Wall clock time and date at job start Wed Apr 1 2020 04:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47477 * 2 1 4 4 C 1.38355 * 120.27110 * 89.99656 * 3 2 1 5 5 N 1.31879 * 121.18566 * 180.02562 * 4 3 2 6 6 C 1.32236 * 121.79837 * 0.02562 * 5 4 3 7 7 O 1.35432 * 119.79644 * 179.97438 * 6 5 4 8 8 C 1.40279 * 120.40502 * 359.97438 * 6 5 4 9 9 C 1.47523 * 120.60059 * 179.97438 * 8 6 5 10 10 O 1.21588 * 120.00124 * 39.51974 * 9 8 6 11 11 N 1.34781 * 119.99830 * 219.52827 * 9 8 6 12 12 C 1.46923 * 120.63142 * 4.56689 * 11 9 8 13 13 C 1.53191 * 108.77223 * 126.41559 * 12 11 9 14 14 C 1.53045 * 109.31195 * 54.64127 * 13 12 11 15 15 C 1.53036 * 109.53557 * 298.63432 * 14 13 12 16 16 C 1.46922 * 120.63052 * 184.60240 * 11 9 8 17 17 H 1.09002 * 109.59082 * 113.64739 * 16 11 9 18 18 C 1.53007 * 109.58371 * 353.36513 * 16 11 9 19 19 H 1.08996 * 109.46785 * 55.17929 * 18 16 11 20 20 C 1.53004 * 109.46849 * 175.17524 * 18 16 11 21 21 N 1.46499 * 109.47162 * 295.17380 * 18 16 11 22 22 C 1.36936 * 119.99442 * 155.00085 * 21 18 16 23 23 H 1.08001 * 120.00310 * 0.02562 * 22 21 18 24 24 C 1.38812 * 119.99747 * 180.02562 * 22 21 18 25 25 N 1.31620 * 120.00193 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00009 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46923 * 60.00313 * 26 24 22 28 28 H 1.48505 * 109.47056 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47218 * 300.00075 * 26 24 22 30 30 C 1.38339 * 120.26873 * 270.28294 * 3 2 1 31 31 H 1.09004 * 109.46502 * 60.00034 * 1 2 3 32 32 H 1.08993 * 109.47297 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46989 * 300.00255 * 1 2 3 34 34 H 1.08999 * 109.46989 * 239.99745 * 2 1 3 35 35 H 1.09000 * 109.47218 * 119.99996 * 2 1 3 36 36 H 1.07999 * 119.40486 * 0.04849 * 4 3 2 37 37 H 0.96698 * 114.00286 * 270.01652 * 7 6 5 38 38 H 1.09001 * 109.59571 * 246.20644 * 12 11 9 39 39 H 1.09000 * 109.58726 * 6.63844 * 12 11 9 40 40 H 1.09006 * 109.49806 * 174.58748 * 13 12 11 41 41 H 1.08998 * 109.50444 * 294.65562 * 13 12 11 42 42 H 1.08999 * 109.46306 * 58.64846 * 14 13 12 43 43 H 1.08997 * 109.46182 * 178.62476 * 14 13 12 44 44 H 1.09009 * 109.49779 * 301.41177 * 15 14 13 45 45 H 1.09003 * 109.50116 * 181.31974 * 15 14 13 46 46 H 1.09001 * 109.47630 * 305.90384 * 20 18 16 47 47 H 1.08999 * 109.46850 * 185.89937 * 20 18 16 48 48 H 1.09010 * 109.47001 * 65.90213 * 20 18 16 49 49 H 0.96991 * 120.00254 * 335.00386 * 21 18 16 50 50 H 0.96996 * 120.00332 * 179.97438 * 25 24 22 51 51 H 1.08000 * 120.83001 * 359.97092 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2649 2.0783 1.1949 5 7 2.7041 3.3217 1.2160 6 6 2.9414 3.9957 0.1033 7 8 3.3914 5.2713 0.1722 8 6 2.7300 3.3977 -1.1479 9 6 2.9928 4.1459 -2.3918 10 8 3.9609 4.8776 -2.4682 11 7 2.1596 4.0186 -3.4436 12 6 0.9327 3.2179 -3.3340 13 6 -0.2583 4.0792 -3.7662 14 6 0.0038 4.6393 -5.1661 15 6 1.2535 5.5221 -5.1385 16 6 2.4616 4.6773 -4.7217 17 1 2.6629 3.9233 -5.4828 18 6 3.6862 5.5796 -4.5570 19 1 4.5187 4.9944 -4.1664 20 6 4.0709 6.1702 -5.9151 21 7 3.3715 6.6645 -3.6242 22 6 4.3759 7.2791 -2.9251 23 1 5.3999 6.9643 -3.0617 24 6 4.0777 8.3067 -2.0408 25 7 2.8298 8.6906 -1.8746 26 14 5.4477 9.1447 -1.0865 27 1 6.4100 9.7574 -2.0372 28 1 4.8707 10.2014 -0.2171 29 1 6.1514 8.1420 -0.2472 30 6 2.2594 2.0801 -1.1948 31 1 -0.3632 0.5139 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.0838 1.5640 2.1271 37 1 2.6890 5.9356 0.1928 38 1 1.0067 2.3449 -3.9825 39 1 0.7962 2.8979 -2.3010 40 1 -1.1617 3.4694 -3.7816 41 1 -0.3866 4.9019 -3.0628 42 1 0.1562 3.8160 -5.8640 43 1 -0.8528 5.2326 -5.4861 44 1 1.1113 6.3317 -4.4224 45 1 1.4262 5.9395 -6.1305 46 1 4.2030 5.3646 -6.6374 47 1 5.0024 6.7277 -5.8180 48 1 3.2810 6.8391 -6.2572 49 1 2.4519 6.9473 -3.5017 50 1 2.6214 9.4084 -1.2564 51 1 2.0814 1.5894 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752160159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:33 Heat of formation + Delta-G solvation = -8.748529 kcal Electronic energy + Delta-G solvation = -33625.400272 eV Core-core repulsion = 29526.174127 eV Total energy + Delta-G solvation = -4099.226145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11299 -40.83910 -38.46874 -37.87977 -36.91248 -35.15331 -34.31962 -33.79154 -32.64152 -31.17227 -29.96167 -29.66331 -26.78626 -25.73146 -25.19402 -24.81938 -24.51596 -22.90108 -21.76121 -21.31665 -20.05032 -19.48629 -18.99892 -18.15614 -17.67091 -17.10923 -16.83759 -16.31479 -15.95077 -15.68549 -15.49197 -15.45035 -15.24250 -14.95661 -14.70410 -14.59304 -14.39230 -14.25996 -13.93509 -13.83334 -13.59200 -13.42855 -13.17467 -13.03737 -12.99635 -12.78085 -12.73416 -12.61397 -12.33808 -12.16695 -12.13888 -12.00745 -11.76370 -11.68863 -11.54810 -11.37579 -11.26313 -10.80296 -10.62777 -10.51003 -9.75146 -9.66647 -9.27320 -8.53718 -7.71063 -4.87366 -0.26189 0.09556 1.42023 1.46302 1.52229 1.97412 2.19930 2.57048 2.70560 2.84396 3.48852 3.63379 3.71874 3.78315 3.87338 3.95612 3.97645 4.06037 4.12386 4.23804 4.31313 4.34846 4.38189 4.43947 4.59158 4.60296 4.66713 4.70238 4.79589 4.84826 4.90072 4.92855 4.97249 4.98579 5.04803 5.11122 5.16511 5.22364 5.28644 5.32312 5.39274 5.45541 5.48924 5.56752 5.58247 5.62313 5.72262 5.97688 6.50868 6.52048 6.69446 6.89750 7.57231 7.66133 8.36281 8.61772 9.53242 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.005256 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.189770 B = 5325.474940 C = 7271.044601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.071 4.071 3 C -0.140 4.140 4 C 0.133 3.867 5 N -0.534 5.534 6 C 0.321 3.679 7 O -0.483 6.483 8 C -0.197 4.197 9 C 0.528 3.472 10 O -0.481 6.481 11 N -0.604 5.604 12 C 0.097 3.903 13 C -0.132 4.132 14 C -0.109 4.109 15 C -0.127 4.127 16 C 0.152 3.848 17 H 0.097 0.903 18 C 0.165 3.835 19 H 0.051 0.949 20 C -0.159 4.159 21 N -0.699 5.699 22 C -0.145 4.145 23 H 0.042 0.958 24 C -0.077 4.077 25 N -0.975 5.975 26 Si 0.940 3.060 27 H -0.290 1.290 28 H -0.298 1.298 29 H -0.303 1.303 30 C -0.029 4.029 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.191 0.809 37 H 0.402 0.598 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.034 0.966 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.034 0.966 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.026 0.974 48 H 0.046 0.954 49 H 0.369 0.631 50 H 0.238 0.762 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.019 -24.113 -3.712 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.142 4.142 4 C -0.026 4.026 5 N -0.253 5.253 6 C 0.143 3.857 7 O -0.290 6.290 8 C -0.203 4.203 9 C 0.314 3.686 10 O -0.353 6.353 11 N -0.339 5.339 12 C -0.024 4.024 13 C -0.171 4.171 14 C -0.146 4.146 15 C -0.166 4.166 16 C 0.049 3.951 17 H 0.115 0.885 18 C 0.056 3.944 19 H 0.069 0.931 20 C -0.219 4.219 21 N -0.339 5.339 22 C -0.278 4.278 23 H 0.061 0.939 24 C -0.267 4.267 25 N -0.631 5.631 26 Si 0.775 3.225 27 H -0.217 1.217 28 H -0.225 1.225 29 H -0.231 1.231 30 C -0.055 4.055 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.208 0.792 37 H 0.260 0.740 38 H 0.119 0.881 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.052 0.948 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.047 0.953 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.559 -23.427 -2.937 25.864 hybrid contribution 0.350 1.711 0.444 1.802 sum -10.209 -21.716 -2.492 24.125 Atomic orbital electron populations 1.21785 0.93642 1.02935 1.02174 1.20545 0.96725 0.88596 1.05024 1.21205 1.01005 0.99580 0.92393 1.23220 0.91549 0.87891 0.99891 1.67269 1.14740 1.11654 1.31601 1.19528 0.91558 0.86908 0.87701 1.84797 1.35784 1.12927 1.95475 1.21278 1.06608 0.98370 0.94091 1.18282 0.84960 0.82030 0.83350 1.91125 1.29903 1.33737 1.80582 1.47830 1.23269 1.51736 1.11112 1.22277 0.82849 0.94198 1.03094 1.21916 0.98629 0.99544 0.96965 1.21479 0.96532 0.99533 0.97085 1.21908 0.95340 0.98155 1.01175 1.21551 0.94861 0.94147 0.84579 0.88484 1.20755 0.95761 0.89295 0.88569 0.93119 1.22417 1.00221 1.00689 0.98597 1.42408 1.05649 1.38502 1.47354 1.19008 0.88540 1.07121 1.13167 0.93948 1.24832 0.96953 1.02151 1.02725 1.69733 1.16966 1.33623 1.42754 0.85656 0.80187 0.77672 0.79003 1.21726 1.22501 1.23144 1.21969 0.92149 0.90707 1.00677 0.92490 0.90486 0.93005 0.89071 0.88895 0.79182 0.73954 0.88065 0.89453 0.87897 0.94751 0.89348 0.91385 0.94716 0.90367 0.91025 0.95480 0.93522 0.79700 0.95255 0.81035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.90 71.98 0.71 -0.43 16 2 C -0.07 -0.65 6.08 29.85 0.18 -0.46 16 3 C -0.14 -2.53 5.14 -19.81 -0.10 -2.63 16 4 C 0.13 3.03 10.84 84.71 0.92 3.95 16 5 N -0.53 -18.18 10.37 -308.00 -3.19 -21.37 16 6 C 0.32 12.65 7.74 85.13 0.66 13.31 16 7 O -0.48 -23.16 12.34 -72.21 -0.89 -24.05 16 8 C -0.20 -6.66 5.20 -19.91 -0.10 -6.76 16 9 C 0.53 20.59 6.85 86.69 0.59 21.19 16 10 O -0.48 -24.09 8.81 11.08 0.10 -23.99 16 11 N -0.60 -18.25 2.97 -798.76 -2.37 -20.62 16 12 C 0.10 1.92 4.90 86.36 0.42 2.35 16 13 C -0.13 -2.60 6.08 30.67 0.19 -2.42 16 14 C -0.11 -2.16 5.88 30.62 0.18 -1.98 16 15 C -0.13 -3.66 4.86 30.67 0.15 -3.51 16 16 C 0.15 4.67 2.73 44.98 0.12 4.79 16 17 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 18 C 0.16 6.80 1.88 45.00 0.08 6.89 16 19 H 0.05 2.41 5.98 -3.87 -0.02 2.39 16 20 C -0.16 -5.79 9.12 71.98 0.66 -5.14 16 21 N -0.70 -36.13 3.55 -322.93 -1.15 -37.28 16 22 C -0.15 -8.70 7.93 84.03 0.67 -8.03 16 23 H 0.04 2.67 7.83 -2.91 -0.02 2.65 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 25 N -0.97 -61.82 13.06 21.65 0.28 -61.54 16 26 Si 0.94 52.34 29.55 68.60 2.03 54.36 16 27 H -0.29 -15.67 7.11 99.48 0.71 -14.96 16 28 H -0.30 -16.50 7.11 99.48 0.71 -15.79 16 29 H -0.30 -17.39 7.11 99.48 0.71 -16.68 16 30 C -0.03 -0.65 7.15 22.72 0.16 -0.49 16 31 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 35 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 36 H 0.19 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.40 18.47 9.06 -74.06 -0.67 17.80 16 38 H 0.10 1.27 8.12 -2.39 -0.02 1.25 16 39 H 0.09 1.68 4.58 -2.39 -0.01 1.67 16 40 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.03 1.33 6.08 -2.38 -0.01 1.31 16 45 H 0.08 2.11 7.02 -2.39 -0.02 2.09 16 46 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.05 1.68 7.02 -2.38 -0.02 1.66 16 49 H 0.37 20.32 5.67 -92.71 -0.53 19.79 16 50 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 51 H 0.17 2.64 6.49 -2.91 -0.02 2.62 16 Total: -1.00 -83.20 391.58 0.52 -82.69 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.25 Total: 35.47 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 5.96 Total: 16.34 kcal Atomic # 7 Polarization: -134.38 SS G_CDS: -6.43 Total: -140.81 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.79 Total: -48.05 kcal Atomic # 14 Polarization: 52.34 SS G_CDS: 2.03 Total: 54.36 kcal Total: -83.20 0.52 -82.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752160159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.937 kcal (2) G-P(sol) polarization free energy of solvation -83.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds