Wall clock time and date at job start Wed Apr 1 2020 05:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47095 * 2 1 4 4 N 1.46504 * 109.44950 * 303.93208 * 3 2 1 5 5 C 1.36933 * 119.99670 * 297.78348 * 4 3 2 6 6 H 1.08000 * 120.00418 * 356.65007 * 5 4 3 7 7 C 1.38819 * 119.99756 * 176.65155 * 5 4 3 8 8 N 1.31607 * 119.99928 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99602 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47350 * 90.00359 * 9 7 5 11 11 H 1.48501 * 109.46907 * 209.99593 * 9 7 5 12 12 H 1.48496 * 109.47383 * 329.99796 * 9 7 5 13 13 C 1.53043 * 109.46098 * 63.89828 * 3 2 1 14 14 C 1.53189 * 109.31218 * 181.38678 * 13 3 2 15 15 N 1.46924 * 108.77436 * 305.36179 * 14 13 3 16 16 C 1.34778 * 120.62883 * 233.58535 * 15 14 13 17 17 O 1.21274 * 120.00142 * 0.02562 * 16 15 14 18 18 C 1.50708 * 119.99751 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.46798 * 180.02562 * 18 16 15 20 20 N 1.31841 * 119.65467 * 269.72235 * 19 18 16 21 21 C 1.31852 * 121.77589 * 180.28004 * 20 19 18 22 22 C 1.38251 * 120.88596 * 359.97438 * 21 20 19 23 23 C 1.38528 * 119.22641 * 0.02562 * 22 21 20 24 24 C 1.38708 * 119.65653 * 90.00433 * 19 18 16 25 25 O 1.35905 * 120.47474 * 359.69401 * 24 19 18 26 26 C 1.42898 * 116.99851 * 180.02562 * 25 24 19 27 27 C 1.46927 * 118.73955 * 53.86483 * 15 14 13 28 28 C 1.53040 * 109.45927 * 183.96461 * 3 2 1 29 29 H 1.09004 * 109.46937 * 54.36906 * 1 2 3 30 30 H 1.08999 * 109.46990 * 174.36701 * 1 2 3 31 31 H 1.08998 * 109.47276 * 294.36915 * 1 2 3 32 32 H 1.08997 * 109.47238 * 239.99713 * 2 1 3 33 33 H 1.09004 * 109.47158 * 119.99909 * 2 1 3 34 34 H 0.96997 * 120.00243 * 117.78544 * 4 3 2 35 35 H 0.97008 * 120.00091 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.49759 * 61.43256 * 13 3 2 37 37 H 1.09000 * 109.49678 * 301.33732 * 13 3 2 38 38 H 1.08998 * 109.58405 * 185.57814 * 14 13 3 39 39 H 1.09000 * 109.58515 * 65.15244 * 14 13 3 40 40 H 1.09000 * 109.46701 * 59.99900 * 18 16 15 41 41 H 1.09000 * 109.46870 * 300.00294 * 18 16 15 42 42 H 1.07997 * 119.55198 * 179.97438 * 21 20 19 43 43 H 1.08009 * 120.38491 * 179.97438 * 22 21 20 44 44 H 1.08002 * 120.81674 * 179.97438 * 23 22 21 45 45 H 1.09005 * 109.47023 * 180.02562 * 26 25 24 46 46 H 1.08999 * 109.47462 * 300.00114 * 26 25 24 47 47 H 1.09005 * 109.47326 * 60.00523 * 26 25 24 48 48 H 1.08994 * 109.58856 * 65.92423 * 27 15 14 49 49 H 1.08993 * 109.58874 * 186.35260 * 27 15 14 50 50 H 1.08994 * 109.49797 * 298.56127 * 28 3 2 51 51 H 1.08998 * 109.50069 * 58.63265 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4755 2.1595 -1.1462 5 6 1.7619 1.7471 -2.4202 6 1 2.4465 0.9276 -2.5815 7 6 1.1722 2.3826 -3.5044 8 7 0.3376 3.3810 -3.3078 9 14 1.5624 1.8196 -5.2423 10 1 0.5967 0.7679 -5.6505 11 1 1.4593 2.9736 -6.1712 12 1 2.9411 1.2699 -5.2868 13 6 1.6114 2.1348 1.2958 14 6 2.0938 3.5887 1.2770 15 7 3.5431 3.6028 1.0362 16 6 4.3719 4.2584 1.8728 17 8 3.9231 4.8436 2.8356 18 6 5.8562 4.2641 1.6119 19 6 6.5518 5.0603 2.6858 20 7 6.7434 6.3539 2.5180 21 6 7.3518 7.0894 3.4276 22 6 7.8151 6.5261 4.6020 23 6 7.6346 5.1698 4.8188 24 6 6.9891 4.4235 3.8378 25 8 6.7890 3.0899 4.0064 26 6 7.2691 2.5103 5.2212 27 6 4.0712 2.8941 -0.1375 28 6 3.5671 1.4433 -0.0998 29 1 -0.3633 0.5987 -0.8353 30 1 -0.3633 -1.0227 -0.1009 31 1 -0.3634 0.4240 0.9361 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.8991 2.9262 -1.0026 35 1 -0.0742 3.8254 -4.0654 36 1 2.0512 1.6166 2.1479 37 1 0.5247 2.1132 1.3776 38 1 1.8784 4.0576 2.2371 39 1 1.5856 4.1320 0.4804 40 1 6.0523 4.7157 0.6395 41 1 6.2302 3.2403 1.6191 42 1 7.4900 8.1462 3.2527 43 1 8.3127 7.1361 5.3414 44 1 7.9867 4.7030 5.7269 45 1 7.0458 1.4434 5.2279 46 1 8.3469 2.6560 5.2922 47 1 6.7810 2.9893 6.0701 48 1 3.7211 3.3819 -1.0471 49 1 5.1608 2.9045 -0.1110 50 1 3.9885 0.9317 0.7654 51 1 3.8725 0.9291 -1.0110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755071553.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:15 Heat of formation + Delta-G solvation = -42.898993 kcal Electronic energy + Delta-G solvation = -31943.535295 eV Core-core repulsion = 27842.828275 eV Total energy + Delta-G solvation = -4100.707020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.89770 -41.06612 -39.37225 -39.02003 -36.16312 -34.48270 -34.17380 -32.57608 -32.00481 -31.64797 -30.74679 -29.14147 -28.27377 -26.35456 -25.55924 -24.44948 -23.83183 -23.35607 -22.68872 -20.70031 -19.50293 -19.01672 -18.87209 -18.23519 -18.14518 -17.31984 -16.77841 -16.60659 -16.43518 -16.17683 -15.64493 -15.38669 -15.31192 -15.30075 -14.88390 -14.81373 -14.59052 -14.35152 -14.20346 -14.09823 -13.82954 -13.42715 -13.23921 -13.03095 -12.87437 -12.82080 -12.77604 -12.55696 -12.32984 -12.30155 -12.23320 -12.12589 -12.02016 -11.74987 -11.50567 -11.40355 -10.99020 -10.87758 -10.74307 -10.55947 -10.54347 -9.55456 -9.31444 -8.80662 -7.79908 -5.04273 0.11840 0.31968 1.51567 1.52835 1.59470 1.66191 2.06765 2.27035 2.65401 2.81330 3.29842 3.54770 3.63509 3.67154 3.83820 3.88756 3.98583 4.06035 4.11038 4.21941 4.25026 4.31091 4.36327 4.39041 4.46272 4.47670 4.48714 4.61785 4.64696 4.71755 4.74052 4.79837 4.82069 4.85550 4.91900 5.05521 5.09832 5.12632 5.17847 5.22080 5.29869 5.41259 5.42431 5.52293 5.60022 5.67901 5.71464 5.79143 6.25631 6.41888 6.51959 7.03634 7.19573 7.49473 8.26557 8.49809 9.44001 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.002870 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.979229 B = 9755.401081 C =10553.129810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 C 0.195 3.805 4 N -0.717 5.717 5 C -0.199 4.199 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.971 5.971 9 Si 0.952 3.048 10 H -0.297 1.297 11 H -0.308 1.308 12 H -0.268 1.268 13 C -0.118 4.118 14 C 0.121 3.879 15 N -0.598 5.598 16 C 0.522 3.478 17 O -0.587 6.587 18 C -0.078 4.078 19 C 0.095 3.905 20 N -0.474 5.474 21 C 0.045 3.955 22 C -0.126 4.126 23 C -0.167 4.167 24 C 0.081 3.919 25 O -0.325 6.325 26 C 0.016 3.984 27 C 0.119 3.881 28 C -0.129 4.129 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.370 0.630 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.170 0.830 45 H 0.118 0.882 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.100 0.900 50 H 0.076 0.924 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.813 -1.981 19.402 26.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.105 3.895 4 N -0.357 5.357 5 C -0.332 4.332 6 H 0.095 0.905 7 C -0.268 4.268 8 N -0.624 5.624 9 Si 0.784 3.216 10 H -0.225 1.225 11 H -0.235 1.235 12 H -0.193 1.193 13 C -0.156 4.156 14 C -0.002 4.002 15 N -0.330 5.330 16 C 0.312 3.688 17 O -0.468 6.468 18 C -0.118 4.118 19 C -0.044 4.044 20 N -0.184 5.184 21 C -0.112 4.112 22 C -0.145 4.145 23 C -0.193 4.193 24 C 0.032 3.968 25 O -0.237 6.237 26 C -0.078 4.078 27 C -0.003 4.003 28 C -0.169 4.169 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.203 0.797 35 H 0.052 0.948 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.133 0.867 41 H 0.148 0.852 42 H 0.196 0.804 43 H 0.193 0.807 44 H 0.188 0.812 45 H 0.136 0.864 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.119 0.881 50 H 0.094 0.906 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 17.274 -1.564 18.872 25.631 hybrid contribution -0.318 -0.015 -0.584 0.666 sum 16.955 -1.579 18.287 24.988 Atomic orbital electron populations 1.21588 0.96460 1.00324 1.01019 1.21850 0.96033 0.97243 1.00655 1.19827 0.91836 0.91351 0.86493 1.42608 1.57745 1.34569 1.00760 1.19376 1.18506 1.11260 0.84021 0.90451 1.25282 1.01092 0.99871 1.00557 1.69798 1.35968 1.26963 1.29657 0.85428 0.77948 0.76219 0.81966 1.22547 1.23526 1.19262 1.22012 1.01349 0.94419 0.97815 1.21390 0.80132 0.97817 1.00846 1.48102 1.07012 1.51451 1.26405 1.20726 0.89173 0.77380 0.81564 1.90616 1.78737 1.46162 1.31245 1.20448 0.90062 1.02362 0.98958 1.20063 1.00033 0.90217 0.94082 1.67402 1.12578 1.05193 1.33228 1.23129 0.96256 1.01118 0.90733 1.22384 0.98752 0.94876 0.98472 1.22070 1.01564 0.95603 1.00080 1.19950 0.96737 0.84822 0.95250 1.86082 1.76810 1.18526 1.42328 1.23406 1.00225 1.00065 0.84092 1.21805 0.98965 0.92790 0.86756 1.22297 0.97123 0.95392 1.02052 0.94444 0.93290 0.92878 0.93524 0.91187 0.79747 0.94804 0.90156 0.90709 0.90637 0.93235 0.86704 0.85244 0.80382 0.80717 0.81249 0.86388 0.90683 0.92040 0.92510 0.88143 0.90564 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.39 71.98 0.68 -3.92 16 2 C -0.12 -3.82 4.78 30.59 0.15 -3.67 16 3 C 0.19 6.73 0.43 3.63 0.00 6.73 16 4 N -0.72 -31.98 3.06 -303.21 -0.93 -32.91 16 5 C -0.20 -9.93 8.72 84.04 0.73 -9.20 16 6 H 0.08 3.70 6.74 -2.91 -0.02 3.68 16 7 C -0.08 -4.18 5.50 84.87 0.47 -3.71 16 8 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 9 Si 0.95 45.12 29.55 68.60 2.03 47.15 16 10 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 11 H -0.31 -15.16 7.11 99.48 0.71 -14.46 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 C -0.12 -3.74 4.72 30.67 0.14 -3.60 16 14 C 0.12 4.30 6.16 86.36 0.53 4.83 16 15 N -0.60 -20.13 2.97 -818.08 -2.43 -22.56 16 16 C 0.52 18.04 7.69 87.66 0.67 18.71 16 17 O -0.59 -24.29 15.45 -3.01 -0.05 -24.34 16 18 C -0.08 -2.17 4.12 29.10 0.12 -2.05 16 19 C 0.10 2.73 5.29 42.67 0.23 2.95 16 20 N -0.47 -13.83 10.27 -183.50 -1.88 -15.71 16 21 C 0.04 0.96 11.18 84.69 0.95 1.91 16 22 C -0.13 -2.00 10.11 22.34 0.23 -1.78 16 23 C -0.17 -2.92 9.14 22.56 0.21 -2.71 16 24 C 0.08 1.93 6.67 22.60 0.15 2.08 16 25 O -0.33 -7.07 9.55 -92.48 -0.88 -7.96 16 26 C 0.02 0.19 9.83 113.37 1.11 1.31 16 27 C 0.12 3.75 6.11 86.51 0.53 4.28 16 28 C -0.13 -3.95 4.69 30.82 0.14 -3.81 16 29 H 0.04 1.56 7.31 -2.39 -0.02 1.54 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.61 6.79 -2.39 -0.02 1.59 16 32 H 0.05 1.63 7.60 -2.39 -0.02 1.61 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.37 18.66 6.54 -92.71 -0.61 18.05 16 35 H 0.24 14.45 8.31 -92.70 -0.77 13.68 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.07 2.39 6.60 -2.39 -0.02 2.37 16 38 H 0.08 2.75 7.00 -2.39 -0.02 2.73 16 39 H 0.05 2.01 6.98 -2.39 -0.02 2.00 16 40 H 0.11 3.01 7.93 -2.39 -0.02 2.99 16 41 H 0.13 2.98 7.09 -2.39 -0.02 2.96 16 42 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.18 1.32 8.06 -2.91 -0.02 1.29 16 44 H 0.17 1.72 6.45 -2.91 -0.02 1.70 16 45 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.07 0.56 7.70 -2.39 -0.02 0.54 16 47 H 0.06 0.64 7.70 -2.38 -0.02 0.62 16 48 H 0.06 2.21 7.72 -2.39 -0.02 2.19 16 49 H 0.10 2.50 5.93 -2.39 -0.01 2.49 16 50 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.07 2.24 7.14 -2.39 -0.02 2.22 16 Total: -1.00 -72.75 398.09 3.52 -69.23 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: 0.34 Total: 36.42 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 7.04 Total: 8.36 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -4.96 Total: -128.85 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.93 Total: -32.30 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.75 3.52 -69.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755071553.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.331 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds