Wall clock time and date at job start Wed Apr 1 2020 04:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47095 * 2 1 4 4 C 1.38354 * 120.27085 * 270.02098 * 3 2 1 5 5 N 1.31877 * 121.18919 * 179.97438 * 4 3 2 6 6 C 1.32231 * 121.79795 * 0.02562 * 5 4 3 7 7 O 1.35434 * 119.80306 * 180.02562 * 6 5 4 8 8 C 1.40279 * 120.40313 * 359.97438 * 6 5 4 9 9 C 1.47519 * 120.59713 * 180.27785 * 8 6 5 10 10 O 1.21592 * 120.00195 * 305.75527 * 9 8 6 11 11 N 1.34776 * 120.00148 * 125.76469 * 9 8 6 12 12 C 1.46930 * 120.63015 * 3.59274 * 11 9 8 13 13 C 1.53190 * 108.77819 * 233.58906 * 12 11 9 14 14 C 1.53045 * 109.31305 * 305.36493 * 13 12 11 15 15 C 1.53039 * 109.53650 * 61.36564 * 14 13 12 16 16 C 1.46925 * 120.63494 * 183.31854 * 11 9 8 17 17 H 1.09004 * 109.59177 * 246.20015 * 16 11 9 18 18 C 1.53000 * 109.58537 * 6.62516 * 16 11 9 19 19 H 1.09004 * 109.47218 * 46.52896 * 18 16 11 20 20 C 1.53000 * 109.47446 * 166.53556 * 18 16 11 21 21 N 1.46504 * 109.47099 * 286.53159 * 18 16 11 22 22 C 1.36934 * 119.99984 * 166.91902 * 21 18 16 23 23 H 1.07994 * 120.00109 * 0.02562 * 22 21 18 24 24 C 1.38818 * 120.00028 * 180.02562 * 22 21 18 25 25 N 1.31624 * 119.99613 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00082 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47187 * 90.00154 * 26 24 22 28 28 H 1.48506 * 109.46928 * 210.00073 * 26 24 22 29 29 H 1.48494 * 109.47243 * 329.99852 * 26 24 22 30 30 C 1.38339 * 120.27340 * 90.00330 * 3 2 1 31 31 H 1.09009 * 109.46855 * 300.00063 * 1 2 3 32 32 H 1.08999 * 109.47078 * 60.00039 * 1 2 3 33 33 H 1.09001 * 109.46906 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46816 * 239.99404 * 2 1 3 35 35 H 1.08999 * 109.47078 * 119.99961 * 2 1 3 36 36 H 1.08007 * 119.40838 * 0.02562 * 4 3 2 37 37 H 0.96696 * 113.99684 * 269.98042 * 7 6 5 38 38 H 1.09000 * 109.58602 * 353.38031 * 12 11 9 39 39 H 1.09001 * 109.58734 * 113.66011 * 12 11 9 40 40 H 1.09002 * 109.49573 * 65.31518 * 13 12 11 41 41 H 1.08997 * 109.49953 * 185.41156 * 13 12 11 42 42 H 1.09003 * 109.45602 * 181.38482 * 14 13 12 43 43 H 1.08997 * 109.45815 * 301.35948 * 14 13 12 44 44 H 1.09004 * 109.49767 * 58.58227 * 15 14 13 45 45 H 1.09003 * 109.49782 * 178.64830 * 15 14 13 46 46 H 1.08999 * 109.47131 * 59.99832 * 20 18 16 47 47 H 1.08998 * 109.47149 * 179.97438 * 20 18 16 48 48 H 1.09006 * 109.46652 * 300.00060 * 20 18 16 49 49 H 0.97003 * 119.99612 * 346.92546 * 21 18 16 50 50 H 0.96999 * 119.99797 * 179.97438 * 25 24 22 51 51 H 1.07995 * 120.82321 * 0.03649 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2644 2.0785 -1.1949 5 7 2.7034 3.3218 -1.2160 6 6 2.9420 3.9955 -0.1035 7 8 3.3919 5.2711 -0.1723 8 6 2.7310 3.3974 1.1477 9 6 2.9900 4.1470 2.3916 10 8 4.0750 4.6643 2.5750 11 7 2.0240 4.2584 3.3248 12 6 0.7353 3.5737 3.1537 13 6 -0.3919 4.6011 3.2970 14 6 -0.2420 5.3340 4.6321 15 6 1.0955 6.0773 4.6606 16 6 2.2416 5.0620 4.5354 17 1 2.2534 4.4105 5.4093 18 6 3.5759 5.8027 4.4263 19 1 3.6544 6.2671 3.4433 20 6 3.6500 6.8823 5.5079 21 7 4.6774 4.8539 4.6073 22 6 5.9575 5.2221 4.2897 23 1 6.1551 6.2121 3.9061 24 6 7.0011 4.3229 4.4607 25 7 6.7603 3.1165 4.9287 26 14 8.7474 4.8255 4.0281 27 1 9.3991 5.4264 5.2195 28 1 9.5138 3.6295 3.5950 29 1 8.7176 5.8201 2.9258 30 6 2.2649 2.0783 1.1947 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.0819 1.5646 -2.1272 37 1 4.3556 5.3477 -0.1928 38 1 0.6917 3.1189 2.1641 39 1 0.6278 2.8016 3.9156 40 1 -0.3354 5.3195 2.4792 41 1 -1.3548 4.0912 3.2680 42 1 -1.0570 6.0486 4.7476 43 1 -0.2735 4.6122 5.4482 44 1 1.1380 6.7818 3.8299 45 1 1.1910 6.6185 5.6019 46 1 3.5716 6.4178 6.4909 47 1 4.6007 7.4096 5.4305 48 1 2.8304 7.5882 5.3733 49 1 4.4999 3.9647 4.9521 50 1 7.4894 2.4880 5.0478 51 1 2.0915 1.5859 2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752160160.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:37 Heat of formation + Delta-G solvation = 8.039141 kcal Electronic energy + Delta-G solvation = -33154.236362 eV Core-core repulsion = 29055.738185 eV Total energy + Delta-G solvation = -4098.498177 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.93443 -39.63363 -37.35438 -36.69562 -35.30975 -34.31913 -32.96626 -32.20670 -31.60142 -29.85024 -29.14286 -27.76140 -25.61828 -24.34762 -24.19887 -23.80169 -22.78629 -21.92644 -20.58549 -19.98586 -19.07476 -18.52437 -17.13869 -16.92326 -16.45265 -15.94513 -15.45388 -15.10665 -14.79915 -14.54407 -14.36936 -14.14579 -13.83891 -13.74818 -13.47924 -13.40383 -13.37832 -13.11264 -12.95739 -12.67991 -12.35164 -12.15663 -12.12303 -11.94123 -11.85275 -11.44126 -11.34298 -11.23650 -11.13709 -10.96613 -10.82230 -10.66625 -10.58828 -10.40508 -10.14448 -9.75754 -9.63873 -9.53626 -9.41606 -8.75432 -8.64418 -8.32196 -8.00503 -6.50762 -5.49908 -2.69903 0.82928 1.11989 3.20835 3.31990 3.56180 3.61018 3.62071 3.63223 3.89798 4.51822 4.57907 4.72172 4.77457 4.78168 4.85946 4.89118 4.94110 5.06095 5.11620 5.20578 5.26835 5.36579 5.42246 5.50516 5.56301 5.62290 5.65777 5.72608 5.77303 5.81423 5.86965 5.91382 5.93435 5.96016 6.00401 6.10185 6.13434 6.13948 6.16463 6.37702 6.42949 6.48500 6.49605 6.82080 6.92648 7.07018 7.39692 7.61211 7.86103 7.94252 7.95254 8.67590 8.90690 9.79442 10.37378 10.72828 11.74703 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.004854 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.591067 B = 5767.437795 C = 7504.408542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.153 4.153 4 C 0.132 3.868 5 N -0.503 5.503 6 C 0.346 3.654 7 O -0.476 6.476 8 C -0.167 4.167 9 C 0.528 3.472 10 O -0.421 6.421 11 N -0.607 5.607 12 C 0.105 3.895 13 C -0.133 4.133 14 C -0.118 4.118 15 C -0.128 4.128 16 C 0.150 3.850 17 H 0.067 0.933 18 C 0.180 3.820 19 H 0.061 0.939 20 C -0.168 4.168 21 N -0.693 5.693 22 C -0.182 4.182 23 H 0.063 0.937 24 C -0.027 4.027 25 N -0.945 5.945 26 Si 0.897 3.103 27 H -0.296 1.296 28 H -0.297 1.297 29 H -0.286 1.286 30 C -0.035 4.035 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.158 0.842 37 H 0.410 0.590 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.054 0.946 48 H 0.037 0.963 49 H 0.377 0.623 50 H 0.247 0.753 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.829 -3.668 -7.429 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.155 4.155 4 C -0.026 4.026 5 N -0.221 5.221 6 C 0.167 3.833 7 O -0.284 6.284 8 C -0.174 4.174 9 C 0.312 3.688 10 O -0.288 6.288 11 N -0.344 5.344 12 C -0.019 4.019 13 C -0.172 4.172 14 C -0.156 4.156 15 C -0.167 4.167 16 C 0.046 3.954 17 H 0.085 0.915 18 C 0.070 3.930 19 H 0.079 0.921 20 C -0.229 4.229 21 N -0.333 5.333 22 C -0.315 4.315 23 H 0.081 0.919 24 C -0.220 4.220 25 N -0.597 5.597 26 Si 0.730 3.270 27 H -0.224 1.224 28 H -0.224 1.224 29 H -0.212 1.212 30 C -0.061 4.061 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.175 0.825 37 H 0.270 0.730 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.210 0.790 50 H 0.057 0.943 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.412 -2.635 -8.176 20.317 hybrid contribution 1.281 -0.698 0.615 1.583 sum -17.131 -3.332 -7.561 19.020 Atomic orbital electron populations 1.21772 0.94550 1.01886 1.02266 1.20442 0.96135 0.91488 1.03508 1.20794 1.02740 0.98213 0.93750 1.22460 0.93659 0.88950 0.97558 1.67226 1.14490 1.08800 1.31597 1.19050 0.93354 0.84535 0.86368 1.84599 1.28699 1.19679 1.95441 1.21387 1.04491 0.95860 0.95623 1.17894 0.85033 0.83309 0.82611 1.91335 1.20996 1.42170 1.74313 1.47753 1.14171 1.51265 1.21221 1.21778 0.83450 0.94707 1.01933 1.21906 0.97968 0.98801 0.98499 1.21521 0.97575 0.99351 0.97144 1.22104 0.93868 0.98113 1.02638 1.21606 0.95940 0.91734 0.86077 0.91511 1.20440 0.85291 0.90588 0.96640 0.92136 1.22572 1.00415 0.99499 1.00405 1.42242 1.02281 1.13027 1.75732 1.19028 0.83714 0.96917 1.31801 0.91892 1.24542 0.97192 0.96269 1.03999 1.69643 1.30218 1.05730 1.54084 0.86298 0.86166 0.76766 0.77759 1.22389 1.22353 1.21209 1.21604 0.93180 0.92538 0.98767 0.92491 0.92509 0.92179 0.90542 0.90545 0.82467 0.72973 0.90190 0.91856 0.91668 0.91345 0.92073 0.91924 0.91564 0.90501 0.93704 0.92682 0.94365 0.79016 0.94285 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 2 C -0.08 -0.62 6.08 -27.88 -0.17 -0.78 16 3 C -0.15 -1.70 5.14 -104.54 -0.54 -2.24 16 4 C 0.13 1.57 10.84 -17.49 -0.19 1.38 16 5 N -0.50 -7.63 10.37 -12.98 -0.13 -7.77 16 6 C 0.35 5.73 7.76 -16.61 -0.13 5.61 16 7 O -0.48 -7.97 12.77 -20.70 -0.26 -8.24 16 8 C -0.17 -2.73 4.89 -104.69 -0.51 -3.25 16 9 C 0.53 9.99 6.63 -12.48 -0.08 9.91 16 10 O -0.42 -9.82 9.84 2.57 0.03 -9.79 16 11 N -0.61 -9.72 2.97 -166.18 -0.49 -10.22 16 12 C 0.10 1.26 5.56 -3.71 -0.02 1.24 16 13 C -0.13 -1.38 6.08 -26.61 -0.16 -1.55 16 14 C -0.12 -1.24 5.88 -26.69 -0.16 -1.40 16 15 C -0.13 -1.68 4.42 -26.39 -0.12 -1.79 16 16 C 0.15 2.48 2.63 -67.37 -0.18 2.30 16 17 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 18 C 0.18 3.70 1.84 -67.93 -0.13 3.57 16 19 H 0.06 1.39 6.28 -51.93 -0.33 1.06 16 20 C -0.17 -3.13 8.62 37.16 0.32 -2.81 16 21 N -0.69 -17.63 3.26 -53.42 -0.17 -17.80 16 22 C -0.18 -5.22 8.31 -15.06 -0.13 -5.35 16 23 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.03 -0.80 5.50 -17.43 -0.10 -0.89 16 25 N -0.94 -29.59 13.06 55.49 0.72 -28.87 16 26 Si 0.90 23.71 29.55 -169.99 -5.02 18.68 16 27 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 28 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 29 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 30 C -0.03 -0.47 7.23 -38.89 -0.28 -0.75 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.51 8.09 -51.93 -0.42 0.09 16 35 H 0.08 0.61 8.09 -51.93 -0.42 0.18 16 36 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 37 H 0.41 5.89 9.06 45.56 0.41 6.30 16 38 H 0.08 0.92 4.76 -51.93 -0.25 0.67 16 39 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.94 6.72 -51.93 -0.35 0.59 16 46 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.05 1.12 7.98 -51.93 -0.41 0.70 16 48 H 0.04 0.59 6.45 -51.93 -0.33 0.25 16 49 H 0.38 10.37 7.68 -40.82 -0.31 10.06 16 50 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 51 H 0.14 1.72 7.45 -52.49 -0.39 1.33 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -35.01 396.73 -8.98 -43.99 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -7.42 Total: 11.44 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -2.19 Total: 2.59 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.08 Total: -64.66 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.24 Total: -18.03 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.01 -8.98 -43.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752160160.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.027 kcal (2) G-P(sol) polarization free energy of solvation -35.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds