Wall clock time and date at job start Wed Apr 1 2020 04:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47477 * 2 1 4 4 C 1.38355 * 120.27110 * 89.99656 * 3 2 1 5 5 N 1.31879 * 121.18566 * 180.02562 * 4 3 2 6 6 C 1.32236 * 121.79837 * 0.02562 * 5 4 3 7 7 O 1.35432 * 119.79644 * 179.97438 * 6 5 4 8 8 C 1.40279 * 120.40502 * 359.97438 * 6 5 4 9 9 C 1.47523 * 120.60059 * 179.97438 * 8 6 5 10 10 O 1.21588 * 120.00124 * 39.51974 * 9 8 6 11 11 N 1.34781 * 119.99830 * 219.52827 * 9 8 6 12 12 C 1.46923 * 120.63142 * 4.56689 * 11 9 8 13 13 C 1.53191 * 108.77223 * 126.41559 * 12 11 9 14 14 C 1.53045 * 109.31195 * 54.64127 * 13 12 11 15 15 C 1.53036 * 109.53557 * 298.63432 * 14 13 12 16 16 C 1.46922 * 120.63052 * 184.60240 * 11 9 8 17 17 H 1.09002 * 109.59082 * 113.64739 * 16 11 9 18 18 C 1.53007 * 109.58371 * 353.36513 * 16 11 9 19 19 H 1.08996 * 109.46785 * 55.17929 * 18 16 11 20 20 C 1.53004 * 109.46849 * 175.17524 * 18 16 11 21 21 N 1.46499 * 109.47162 * 295.17380 * 18 16 11 22 22 C 1.36936 * 119.99442 * 155.00085 * 21 18 16 23 23 H 1.08001 * 120.00310 * 0.02562 * 22 21 18 24 24 C 1.38812 * 119.99747 * 180.02562 * 22 21 18 25 25 N 1.31620 * 120.00193 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00009 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46923 * 60.00313 * 26 24 22 28 28 H 1.48505 * 109.47056 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47218 * 300.00075 * 26 24 22 30 30 C 1.38339 * 120.26873 * 270.28294 * 3 2 1 31 31 H 1.09004 * 109.46502 * 60.00034 * 1 2 3 32 32 H 1.08993 * 109.47297 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46989 * 300.00255 * 1 2 3 34 34 H 1.08999 * 109.46989 * 239.99745 * 2 1 3 35 35 H 1.09000 * 109.47218 * 119.99996 * 2 1 3 36 36 H 1.07999 * 119.40486 * 0.04849 * 4 3 2 37 37 H 0.96698 * 114.00286 * 270.01652 * 7 6 5 38 38 H 1.09001 * 109.59571 * 246.20644 * 12 11 9 39 39 H 1.09000 * 109.58726 * 6.63844 * 12 11 9 40 40 H 1.09006 * 109.49806 * 174.58748 * 13 12 11 41 41 H 1.08998 * 109.50444 * 294.65562 * 13 12 11 42 42 H 1.08999 * 109.46306 * 58.64846 * 14 13 12 43 43 H 1.08997 * 109.46182 * 178.62476 * 14 13 12 44 44 H 1.09009 * 109.49779 * 301.41177 * 15 14 13 45 45 H 1.09003 * 109.50116 * 181.31974 * 15 14 13 46 46 H 1.09001 * 109.47630 * 305.90384 * 20 18 16 47 47 H 1.08999 * 109.46850 * 185.89937 * 20 18 16 48 48 H 1.09010 * 109.47001 * 65.90213 * 20 18 16 49 49 H 0.96991 * 120.00254 * 335.00386 * 21 18 16 50 50 H 0.96996 * 120.00332 * 179.97438 * 25 24 22 51 51 H 1.08000 * 120.83001 * 359.97092 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2649 2.0783 1.1949 5 7 2.7041 3.3217 1.2160 6 6 2.9414 3.9957 0.1033 7 8 3.3914 5.2713 0.1722 8 6 2.7300 3.3977 -1.1479 9 6 2.9928 4.1459 -2.3918 10 8 3.9609 4.8776 -2.4682 11 7 2.1596 4.0186 -3.4436 12 6 0.9327 3.2179 -3.3340 13 6 -0.2583 4.0792 -3.7662 14 6 0.0038 4.6393 -5.1661 15 6 1.2535 5.5221 -5.1385 16 6 2.4616 4.6773 -4.7217 17 1 2.6629 3.9233 -5.4828 18 6 3.6862 5.5796 -4.5570 19 1 4.5187 4.9944 -4.1664 20 6 4.0709 6.1702 -5.9151 21 7 3.3715 6.6645 -3.6242 22 6 4.3759 7.2791 -2.9251 23 1 5.3999 6.9643 -3.0617 24 6 4.0777 8.3067 -2.0408 25 7 2.8298 8.6906 -1.8746 26 14 5.4477 9.1447 -1.0865 27 1 6.4100 9.7574 -2.0372 28 1 4.8707 10.2014 -0.2171 29 1 6.1514 8.1420 -0.2472 30 6 2.2594 2.0801 -1.1948 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0838 1.5640 2.1271 37 1 2.6890 5.9356 0.1928 38 1 1.0067 2.3449 -3.9825 39 1 0.7962 2.8979 -2.3010 40 1 -1.1617 3.4694 -3.7816 41 1 -0.3866 4.9019 -3.0628 42 1 0.1562 3.8160 -5.8640 43 1 -0.8528 5.2326 -5.4861 44 1 1.1113 6.3317 -4.4224 45 1 1.4262 5.9395 -6.1305 46 1 4.2030 5.3646 -6.6374 47 1 5.0024 6.7277 -5.8180 48 1 3.2810 6.8391 -6.2572 49 1 2.4519 6.9473 -3.5017 50 1 2.6214 9.4084 -1.2564 51 1 2.0814 1.5894 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752160159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:34 Heat of formation + Delta-G solvation = 16.363374 kcal Electronic energy + Delta-G solvation = -33624.311338 eV Core-core repulsion = 29526.174127 eV Total energy + Delta-G solvation = -4098.137211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.88525 -39.58155 -37.16242 -36.50785 -35.31319 -34.23645 -32.86458 -32.16041 -31.44060 -29.60024 -29.04676 -28.00712 -25.54683 -24.25914 -23.93434 -23.68471 -23.14321 -21.84238 -20.64911 -19.92113 -18.69069 -18.19020 -17.05686 -16.91005 -16.41664 -15.87350 -15.41751 -14.82020 -14.54694 -14.44195 -14.20325 -14.17117 -14.01590 -13.89780 -13.53332 -13.41309 -13.25361 -12.89825 -12.70104 -12.50886 -12.19635 -12.17417 -12.06371 -11.83147 -11.72536 -11.37188 -11.28993 -11.10155 -11.06394 -10.89367 -10.63687 -10.58289 -10.48220 -10.39287 -10.07619 -9.79227 -9.54031 -9.33806 -9.30262 -8.73830 -8.51588 -8.20476 -7.88525 -6.51920 -5.44410 -2.65685 0.89367 1.17437 3.28665 3.38170 3.65162 3.68087 3.74524 3.82842 4.03670 4.52758 4.61814 4.77272 4.79313 4.88573 4.91686 4.96249 5.04670 5.11332 5.15065 5.26766 5.33158 5.41521 5.47909 5.57836 5.62774 5.67252 5.67499 5.72605 5.78840 5.83714 5.91806 5.95493 5.96502 6.02101 6.08527 6.14989 6.17857 6.26698 6.30500 6.44961 6.50934 6.55475 6.60775 6.90601 7.02785 7.08988 7.40625 7.84749 8.00858 8.06228 8.16237 8.73421 9.00768 9.86764 10.40791 10.77970 11.79730 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.005256 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.189770 B = 5325.474940 C = 7271.044601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.074 4.074 3 C -0.165 4.165 4 C 0.137 3.863 5 N -0.508 5.508 6 C 0.363 3.637 7 O -0.450 6.450 8 C -0.181 4.181 9 C 0.533 3.467 10 O -0.416 6.416 11 N -0.608 5.608 12 C 0.103 3.897 13 C -0.135 4.135 14 C -0.116 4.116 15 C -0.133 4.133 16 C 0.149 3.851 17 H 0.061 0.939 18 C 0.171 3.829 19 H 0.078 0.922 20 C -0.169 4.169 21 N -0.700 5.700 22 C -0.166 4.166 23 H 0.062 0.938 24 C -0.025 4.025 25 N -0.952 5.952 26 Si 0.895 3.105 27 H -0.295 1.295 28 H -0.298 1.298 29 H -0.289 1.289 30 C -0.040 4.040 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.156 0.844 37 H 0.409 0.591 38 H 0.059 0.941 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.031 0.969 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.377 0.623 50 H 0.246 0.754 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.747 -19.388 -2.063 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.167 4.167 4 C -0.022 4.022 5 N -0.226 5.226 6 C 0.183 3.817 7 O -0.258 6.258 8 C -0.188 4.188 9 C 0.317 3.683 10 O -0.284 6.284 11 N -0.345 5.345 12 C -0.021 4.021 13 C -0.173 4.173 14 C -0.154 4.154 15 C -0.171 4.171 16 C 0.045 3.955 17 H 0.079 0.921 18 C 0.060 3.940 19 H 0.096 0.904 20 C -0.230 4.230 21 N -0.342 5.342 22 C -0.298 4.298 23 H 0.080 0.920 24 C -0.218 4.218 25 N -0.605 5.605 26 Si 0.728 3.272 27 H -0.222 1.222 28 H -0.224 1.224 29 H -0.216 1.216 30 C -0.066 4.066 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.173 0.827 37 H 0.270 0.730 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.213 0.787 50 H 0.056 0.944 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.264 -18.641 -1.238 20.429 hybrid contribution -0.304 0.503 -0.075 0.592 sum -8.568 -18.139 -1.312 20.103 Atomic orbital electron populations 1.21780 0.94650 1.01768 1.02385 1.20405 0.96120 0.91569 1.03150 1.20747 1.04062 0.98060 0.93860 1.22488 0.93006 0.89197 0.97465 1.67344 1.13732 1.09640 1.31919 1.19327 0.88430 0.87753 0.86161 1.84823 1.34830 1.11039 1.95078 1.21415 1.04858 0.96578 0.95977 1.17846 0.85523 0.82655 0.82274 1.91169 1.27166 1.30700 1.79338 1.47730 1.22576 1.52094 1.12128 1.21926 0.84878 0.93559 1.01699 1.21917 0.97239 1.00157 0.98025 1.21498 0.98380 0.99228 0.96263 1.21988 0.93872 0.98921 1.02334 1.21593 0.96457 0.93934 0.83509 0.92064 1.20661 0.94234 0.89982 0.89079 0.90444 1.22585 1.01688 0.99799 0.98901 1.42393 1.07065 1.37717 1.47049 1.18997 0.88556 1.08245 1.14014 0.92025 1.24431 0.95627 1.00619 1.01096 1.69633 1.16103 1.32984 1.41813 0.86407 0.81836 0.78865 0.80071 1.22236 1.22417 1.21578 1.21657 0.93629 0.92733 0.98562 0.92496 0.92306 0.92440 0.90869 0.90691 0.82675 0.73030 0.92232 0.89837 0.91568 0.91260 0.92457 0.92166 0.90142 0.91114 0.94977 0.92890 0.93539 0.78713 0.94412 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.90 37.16 0.37 -0.57 16 2 C -0.07 -0.53 6.08 -27.88 -0.17 -0.70 16 3 C -0.17 -1.77 5.14 -104.54 -0.54 -2.31 16 4 C 0.14 1.70 10.84 -17.49 -0.19 1.51 16 5 N -0.51 -8.45 10.37 -12.98 -0.13 -8.59 16 6 C 0.36 6.74 7.74 -16.61 -0.13 6.61 16 7 O -0.45 -9.75 12.34 -33.75 -0.42 -10.17 16 8 C -0.18 -3.03 5.20 -104.69 -0.54 -3.57 16 9 C 0.53 10.10 6.85 -12.47 -0.09 10.01 16 10 O -0.42 -9.79 8.81 -10.47 -0.09 -9.88 16 11 N -0.61 -9.55 2.97 -166.44 -0.49 -10.04 16 12 C 0.10 1.21 4.90 -3.71 -0.02 1.19 16 13 C -0.14 -1.55 6.08 -26.61 -0.16 -1.71 16 14 C -0.12 -1.36 5.88 -26.69 -0.16 -1.52 16 15 C -0.13 -2.00 4.86 -26.61 -0.13 -2.13 16 16 C 0.15 2.40 2.73 -67.60 -0.18 2.21 16 17 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 18 C 0.17 3.45 1.88 -67.93 -0.13 3.32 16 19 H 0.08 1.76 5.98 -52.02 -0.31 1.45 16 20 C -0.17 -3.11 9.12 37.16 0.34 -2.77 16 21 N -0.70 -17.17 3.55 -53.42 -0.19 -17.36 16 22 C -0.17 -4.70 7.93 -15.06 -0.12 -4.82 16 23 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.03 -0.74 5.50 -17.43 -0.10 -0.84 16 25 N -0.95 -28.57 13.06 55.49 0.72 -27.85 16 26 Si 0.89 24.05 29.55 -169.99 -5.02 19.03 16 27 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 28 H -0.30 -8.06 7.11 56.52 0.40 -7.65 16 29 H -0.29 -7.94 7.11 56.52 0.40 -7.54 16 30 C -0.04 -0.49 7.15 -38.89 -0.28 -0.77 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.41 8.19 9.06 45.56 0.41 8.60 16 38 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.08 0.95 4.58 -51.93 -0.24 0.71 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.08 1.50 6.08 -51.92 -0.32 1.19 16 45 H 0.07 1.02 7.02 -51.93 -0.36 0.66 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.85 7.02 -51.92 -0.36 0.48 16 49 H 0.38 9.80 5.67 -40.82 -0.23 9.57 16 50 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 51 H 0.14 1.42 6.49 -52.49 -0.34 1.08 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -33.88 391.58 -9.16 -43.04 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -7.21 Total: 12.77 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.22 Total: 3.14 kcal Atomic # 7 Polarization: -63.74 SS G_CDS: -0.09 Total: -63.83 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.51 Total: -20.04 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -5.02 Total: 19.03 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.88 -9.16 -43.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752160159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.402 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds