02599 1.01477 1.20511 0.95944 0.90353 1.04445 1.21220 0.99772 0.99056 0.93860 1.21829 0.95543 0.94113 0.99147 1.22262 1.00542 0.96616 0.98815 1.20882 0.97113 0.95534 0.89339 1.20724 0.99501 0.88884 1.02929 1.21094 0.86442 0.81387 0.80815 1.90702 1.31354 1.71689 1.51710 1.48308 1.26490 1.08650 1.51506 1.22762 0.86675 0.99050 0.96849 1.23249 0.91875 0.94584 0.94030 1.88057 1.38324 1.34053 1.69813 1.22548 0.87740 0.93438 0.92680 0.91009 1.20497 0.92351 0.90434 0.90432 0.92769 1.22133 0.99528 1.00055 0.98850 1.42479 1.24313 1.54389 1.15423 1.19572 0.98476 1.19987 0.98814 0.90881 1.25472 1.02458 1.02304 0.96482 1.69809 1.41677 1.43238 1.07005 0.85293 0.80146 0.78224 0.76585 1.20464 1.22251 1.20865 1.21949 0.92935 0.93347 0.94279 1.67362 1.11585 1.08896 1.32348 1.22870 0.96019 0.90072 0.98750 0.93034 0.90525 0.93963 0.88978 0.89829 0.82013 0.81920 0.83877 0.84688 0.90685 0.84616 0.85147 0.91649 0.91587 0.94380 0.93333 0.78985 0.94223 0.91175 0.92364 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.89 71.98 0.71 -1.10 16 2 C -0.07 -0.83 6.09 29.85 0.18 -0.65 16 3 C -0.14 -2.38 5.15 -19.77 -0.10 -2.48 16 4 C -0.08 -1.25 9.86 22.47 0.22 -1.03 16 5 C -0.16 -2.81 9.71 22.36 0.22 -2.59 16 6 C 0.11 2.54 5.76 42.55 0.25 2.78 16 7 C -0.08 -1.53 4.47 29.10 0.13 -1.40 16 8 C 0.51 15.60 7.64 87.66 0.67 16.27 16 9 O -0.58 -23.60 14.80 -3.02 -0.04 -23.64 16 10 N -0.62 -18.17 3.02 -817.30 -2.47 -20.64 16 11 C 0.07 1.38 6.54 86.35 0.56 1.95 16 12 C 0.04 0.84 6.98 72.08 0.50 1.35 16 13 O -0.38 -12.64 9.24 -148.98 -1.38 -14.01 16 14 C 0.10 3.34 2.58 30.70 0.08 3.42 16 15 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 16 C 0.17 7.10 2.81 44.99 0.13 7.22 16 17 H 0.05 2.27 8.08 -2.39 -0.02 2.25 16 18 C -0.15 -5.44 9.29 71.98 0.67 -4.77 16 19 N -0.72 -37.33 4.24 -322.94 -1.37 -38.70 16 20 C -0.24 -13.41 9.93 84.04 0.83 -12.58 16 21 H 0.07 4.00 7.83 -2.91 -0.02 3.97 16 22 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 23 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 24 Si 0.97 47.52 29.55 68.60 2.03 49.55 16 25 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 27 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 28 C 0.10 3.75 5.82 86.37 0.50 4.25 16 29 N -0.49 -13.89 9.23 -183.90 -1.70 -15.58 16 30 C 0.08 1.85 10.86 84.67 0.92 2.77 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 0.69 8.10 -2.39 -0.02 0.67 16 35 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 36 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.16 1.71 7.95 -2.91 -0.02 1.69 16 38 H 0.14 1.63 7.74 -2.39 -0.02 1.62 16 39 H 0.14 1.83 7.66 -2.39 -0.02 1.81 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.14 1.41 6.06 -2.39 -0.01 1.39 16 42 H 0.13 2.05 8.14 -2.39 -0.02 2.04 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.05 1.88 7.56 -2.38 -0.02 1.86 16 47 H 0.38 21.05 7.07 -92.71 -0.66 20.39 16 48 H 0.25 15.10 8.31 -92.72 -0.77 14.33 16 49 H 0.07 2.96 7.08 -2.39 -0.02 2.95 16 50 H 0.06 2.66 6.92 -2.39 -0.02 2.64 16 51 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -81.78 411.20 2.56 -79.22 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: 0.27 Total: 34.19 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 6.94 Total: 9.48 kcal Atomic # 7 Polarization: -129.54 SS G_CDS: -5.25 Total: -134.79 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -1.42 Total: -37.66 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -81.78 2.56 -79.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734180931.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.660 kcal (2) G-P(sol) polarization free energy of solvation -81.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds